RchiOBHm_Chr7g0216781

Belongs to the eukaryotic ribosomal protein eS26 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002764
Physical Location & Seq
Reverse (-)
34465914 .. 34466225
312 bp
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UTR
Exon/CDS
Intron
PRQ19398

Sequence Viewer

Length: 312 bp
ATGTGCAGGAGGCTTGTGTCTATGAGCGTTACACTGCCGAAGCTGTATTCTAAGATACAGTACTGTGTGTCCTGTGCTATTCACTCTCACGTTGTGAGGGTGAGGTCTCGCACCAACAAGAGGAACCGTGAGCCACCACAGAGATTCATCAGACGCAGGGATGATGCCCAAAGGCCTGGAGCACCATGGTCAGGGAACCCGACCTGCTGGAGCTGGTGTTCCTGCTCGTACTTGAATGAGCATATGAAGCCTGTTATGTTACTGATGTTTCCATTTAGCTACACAACTTTGCTGGACCTGAGTTTTGTGTAG

Protein Analysis

103

Amino Acids

12.14

Weight (kDa)

10.07

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S26e PF01283 6 - 54 1.4e-17 Ribosomal protein S26e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 94
AfaI GTAC 2 cut(s) 62, 230
AfiI CCNNNNNNNGG 2 cut(s) 120, 191
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 175
AloI GAACNNNNNNTCC 2 cut(s) 202, 234
AluBI AGCT 3 cut(s) 43, 213, 279
AluI AGCT 3 cut(s) 43, 213, 279
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 173
ArsI GACNNNNNNTTYG 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 212
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 125, 197
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 2 cut(s) 198, 229
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 191
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 120, 191
BseMII CTCAG 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 120, 191
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 175
Bso31I GGTCTC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 185
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 125, 197
BspMI ACCTGC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 3 cut(s) 60, 65, 128
BstDEI CTNAG 2 cut(s) 51, 299
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 176
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 162
Csp6I GTAC 2 cut(s) 61, 229
CviAII CATG 1 cut(s) 186
CviJI RGCY 7 cut(s) 13, 43, 133, 175, 213, 250, 279
CviKI_1 RGCY 7 cut(s) 13, 43, 133, 175, 213, 250, 279
CviQI GTAC 2 cut(s) 61, 229
DdeI CTNAG 2 cut(s) 51, 299
DraIII CACNNNGTG 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 185
Eco147I AGGCCT 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 1 cut(s) 189
FaiI YATR 5 cut(s) 23, 187, 243, 245, 257
FatI CATG 1 cut(s) 185
FauNDI CATATG 1 cut(s) 243
FokI GGATG 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 198, 229
HaeIII GGCC 1 cut(s) 175
HgaI GACGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 189
HinfI GANTC 1 cut(s) 144
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 60, 65, 128
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 51, 299
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 189
LmnI GCTCC 2 cut(s) 179, 210
LweI GCATC 1 cut(s) 154
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 28, 258
MhlI GDGCHC 1 cut(s) 184
MnlI CCTC 4 cut(s) 3, 90, 96, 114
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 247
NcoI CCATGG 1 cut(s) 185
NdeI CATATG 1 cut(s) 243
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 2 cut(s) 125, 197
PceI AGGCCT 1 cut(s) 175
PfeI GAWTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 125, 197
PspPI GGNCC 1 cut(s) 295
RsaI GTAC 2 cut(s) 62, 230
RsaNI GTAC 2 cut(s) 61, 229
Sau96I GGNCC 1 cut(s) 295
ScaI AGTACT 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 184
SetI ASST 7 cut(s) 45, 93, 107, 206, 215, 281, 300
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 1 cut(s) 295
SseBI AGGCCT 1 cut(s) 175
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 3 cut(s) 60, 65, 128
TaiI ACGT 1 cut(s) 93
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 1 cut(s) 144
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 136, 260
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 295
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.