Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

30629480 .. 30631364

Gene Structure 1885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1232300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACTTTCAAGCGCAGAAATGGAGGTCGCAACAAGCACGGCCGTGGACACGTCAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCTAAGGACAAGGCCATCAAGAGATTCTTGGTGAGGAACATCGTCGAGCAGGCTGCGGTGAGAGATGTTCAGGAAGCCTGTGTCTATGAGCAATACACTCTGCCTAAGCTGTATGCCAAGATGCAGTACTGTGTTTCCTGTGCAATTCACTCTCACGTTGTGAGGGTGCGATCGCGCACCAACAGGAGGAACCGCGAGCCGCCACAGCGATTCATCAGACGCAGGGATGATGCCCCAAGGCCCGGCCAGCCTGGTCAAGCTCCCCGACCCGCTGGAGCTGGGGTTCCTGCTCGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

11.05

Isoelectric Point (pI)

68.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 106	4e-54	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	265, 285
AciI	CCGC	6 cut(s)	64, 78, 146, 283, 290, 360
AcoI	YGGCCR	2 cut(s)	40, 334
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	218, 385
AfiI	CCNNNNNNNGG	2 cut(s)	276, 332
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	340
AleI	CACNNNNGTG	1 cut(s)	42
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	3 cut(s)	199, 350, 368
AluI	AGCT	3 cut(s)	199, 350, 368
AoxI	GGCC	4 cut(s)	40, 102, 329, 334
ApeKI	GCWGC	3 cut(s)	66, 87, 143
AsiSI	GCGATCGC	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	15, 267
AspS9I	GGNCC	1 cut(s)	330
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	133, 160
AxyI	CCTNAGG	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	53, 74, 130
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	2 cut(s)	27, 55
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	333
BisI	GCNGC	5 cut(s)	67, 79, 88, 144, 290
BlsI	GCNGC	5 cut(s)	68, 80, 89, 145, 291
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	333, 342
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	2 cut(s)	281, 375
BmrFI	CCNGG	2 cut(s)	333, 342
BmsI	GCATC	2 cut(s)	201, 310
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	43, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 332
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	43, 326
BseGI	GGATG	2 cut(s)	60, 322
BseLI	CCNNNNNNNGG	2 cut(s)	276, 332
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	53, 74, 130
BseYI	CCCAGC	1 cut(s)	368
Bsh1236I	CGCG	2 cut(s)	265, 285
Bsh1285I	CGRYCG	2 cut(s)	43, 263
BshFI	GGCC	4 cut(s)	42, 104, 331, 336
BsiEI	CGRYCG	2 cut(s)	43, 263
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	276, 332
BsnI	GGCC	4 cut(s)	42, 104, 331, 336
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	6 cut(s)	64, 78, 146, 283, 290, 360
BspANI	GGCC	4 cut(s)	42, 104, 331, 336
BspFNI	CGCG	2 cut(s)	265, 285
BspLI	GGNNCC	2 cut(s)	281, 375
BssECI	CCNNGG	2 cut(s)	43, 326
BssMI	GATC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	141, 287, 338
BstDEI	CTNAG	2 cut(s)	93, 195
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	60, 322
BstFNI	CGCG	2 cut(s)	265, 285
BstHHI	GCGC	2 cut(s)	15, 267
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstMCI	CGRYCG	2 cut(s)	43, 263
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 84, 87, 295, 337
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	331, 340
BstUI	CGCG	2 cut(s)	265, 285
BstV1I	GCAGC	3 cut(s)	53, 74, 130
BstZI	CGGCCG	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	42, 104, 331, 336
BtgI	CCRYGG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	60, 322
Cac8I	GCNNGC	3 cut(s)	141, 287, 338
CfoI	GCGC	2 cut(s)	15, 267
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	217, 384
CviQI	GTAC	2 cut(s)	217, 384
DdeI	CTNAG	2 cut(s)	93, 195
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	40, 334
EagI	CGGCCG	1 cut(s)	40
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	326
Eco52I	CGGCCG	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaiI	YATR	2 cut(s)	177, 204
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FauI	CCCGC	1 cut(s)	367
Fnu4HI	GCNGC	5 cut(s)	67, 79, 88, 144, 290
FokI	GGATG	2 cut(s)	47, 329
Fsp4HI	GCNGC	5 cut(s)	67, 79, 88, 144, 290
GlaI	GCGC	2 cut(s)	14, 266
GluI	GCNGC	5 cut(s)	67, 79, 88, 144, 290
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	4 cut(s)	42, 104, 331, 336
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	2 cut(s)	15, 267
Hin6I	GCGC	2 cut(s)	13, 265
HinP1I	GCGC	2 cut(s)	13, 265
HinfI	GANTC	2 cut(s)	114, 300
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	133, 160
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	2 cut(s)	109, 161
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	2 cut(s)	51, 246
HpyCH4V	TGCA	2 cut(s)	214, 233
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 84, 87, 295, 337
HpyF3I	CTNAG	2 cut(s)	93, 195
HpySE526I	ACGT	2 cut(s)	51, 246
HspAI	GCGC	2 cut(s)	13, 265
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	74, 355, 365
Lsp1109I	GCAGC	3 cut(s)	53, 74, 130
LweI	GCATC	2 cut(s)	201, 310
MaeII	ACGT	2 cut(s)	51, 246
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MluCI	AATT	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	17, 117, 246, 270
MslI	CAYNNNNRTG	1 cut(s)	42
MspA1I	CMGCKG	2 cut(s)	66, 362
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	333, 342
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	2 cut(s)	265, 285
MwoI	GCNNNNNNNGC	5 cut(s)	75, 84, 87, 295, 337
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	281, 375
OliI	CACNNNNGTG	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	114, 300
PkrI	GCNGC	5 cut(s)	68, 80, 89, 145, 291
Ple19I	CGATCG	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	281, 375
PspPI	GGNCC	1 cut(s)	330
PvuI	CGATCG	1 cut(s)	263
RgaI	GCGATCGC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	218, 385
RsaNI	GTAC	2 cut(s)	217, 384
RseI	CAYNNNNRTG	1 cut(s)	42
SatI	GCNGC	5 cut(s)	67, 79, 88, 144, 290
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	1 cut(s)	330
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	333, 342
SetI	ASST	6 cut(s)	28, 54, 201, 249, 352, 370
SfaAI	GCGATCGC	1 cut(s)	263
SfaNI	GCATC	2 cut(s)	201, 310
SgfI	GCGATCGC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	6 cut(s)	64, 78, 146, 283, 290, 360
StyD4I	CCNGG	2 cut(s)	331, 340
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	2 cut(s)	54, 249
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	234
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	2 cut(s)	81, 292
TfiI	GAWTC	2 cut(s)	114, 300
TseI	GCWGC	3 cut(s)	66, 87, 143
TspDTI	ATGAA	2 cut(s)	49, 292
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.