Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

17061570 .. 17063227

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17890.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATAACAGGCGCCAGGCCGCTGTCCCATATAAAACGGAAGCCTTCCCGAATTCTTTCACTTTCTGGCTTCTGCAGCAACGAGAAAAACCCTAAACGGCCCCAGAACTCTCAGATCTCCTCCTCTCGGAACGCCATGACTTTCAAGCGCAGAAATGGAGGTCGCAACAAGCACGGCCGTGGACACGTCAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCCATCAAGAGATTCTTGGTGAGGAACATCGTCGAGCAAGCTGCTGTGAGAGATGTTCAGGAAGCCTGTATCTATGAGCAATACACGTTGCCTAAGCTGTATGCCAAGATGCAGTACTGTGTTTCCTGTGCAATTCACTCCCATGTTGTGAGGGTGCGATCCCGCACCAACAGGAGGAACCGTGAGCCACCACAGCGATTCATCAGACGCAGGGATGATGCCCCAAGGCCCGGTCAGCCTGGTCAAGCTCCCCGACCTGCTGGAGCTGGTGTTCCTGCTCGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

175

Amino Acids

19.79

Weight (kDa)

11.35

Isoelectric Point (pI)

70.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	502
AccB1I	GGYRCC	1 cut(s)	11
AciI	CCGC	4 cut(s)	20, 199, 213, 400
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	2 cut(s)	353, 520
AfiI	CCNNNNNNNGG	3 cut(s)	126, 411, 467
AflIII	ACRYGT	2 cut(s)	184, 321
AgsI	TTSAA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	14, 475
AleI	CACNNNNGTG	1 cut(s)	177
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	4 cut(s)	278, 334, 485, 503
AluI	AGCT	4 cut(s)	278, 334, 485, 503
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	5 cut(s)	17, 98, 175, 237, 464
ApeKI	GCWGC	4 cut(s)	75, 201, 222, 278
ApoI	RAATTY	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	14, 150
AspS9I	GGNCC	2 cut(s)	99, 465
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	87, 188, 209, 265
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	3 cut(s)	113, 162, 190
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	2 cut(s)	16, 477
BcnI	CCSGG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	73
BfoI	RGCGCY	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	502
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	6 cut(s)	20, 76, 202, 214, 223, 279
BlsI	GCNGC	6 cut(s)	21, 77, 203, 215, 224, 280
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	3 cut(s)	16, 468, 477
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	99, 465
BmiI	GGNNCC	3 cut(s)	13, 101, 416
BmrFI	CCNGG	3 cut(s)	16, 468, 477
BmsI	GCATC	2 cut(s)	336, 445
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	178, 228, 461
BsaXI	ACNNNNNCTCC	4 cut(s)	403, 433, 492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 411, 467
BseBI	CCWGG	2 cut(s)	16, 477
BseDI	CCNNGG	3 cut(s)	178, 228, 461
BseGI	GGATG	2 cut(s)	195, 457
BseLI	CCNNNNNNNGG	3 cut(s)	126, 411, 467
BseMII	CTCAG	1 cut(s)	125
BseRI	GAGGAG	2 cut(s)	109, 112
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	4 cut(s)	87, 188, 209, 265
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	5 cut(s)	19, 100, 177, 239, 466
BshNI	GGYRCC	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	126, 411, 467
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	5 cut(s)	19, 100, 177, 239, 466
Bsp143I	GATC	2 cut(s)	114, 395
BspACI	CCGC	4 cut(s)	20, 199, 213, 400
BspANI	GGCC	5 cut(s)	19, 100, 177, 239, 466
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	13, 101, 416
BspMAI	CTGCAG	1 cut(s)	77
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	178, 228, 461
BssMI	GATC	2 cut(s)	114, 395
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	228, 461
Bst2UI	CCWGG	2 cut(s)	16, 477
Bst4CI	ACNGT	2 cut(s)	356, 419
BstACI	GRCGYC	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	111, 330
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	195, 457
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 150
BstKTI	GATC	2 cut(s)	117, 398
BstMBI	GATC	2 cut(s)	114, 395
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 210, 219, 222, 430, 472
BstNI	CCWGG	2 cut(s)	16, 477
BstSCI	CCNGG	3 cut(s)	14, 466, 475
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	4 cut(s)	87, 188, 209, 265
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	5 cut(s)	19, 100, 177, 239, 466
BtgI	CCRYGG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	195, 457
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	2 cut(s)	14, 150
Cfr13I	GGNCC	2 cut(s)	99, 465
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	352, 519
CviAII	CATG	2 cut(s)	136, 380
CviQI	GTAC	2 cut(s)	352, 519
DdeI	CTNAG	2 cut(s)	111, 330
DinI	GGCGCC	1 cut(s)	13
DpnI	GATC	2 cut(s)	116, 397
DpnII	GATC	2 cut(s)	114, 395
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	228, 461
Eco52I	CGGCCG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	14, 475
EcoT14I	CCWWGG	2 cut(s)	228, 461
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	228, 461
FaeI	CATG	2 cut(s)	139, 383
FaiI	YATR	6 cut(s)	30, 32, 137, 312, 339, 381
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	2 cut(s)	135, 379
FauI	CCCGC	1 cut(s)	407
Fnu4HI	GCNGC	6 cut(s)	20, 76, 202, 214, 223, 279
FokI	GGATG	2 cut(s)	182, 464
Fsp4HI	GCNGC	6 cut(s)	20, 76, 202, 214, 223, 279
GlaI	GCGC	2 cut(s)	13, 149
GluI	GCNGC	6 cut(s)	20, 76, 202, 214, 223, 279
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	5 cut(s)	19, 100, 177, 239, 466
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	2 cut(s)	14, 150
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	139, 383
Hin6I	GCGC	2 cut(s)	12, 148
HinP1I	GCGC	2 cut(s)	12, 148
HinfI	GANTC	2 cut(s)	249, 435
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	3 cut(s)	114, 129, 443
Hpy188III	TCNNGA	3 cut(s)	48, 244, 296
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	2 cut(s)	356, 419
HpyCH4IV	ACGT	2 cut(s)	186, 323
HpyCH4V	TGCA	3 cut(s)	75, 349, 368
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 210, 219, 222, 430, 472
HpyF3I	CTNAG	2 cut(s)	111, 330
HpySE526I	ACGT	2 cut(s)	186, 323
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	139, 383
HspAI	GCGC	2 cut(s)	12, 148
KasI	GGCGCC	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	114, 395
LmnI	GCTCC	3 cut(s)	209, 490, 500
Lsp1109I	GCAGC	4 cut(s)	87, 188, 209, 265
LweI	GCATC	2 cut(s)	336, 445
MaeII	ACGT	2 cut(s)	186, 323
MalI	GATC	2 cut(s)	116, 397
MboI	GATC	2 cut(s)	114, 395
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	2 cut(s)	51, 369
Mly113I	GGCGCC	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	130, 133, 152, 252, 381, 405
MroXI	GAANNNNTTC	1 cut(s)	55
MslI	CAYNNNNRTG	2 cut(s)	177, 378
MspA1I	CMGCKG	2 cut(s)	22, 201
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	3 cut(s)	16, 468, 477
MvaI	CCWGG	2 cut(s)	16, 477
MwoI	GCNNNNNNNGC	6 cut(s)	75, 210, 219, 222, 430, 472
NarI	GGCGCC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	114, 395
NlaIII	CATG	2 cut(s)	139, 383
NlaIV	GGNNCC	3 cut(s)	13, 101, 416
OliI	CACNNNNGTG	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	249, 435
PkrI	GCNGC	6 cut(s)	21, 77, 203, 215, 224, 280
PluTI	GGCGCC	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	14, 475
PspGI	CCWGG	2 cut(s)	14, 475
PspN4I	GGNNCC	3 cut(s)	13, 101, 416
PspPI	GGNCC	2 cut(s)	99, 465
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	2 cut(s)	353, 520
RsaNI	GTAC	2 cut(s)	352, 519
RseI	CAYNNNNRTG	2 cut(s)	177, 378
SatI	GCNGC	6 cut(s)	20, 76, 202, 214, 223, 279
Sau3AI	GATC	2 cut(s)	114, 395
Sau96I	GGNCC	2 cut(s)	99, 465
ScaI	AGTACT	1 cut(s)	353
ScrFI	CCNGG	3 cut(s)	16, 468, 477
SetI	ASST	8 cut(s)	163, 189, 280, 326, 336, 487, 496, 505
SfaNI	GCATC	2 cut(s)	336, 445
SfcI	CTRYAG	1 cut(s)	73
SfoI	GGCGCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	177, 378
Sse9I	AATT	2 cut(s)	51, 369
SsiI	CCGC	4 cut(s)	20, 199, 213, 400
SspDI	GGCGCC	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	14, 466, 475
StyI	CCWWGG	2 cut(s)	228, 461
TaaI	ACNGT	2 cut(s)	356, 419
TaiI	ACGT	2 cut(s)	189, 326
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	51, 369
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	2 cut(s)	22, 216
TfiI	GAWTC	2 cut(s)	249, 435
TseI	GCWGC	4 cut(s)	75, 201, 222, 278
TspDTI	ATGAA	2 cut(s)	184, 427
TspGWI	ACGGA	1 cut(s)	52
XapI	RAATTY	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.