Rorug01G0367600

Belongs to the eukaryotic ribosomal protein eS26 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002764
Physical Location & Seq
Reverse (-)
48303769 .. 48305386
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0367600.1

Sequence Viewer

Length: 876 bp
ATGAAGATTGTCCCAAAGTTGAAGTGGGCGGTGCAGGTGCAGCCTTCCGTTCAGGATCATTTAGCCTCTATCTTGGAGGTTAAGAAAGTGGAAGAGCATGACAGATATTTGGGGTTGCCTCTGAGGGTGGGAAAATCAAAAACAGCAAACTTTGCCTACATCAAGGAGAAGCTTACAAAAAAGCTCATTGGTTGGAAATCAAAGCTTCTCAGTTTTGCAAGTAAGGAAGTTCTTATCAAAGTTGTTGCTCAGACAATGCCATATTATGCCATGAATTGTTATCTGCTTCCAAAGACTTTGTGTGATGACATTCATCAGTTGTGTGCCCAATTTTTTAGGGTAATGGGTAATGTTCTCACATCTACTTCTTCTGGTGACCCCTATAAATGTCTATGGAGGAAAATATGGAATGCTAGGGTGCCTGGGACAGTACAGATTTGTGTATGGCGAGCTGTGAATAACATTTTGCCTACAAGAGAGCAATTAATTCATAAAGGCTACACAGGACCTGCCAACTGCTTATTATGCGCGAGTCTTGAGACAAATTCCCATGTGTTTTGTCATTGCCTTACTGCCAAAGAAACCTATGCAGCATCAGCTATCAATTTGCAAAATAATACAGTGTTCTCTTTCAAGGATTGGATGCTTGATCAAATGGAGCAATTAAGCAAAGAAAGTTTGGAAAGGTTACTGATGCTTATTTGGTCACTATGGAAGAATAGGAACAACAAGCTATGGACAGACACTTCTCAGAGTGCTCATGCCAGTATGGCTAGTTCTCTTACCTGGCATAGTGAGTTTTTAAAAGCTCAACAATCACAGGTTCAAAACTGCAGTAACCAAACTGTAGAAACACTACACAGATTGACACAGTAA

Protein Analysis

291

Amino Acids

33.35

Weight (kDa)

9.35

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 128 - 194 2.3e-13 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc36I ACCTGC 2 cut(s) 25, 517
AccB1I GGYRCC 1 cut(s) 418
AccII CGCG 1 cut(s) 530
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 544
AfaI GTAC 1 cut(s) 432
AgsI TTSAA 3 cut(s) 22, 634, 827
AjnI CCWGG 2 cut(s) 421, 785
AluBI AGCT 7 cut(s) 172, 184, 205, 452, 599, 733, 809
AluI AGCT 7 cut(s) 172, 184, 205, 452, 599, 733, 809
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 509
ApeKI GCWGC 2 cut(s) 40, 590
ApoI RAATTY 1 cut(s) 544
AseI ATTAAT 1 cut(s) 485
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 2 cut(s) 52, 602
BciT130I CCWGG 2 cut(s) 423, 787
BclI TGATCA 1 cut(s) 649
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 2 cut(s) 414, 774
BfmI CTRYAG 2 cut(s) 832, 846
BfuAI ACCTGC 2 cut(s) 25, 517
BglI GCCNNNNNGGC 1 cut(s) 770
BisI GCNGC 2 cut(s) 41, 591
BlsI GCNGC 2 cut(s) 42, 592
Bme1390I CCNGG 2 cut(s) 423, 787
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 2 cut(s) 423, 787
BmsI GCATC 3 cut(s) 602, 633, 684
BpuEI CTTGAG 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 423, 787
BseDI CCNNGG 1 cut(s) 422
BseGI GGATG 1 cut(s) 648
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 4 cut(s) 113, 223, 263, 764
BseNI ACTGG 1 cut(s) 765
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 2 cut(s) 52, 602
BsgI GTGCAG 2 cut(s) 53, 59
Bsh1236I CGCG 1 cut(s) 530
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 760
BslFI GGGAC 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 1 cut(s) 415
Bsp1286I GDGCHC 2 cut(s) 328, 760
Bsp143I GATC 2 cut(s) 55, 649
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 4 cut(s) 114, 222, 262, 763
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 1 cut(s) 420
BspMAI CTGCAG 1 cut(s) 836
BspMI ACCTGC 2 cut(s) 25, 517
BspPI GGATC 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 1 cut(s) 765
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 2 cut(s) 55, 649
Bst2UI CCWGG 2 cut(s) 423, 787
Bst4CI ACNGT 4 cut(s) 430, 622, 847, 873
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 4 cut(s) 122, 209, 249, 750
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 648
BstFNI CGCG 1 cut(s) 530
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 2 cut(s) 58, 652
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 2 cut(s) 55, 649
BstMWI GCNNNNNNNGC 5 cut(s) 40, 152, 525, 596, 770
BstNI CCWGG 2 cut(s) 423, 787
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 421, 785
BstSFI CTRYAG 2 cut(s) 832, 846
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 2 cut(s) 52, 602
BtsCI GGATG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 627
BveI ACCTGC 2 cut(s) 25, 517
Cac8I GCNNGC 1 cut(s) 450
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 506
Csp6I GTAC 1 cut(s) 431
CviAII CATG 4 cut(s) 98, 271, 551, 761
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 4 cut(s) 122, 209, 249, 750
DpnI GATC 2 cut(s) 57, 651
DpnII GATC 2 cut(s) 55, 649
DraI TTTAAA 1 cut(s) 804
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 506
Eco91I GGTNACC 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 506
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 421, 785
FaeI CATG 4 cut(s) 101, 274, 554, 764
FaqI GGGAC 1 cut(s) 439
FatI CATG 4 cut(s) 97, 270, 550, 760
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 2 cut(s) 41, 591
FokI GGATG 1 cut(s) 655
Fsp4HI GCNGC 2 cut(s) 41, 591
FspBI CTAG 2 cut(s) 414, 774
GlaI GCGC 1 cut(s) 529
GluI GCNGC 2 cut(s) 41, 591
HhaI GCGC 1 cut(s) 530
Hin1II CATG 4 cut(s) 101, 274, 554, 764
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HindIII AAGCTT 2 cut(s) 170, 203
HinfI GANTC 1 cut(s) 532
HphI GGTGA 1 cut(s) 386
Hpy188I TCNGA 3 cut(s) 123, 252, 753
Hpy188III TCNNGA 2 cut(s) 53, 536
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 4 cut(s) 430, 622, 847, 873
HpyCH4V TGCA 6 cut(s) 34, 40, 218, 590, 610, 834
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 152, 525, 596, 770
HpyF3I CTNAG 4 cut(s) 122, 209, 249, 750
Hsp92II CATG 4 cut(s) 101, 274, 554, 764
HspAI GCGC 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 2 cut(s) 55, 649
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 2 cut(s) 52, 602
LweI GCATC 3 cut(s) 602, 633, 684
MaeI CTAG 2 cut(s) 414, 774
MaeIII GTNAC 4 cut(s) 374, 687, 705, 836
MalI GATC 2 cut(s) 57, 651
MboI GATC 2 cut(s) 55, 649
MboII GAAGA 4 cut(s) 16, 104, 360, 727
MhlI GDGCHC 2 cut(s) 328, 760
MluCI AATT 7 cut(s) 274, 329, 482, 486, 544, 604, 662
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 5 cut(s) 70, 76, 117, 129, 390
MseI TTAA 4 cut(s) 81, 485, 665, 803
MspR9I CCNGG 2 cut(s) 423, 787
Mva1269I GAATGC 1 cut(s) 415
MvaI CCWGG 2 cut(s) 423, 787
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 5 cut(s) 40, 152, 525, 596, 770
NdeII GATC 2 cut(s) 55, 649
NlaIII CATG 4 cut(s) 101, 274, 554, 764
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 374, 705
PaqCI CACCTGC 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 87
PctI GAATGC 1 cut(s) 415
PkrI GCNGC 2 cut(s) 42, 592
PleI GAGTC 1 cut(s) 540
PpsI GAGTC 1 cut(s) 540
PpuMI RGGWCCY 1 cut(s) 506
PshBI ATTAAT 1 cut(s) 485
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 421, 785
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 2 cut(s) 421, 785
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 1 cut(s) 506
PspPPI RGGWCCY 1 cut(s) 506
PsrI GAACNNNNNNTAC 2 cut(s) 760, 792
PstI CTGCAG 1 cut(s) 836
PstNI CAGNNNCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 4 cut(s) 81, 485, 665, 803
SatI GCNGC 2 cut(s) 41, 591
Sau3AI GATC 2 cut(s) 55, 649
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 2 cut(s) 423, 787
SduI GDGCHC 2 cut(s) 328, 760
SfaNI GCATC 3 cut(s) 602, 633, 684
SfcI CTRYAG 2 cut(s) 832, 846
SinI GGWCC 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 7 cut(s) 274, 329, 482, 486, 544, 604, 662
SsiI CCGC 1 cut(s) 29
SspMI CTAG 2 cut(s) 414, 774
StyD4I CCNGG 2 cut(s) 421, 785
TaaI ACNGT 4 cut(s) 430, 622, 847, 873
TasI AATT 7 cut(s) 274, 329, 482, 486, 544, 604, 662
TatI WGTACW 1 cut(s) 430
Tru1I TTAA 4 cut(s) 81, 485, 665, 803
Tru9I TTAA 4 cut(s) 81, 485, 665, 803
TscAI CASTG 1 cut(s) 627
TseFI GTSAC 2 cut(s) 374, 705
TseI GCWGC 2 cut(s) 40, 590
Tsp45I GTSAC 2 cut(s) 374, 705
TspDTI ATGAA 4 cut(s) 17, 287, 302, 479
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 506
VspI ATTAAT 1 cut(s) 485
XapI RAATTY 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XspI CTAG 2 cut(s) 414, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.