MD11G1054800.v1.1

Belongs to the eukaryotic ribosomal protein eS26 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002764
Physical Location & Seq
Forward (+)
4665523 .. 4667674
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1054800.v1.1.491

Sequence Viewer

Length: 399 bp
ATGACTTTCAAGAGAAGAAATGGCGGCCGGAACAAGCACGGCCGCGGCCACGTGAAGTTCATCCGCTGCTCCAACTGCGGGAAATGCTGCCCCAAGGACAAAGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAGCAGGCTGCAGTTAGGGATGTTCAGGAGGCTTGTGTTTACGATGGTTACACTCTTCCTAAGCTGTATGCTAAGATGCAATACTGCGTTTCTTGTGCCATCCACTCCCACGTTGTGAGGGTTCGGTCTCGCGAGAACAGGAGGAACCGTGAACCCCCTCAGCGTTACAGGCGCCGGGAGGATACACCTAGGCCTGGTGCACCTGGTGCTCCTGGTCAGGGTCCACGCCCTGTTGGTGCTGGAGCGCCAGCTGCTCGTCCATGA

Protein Analysis

133

Amino Acids

14.91

Weight (kDa)

10.77

Isoelectric Point (pI)

64.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S26e PF01283 1 - 106 1.3e-54 Ribosomal protein S26e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 306
AccII CGCG 2 cut(s) 45, 267
AciI CCGC 5 cut(s) 24, 43, 45, 64, 78
AcoI YGGCCR 3 cut(s) 25, 40, 46
AcvI CACGTG 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 307
AdeI CACNNNGTG 2 cut(s) 250, 341
AfiI CCNNNNNNNGG 3 cut(s) 78, 329, 353
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 3 cut(s) 328, 337, 346
AluBI AGCT 3 cut(s) 104, 199, 386
AluI AGCT 3 cut(s) 104, 199, 386
Alw21I GWGCWC 2 cut(s) 337, 346
Alw26I GTCTC 1 cut(s) 267
Alw44I GTGCAC 1 cut(s) 333
AoxI GGCC 4 cut(s) 25, 40, 46, 326
ApaLI GTGCAC 1 cut(s) 333
ApeKI GCWGC 4 cut(s) 66, 87, 143, 386
AspA2I CCTAGG 1 cut(s) 323
AspLEI GCGC 2 cut(s) 309, 382
AspS9I GGNCC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 356
AvrII CCTAGG 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 337
BanI GGYRCC 1 cut(s) 306
BbrPI CACGTG 1 cut(s) 52
Bbv12I GWGCWC 2 cut(s) 337, 346
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 4 cut(s) 53, 74, 130, 373
BccI CCATC 2 cut(s) 173, 242
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 3 cut(s) 330, 339, 348
BciVI GTATCC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 144
BfoI RGCGCY 2 cut(s) 310, 383
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 7 cut(s) 25, 43, 46, 67, 88, 144, 387
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 7 cut(s) 26, 44, 47, 68, 89, 145, 388
Bme1390I CCNGG 4 cut(s) 311, 330, 339, 348
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 3 cut(s) 281, 308, 357
BmrFI CCNGG 4 cut(s) 311, 330, 339, 348
BmsI GCATC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 2 cut(s) 195, 294
BpuMI CCSGG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 307
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 43, 93, 323
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 329, 353
BseBI CCWGG 3 cut(s) 330, 339, 348
BseDI CCNNGG 3 cut(s) 43, 93, 323
BseGI GGATG 3 cut(s) 60, 160, 234
BseLI CCNNNNNNNGG 3 cut(s) 78, 329, 353
BseMII CTCAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 337
BseX3I CGGCCG 2 cut(s) 25, 40
BseXI GCAGC 4 cut(s) 53, 74, 130, 373
Bsh1236I CGCG 2 cut(s) 45, 267
Bsh1285I CGRYCG 2 cut(s) 28, 43
BshFI GGCC 4 cut(s) 27, 42, 48, 328
BshNI GGYRCC 1 cut(s) 306
BsiEI CGRYCG 2 cut(s) 28, 43
BsiHKAI GWGCWC 2 cut(s) 337, 346
BsiSI CCGG 2 cut(s) 28, 310
BslI CCNNNNNNNGG 3 cut(s) 78, 329, 353
BsmAI GTCTC 1 cut(s) 267
BsnI GGCC 4 cut(s) 27, 42, 48, 328
Bso31I GGTCTC 1 cut(s) 267
Bsp1286I GDGCHC 2 cut(s) 337, 346
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 5 cut(s) 24, 43, 45, 64, 78
BspANI GGCC 4 cut(s) 27, 42, 48, 328
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 2 cut(s) 45, 267
BspLI GGNNCC 3 cut(s) 281, 308, 357
BspMAI CTGCAG 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 267
BssECI CCNNGG 3 cut(s) 43, 93, 323
BssNI GRCGYC 1 cut(s) 307
BssT1I CCWWGG 2 cut(s) 93, 323
Bst2UI CCWGG 3 cut(s) 330, 339, 348
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 141, 384
BstDEI CTNAG 3 cut(s) 195, 207, 294
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 3 cut(s) 60, 160, 234
BstFNI CGCG 2 cut(s) 45, 267
BstH2I RGCGCY 2 cut(s) 310, 383
BstHHI GCGC 2 cut(s) 309, 382
BstMAI GTCTC 1 cut(s) 267
BstMCI CGRYCG 2 cut(s) 28, 43
BstMWI GCNNNNNNNGC 5 cut(s) 75, 84, 304, 341, 386
BstNI CCWGG 3 cut(s) 330, 339, 348
BstSCI CCNGG 4 cut(s) 309, 328, 337, 346
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 337
BstUI CGCG 2 cut(s) 45, 267
BstV1I GCAGC 4 cut(s) 53, 74, 130, 373
BstZI CGGCCG 2 cut(s) 25, 40
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 4 cut(s) 27, 42, 48, 328
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 3 cut(s) 60, 160, 234
BtuMI TCGCGA 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 141, 384
CfoI GCGC 2 cut(s) 309, 382
Cfr13I GGNCC 1 cut(s) 356
Cfr42I CCGCGG 1 cut(s) 46
CsiI ACCWGGT 1 cut(s) 337
CviAII CATG 1 cut(s) 396
CviJI RGCY 9 cut(s) 27, 42, 48, 104, 143, 167, 199, 328, 386
CviKI_1 RGCY 9 cut(s) 27, 42, 48, 104, 143, 167, 199, 328, 386
DdeI CTNAG 3 cut(s) 195, 207, 294
DinI GGCGCC 1 cut(s) 308
DraIII CACNNNGTG 2 cut(s) 250, 341
EaeI YGGCCR 3 cut(s) 25, 40, 46
EagI CGGCCG 2 cut(s) 25, 40
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EclXI CGGCCG 2 cut(s) 25, 40
Eco130I CCWWGG 2 cut(s) 93, 323
Eco147I AGGCCT 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 356
Eco52I CGGCCG 2 cut(s) 25, 40
Eco72I CACGTG 1 cut(s) 52
EcoRII CCWGG 3 cut(s) 328, 337, 346
EcoT14I CCWWGG 2 cut(s) 93, 323
EgeI GGCGCC 1 cut(s) 308
EheI GGCGCC 1 cut(s) 308
ErhI CCWWGG 2 cut(s) 93, 323
FaeI CATG 1 cut(s) 399
FaiI YATR 2 cut(s) 204, 397
FatI CATG 1 cut(s) 395
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 7 cut(s) 25, 43, 46, 67, 88, 144, 387
FokI GGATG 3 cut(s) 47, 167, 221
Fsp4HI GCNGC 7 cut(s) 25, 43, 46, 67, 88, 144, 387
FspBI CTAG 1 cut(s) 324
GlaI GCGC 2 cut(s) 308, 381
GluI GCNGC 7 cut(s) 25, 43, 46, 67, 88, 144, 387
GsuI CTGGAG 1 cut(s) 396
HaeII RGCGCY 2 cut(s) 310, 383
HaeIII GGCC 4 cut(s) 27, 42, 48, 328
HapII CCGG 2 cut(s) 28, 310
HhaI GCGC 2 cut(s) 309, 382
Hin1I GRCGYC 1 cut(s) 307
Hin1II CATG 1 cut(s) 399
Hin6I GCGC 2 cut(s) 307, 380
HinP1I GCGC 2 cut(s) 307, 380
HpaII CCGG 2 cut(s) 28, 310
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 4 cut(s) 175, 287, 335, 359
Hpy188III TCNNGA 4 cut(s) 10, 109, 161, 266
Hpy8I GTNNAC 4 cut(s) 175, 287, 335, 359
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 2 cut(s) 51, 246
HpyCH4V TGCA 3 cut(s) 146, 214, 335
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 84, 304, 341, 386
HpyF3I CTNAG 3 cut(s) 195, 207, 294
HpySE526I ACGT 2 cut(s) 51, 246
Hsp92I GRCGYC 1 cut(s) 307
Hsp92II CATG 1 cut(s) 399
HspAI GCGC 2 cut(s) 307, 380
KasI GGCGCC 1 cut(s) 306
KspI CCGCGG 1 cut(s) 46
LmnI GCTCC 3 cut(s) 74, 349, 377
Lsp1109I GCAGC 4 cut(s) 53, 74, 130, 373
LweI GCATC 1 cut(s) 201
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 51, 246
MaeIII GTNAC 2 cut(s) 182, 299
MboII GAAGA 2 cut(s) 27, 182
MhlI GDGCHC 2 cut(s) 337, 346
Mly113I GGCGCC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 7 cut(s) 105, 117, 157, 246, 270, 303, 307
MspA1I CMGCKG 3 cut(s) 45, 66, 386
MspI CCGG 2 cut(s) 28, 310
MspR9I CCNGG 4 cut(s) 311, 330, 339, 348
MvaI CCWGG 3 cut(s) 330, 339, 348
MvnI CGCG 2 cut(s) 45, 267
MwoI GCNNNNNNNGC 5 cut(s) 75, 84, 304, 341, 386
NarI GGCGCC 1 cut(s) 307
NciI CCSGG 1 cut(s) 311
NlaIII CATG 1 cut(s) 399
NlaIV GGNNCC 3 cut(s) 281, 308, 357
NruI TCGCGA 1 cut(s) 267
PceI AGGCCT 1 cut(s) 328
PkrI GCNGC 7 cut(s) 26, 44, 47, 68, 89, 145, 388
PluTI GGCGCC 1 cut(s) 310
PmaCI CACGTG 1 cut(s) 52
PmlI CACGTG 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 52
Psp6I CCWGG 3 cut(s) 328, 337, 346
PspCI CACGTG 1 cut(s) 52
PspGI CCWGG 3 cut(s) 328, 337, 346
PspN4I GGNNCC 3 cut(s) 281, 308, 357
PspPI GGNCC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 386
RruI TCGCGA 1 cut(s) 267
SacII CCGCGG 1 cut(s) 46
SatI GCNGC 7 cut(s) 25, 43, 46, 67, 88, 144, 387
Sau96I GGNCC 1 cut(s) 356
ScrFI CCNGG 4 cut(s) 311, 330, 339, 348
SduI GDGCHC 2 cut(s) 337, 346
SetI ASST 8 cut(s) 54, 106, 116, 201, 249, 325, 340, 388
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 144
SfoI GGCGCC 1 cut(s) 308
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SinI GGWCC 1 cut(s) 356
SseBI AGGCCT 1 cut(s) 328
SsiI CCGC 5 cut(s) 24, 43, 45, 64, 78
SspDI GGCGCC 1 cut(s) 306
SspMI CTAG 1 cut(s) 324
StuI AGGCCT 1 cut(s) 328
StyD4I CCNGG 4 cut(s) 309, 328, 337, 346
StyI CCWWGG 2 cut(s) 93, 323
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 2 cut(s) 54, 249
TaqII GACCGA 1 cut(s) 249
TauI GCSGC 3 cut(s) 27, 45, 48
TseI GCWGC 4 cut(s) 66, 87, 143, 386
TspDTI ATGAA 1 cut(s) 49
VneI GTGCAC 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 356
XmaJI CCTAGG 1 cut(s) 323
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.