Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Reverse (-)

58349611 .. 58352130

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0419400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTGTACTAATGAATTTGGTATTCTTATTCTTTTCATTTTGCAGGTTATTAAACTACACGAGGAATTTTTTGTCCCTGGAGAAGTGATAATGGAACCTGGAAATGCATGTGGTAGATCAAATTTATTTTGTCTGTCATGGTGTACTGGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATTCTAAGACAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGAACAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAGAAGCCAGGGCAGATGGAAACGGGGCAGAGCATGCATTGCTACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCACCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTTTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

198

Amino Acids

21.59

Weight (kDa)

5.61

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AclWI	GGATC	2 cut(s)	182, 343
AcsI	RAATTY	3 cut(s)	14, 65, 121
AfaI	GTAC	2 cut(s)	7, 145
AgsI	TTSAA	3 cut(s)	200, 233, 269
AjnI	CCWGG	4 cut(s)	76, 97, 160, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw21I	GWGCWC	2 cut(s)	469, 513
Alw44I	GTGCAC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	182, 343
AoxI	GGCC	1 cut(s)	532
ApaLI	GTGCAC	1 cut(s)	509
ApeKI	GCWGC	2 cut(s)	178, 206
ApoI	RAATTY	3 cut(s)	14, 65, 121
AspLEI	GCGC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	469, 513
BbvI	GCAGC	2 cut(s)	190, 218
BccI	CCATC	2 cut(s)	159, 389
BciT130I	CCWGG	4 cut(s)	78, 99, 162, 388
BfaI	CTAG	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	2 cut(s)	179, 207
BlsI	GCNGC	2 cut(s)	180, 208
Bme1390I	CCNGG	4 cut(s)	78, 99, 162, 388
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	4 cut(s)	78, 99, 162, 388
BmsI	GCATC	1 cut(s)	193
BpmI	CTGGAG	2 cut(s)	99, 144
BpuEI	CTTGAG	2 cut(s)	177, 453
BsaBI	GATNNNNATC	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	76, 387, 535
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	2 cut(s)	416, 458
Bse8I	GATNNNNATC	1 cut(s)	580
BseBI	CCWGG	4 cut(s)	78, 99, 162, 388
BseDI	CCNNGG	3 cut(s)	76, 387, 535
BseGI	GGATG	1 cut(s)	170
BseJI	GATNNNNATC	1 cut(s)	580
BseMI	GCAATG	2 cut(s)	416, 458
BseNI	ACTGG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	2 cut(s)	190, 218
BsgI	GTGCAG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	534
BsiHKAI	GWGCWC	2 cut(s)	469, 513
BslFI	GGGAC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	3 cut(s)	315, 469, 513
Bsp143I	GATC	3 cut(s)	116, 187, 335
BspANI	GGCC	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	182, 343
BspQI	GCTCTTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	416, 458
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	76, 387, 535
BssMI	GATC	3 cut(s)	116, 187, 335
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	4 cut(s)	78, 99, 162, 388
Bst6I	CTCTTC	1 cut(s)	218
BstAPI	GCANNNNNTGC	3 cut(s)	175, 413, 418
BstC8I	GCNNGC	3 cut(s)	156, 414, 465
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	3 cut(s)	119, 190, 338
BstMBI	GATC	3 cut(s)	116, 187, 335
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 413, 418
BstNI	CCWGG	4 cut(s)	78, 99, 162, 388
BstNSI	RCATGY	3 cut(s)	111, 158, 416
BstSCI	CCNGG	4 cut(s)	76, 97, 160, 386
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	190, 218
BsuRI	GGCC	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	170
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	3 cut(s)	156, 414, 465
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	356
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	6, 144
CviAII	CATG	6 cut(s)	108, 138, 155, 185, 215, 413
CviJI	RGCY	8 cut(s)	181, 209, 228, 265, 296, 313, 386, 534
CviKI_1	RGCY	8 cut(s)	181, 209, 228, 265, 296, 313, 386, 534
CviQI	GTAC	2 cut(s)	6, 144
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	118, 189, 337
DpnII	GATC	3 cut(s)	116, 187, 335
DraI	TTTAAA	2 cut(s)	495, 580
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	315
EcoRII	CCWGG	4 cut(s)	76, 97, 160, 386
EcoT14I	CCWWGG	1 cut(s)	535
EcoT22I	ATGCAT	2 cut(s)	109, 418
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	6 cut(s)	111, 141, 158, 188, 218, 416
FaiI	YATR	9 cut(s)	109, 139, 156, 186, 216, 261, 299, 318, 414
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	6 cut(s)	107, 137, 154, 184, 214, 412
Fnu4HI	GCNGC	2 cut(s)	179, 207
FokI	GGATG	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	179, 207
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	2 cut(s)	179, 207
GsuI	CTGGAG	2 cut(s)	99, 144
HaeIII	GGCC	1 cut(s)	534
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	6 cut(s)	111, 141, 158, 188, 218, 416
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HinfI	GANTC	2 cut(s)	302, 556
Hpy166II	GTNNAC	3 cut(s)	6, 144, 511
Hpy188III	TCNNGA	3 cut(s)	185, 200, 269
Hpy8I	GTNNAC	3 cut(s)	6, 144, 511
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	239
HpyCH4V	TGCA	6 cut(s)	43, 107, 178, 206, 416, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 413, 418
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	111, 141, 158, 188, 218, 416
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	116, 187, 335
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	2 cut(s)	190, 218
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	525
MalI	GATC	3 cut(s)	118, 189, 337
MboI	GATC	3 cut(s)	116, 187, 335
MboII	GAAGA	3 cut(s)	235, 511, 514
MfeI	CAATTG	1 cut(s)	519
MhlI	GDGCHC	3 cut(s)	315, 469, 513
MluCI	AATT	5 cut(s)	14, 65, 121, 244, 519
MnlI	CCTC	6 cut(s)	55, 192, 201, 286, 524, 570
Mph1103I	ATGCAT	2 cut(s)	109, 418
MseI	TTAA	3 cut(s)	51, 494, 579
MspR9I	CCNGG	4 cut(s)	78, 99, 162, 388
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	4 cut(s)	78, 99, 162, 388
MwoI	GCNNNNNNNGC	3 cut(s)	175, 413, 418
NdeII	GATC	3 cut(s)	116, 187, 335
NlaIII	CATG	6 cut(s)	111, 141, 158, 188, 218, 416
NlaIV	GGNNCC	1 cut(s)	96
NsiI	ATGCAT	2 cut(s)	109, 418
NspI	RCATGY	3 cut(s)	111, 158, 416
PaeI	GCATGC	2 cut(s)	158, 416
PagI	TCATGA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	302, 556
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	180, 208
Psp6I	CCWGG	4 cut(s)	76, 97, 160, 386
PspGI	CCWGG	4 cut(s)	76, 97, 160, 386
PspN4I	GGNNCC	1 cut(s)	96
RsaI	GTAC	2 cut(s)	7, 145
RsaNI	GTAC	2 cut(s)	6, 144
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	51, 494, 579
SatI	GCNGC	2 cut(s)	179, 207
Sau3AI	GATC	3 cut(s)	116, 187, 335
ScrFI	CCNGG	4 cut(s)	78, 99, 162, 388
SduI	GDGCHC	3 cut(s)	315, 469, 513
SetI	ASST	6 cut(s)	48, 100, 267, 487, 493, 516
SfaNI	GCATC	1 cut(s)	193
SmiI	ATTTAAAT	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	192, 468
SmoI	CTYRAG	2 cut(s)	192, 468
SphI	GCATGC	2 cut(s)	158, 416
Sse9I	AATT	5 cut(s)	14, 65, 121, 244, 519
SseBI	AGGCCT	1 cut(s)	534
SspMI	CTAG	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	4 cut(s)	76, 97, 160, 386
StyI	CCWWGG	1 cut(s)	535
SwaI	ATTTAAAT	1 cut(s)	580
TasI	AATT	5 cut(s)	14, 65, 121, 244, 519
TatI	WGTACW	2 cut(s)	5, 143
TfiI	GAWTC	2 cut(s)	302, 556
Tru1I	TTAA	3 cut(s)	51, 494, 579
Tru9I	TTAA	3 cut(s)	51, 494, 579
TseI	GCWGC	2 cut(s)	178, 206
TspDTI	ATGAA	4 cut(s)	25, 27, 237, 294
VneI	GTGCAC	1 cut(s)	509
XapI	RAATTY	3 cut(s)	14, 65, 121
XceI	RCATGY	3 cut(s)	111, 158, 416
XspI	CTAG	1 cut(s)	525
Zsp2I	ATGCAT	2 cut(s)	109, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.