Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Reverse (-)

183844 .. 186201

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001755.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgctacatctattaaaggactaccctcgtgctaaccaggtttggaatgcttttattatccctattagtgtggctcatgctttcaatcttaagtgggatggctggcttgctgccaacttgcattgtcataccagctgctataatactttcaagcgcaggaatggcggccgcaacaagcacggccgcggccacaccaagttcatccgctgctccaactgtggcaagtgctgccctaaggacaaggctatcaagagggtcttggtgaggaacatcgtggagcaagctgcggtgagagatgtgcaggaggcttgtgtctatgagcaatacactctgccgaagctgtatgctaagatgcagtactgtgtgtcctgtgccattcactctcacgttgtgagggttaggtctcgcaccaacaggaggaaccgtgaccctccacagagattcatcagacgcagggatgatgccccaaggcccggagcacctggtcagggaccccgacctgctggagctggtgctcctgctcgtccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

176

Amino Acids

20.08

Weight (kDa)

10.47

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AccII	CGCG	1 cut(s)	186
AciI	CCGC	6 cut(s)	165, 169, 184, 186, 205, 287
AcoI	YGGCCR	3 cut(s)	166, 181, 187
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	417, 473, 488
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	85, 151
AjnI	CCWGG	2 cut(s)	36, 481
AluBI	AGCT	4 cut(s)	135, 284, 340, 509
AluI	AGCT	4 cut(s)	135, 284, 340, 509
Alw21I	GWGCWC	2 cut(s)	481, 517
Alw26I	GTCTC	1 cut(s)	408
AoxI	GGCC	4 cut(s)	166, 181, 187, 470
ApeKI	GCWGC	5 cut(s)	110, 135, 207, 228, 284
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	471, 491
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	2 cut(s)	274, 301
AvaII	GGWCC	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	234
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	481, 517
BbvI	GCAGC	5 cut(s)	97, 122, 194, 215, 271
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	38, 483
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	408
BfrI	CTTAAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	9 cut(s)	111, 136, 166, 169, 184, 187, 208, 229, 285
BlsI	GCNGC	9 cut(s)	112, 137, 167, 170, 185, 188, 209, 230, 286
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	3 cut(s)	38, 474, 483
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	2 cut(s)	471, 491
BmiI	GGNNCC	3 cut(s)	422, 492, 493
BmrFI	CCNGG	3 cut(s)	38, 474, 483
BmsI	GCATC	2 cut(s)	342, 451
BpmI	CTGGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	184, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	417, 473, 488
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	38, 483
BseDI	CCNNGG	2 cut(s)	184, 467
BseGI	GGATG	3 cut(s)	103, 201, 463
BseLI	CCNNNNNNNGG	3 cut(s)	417, 473, 488
BseX3I	CGGCCG	2 cut(s)	166, 181
BseXI	GCAGC	5 cut(s)	97, 122, 194, 215, 271
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	2 cut(s)	169, 184
BshFI	GGCC	4 cut(s)	168, 183, 189, 472
BsiEI	CGRYCG	2 cut(s)	169, 184
BsiHKAI	GWGCWC	2 cut(s)	481, 517
BsiSI	CCGG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	417, 473, 488
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	168, 183, 189, 472
Bso31I	GGTCTC	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	481, 517
BspACI	CCGC	6 cut(s)	165, 169, 184, 186, 205, 287
BspANI	GGCC	4 cut(s)	168, 183, 189, 472
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	3 cut(s)	422, 492, 493
BspMI	ACCTGC	1 cut(s)	508
BspTI	CTTAAG	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	184, 467
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	38, 483
Bst4CI	ACNGT	3 cut(s)	218, 362, 425
BstAFI	CTTAAG	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	104, 108, 282
BstDEI	CTNAG	2 cut(s)	234, 348
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	103, 201, 463
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	408
BstMCI	CGRYCG	2 cut(s)	169, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 228
BstNI	CCWGG	2 cut(s)	38, 483
BstSCI	CCNGG	3 cut(s)	36, 472, 481
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	5 cut(s)	97, 122, 194, 215, 271
BstZI	CGGCCG	2 cut(s)	166, 181
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	168, 183, 189, 472
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	103, 201, 463
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	3 cut(s)	104, 108, 282
CciNI	GCGGCCGC	1 cut(s)	166
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	471, 491
Cfr42I	CCGCGG	1 cut(s)	187
CseI	GACGC	1 cut(s)	459
CsiI	ACCWGGT	2 cut(s)	36, 481
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	77
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	234, 348
DraIII	CACNNNGTG	1 cut(s)	391
EaeI	YGGCCR	3 cut(s)	166, 181, 187
EagI	CGGCCG	2 cut(s)	166, 181
EclXI	CGGCCG	2 cut(s)	166, 181
Eco130I	CCWWGG	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	491
Eco52I	CGGCCG	2 cut(s)	166, 181
Eco81I	CCTNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	36, 481
EcoT14I	CCWWGG	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	1 cut(s)	80
FaiI	YATR	5 cut(s)	78, 129, 141, 318, 345
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	9 cut(s)	111, 136, 166, 169, 184, 187, 208, 229, 285
FokI	GGATG	3 cut(s)	110, 188, 470
Fsp4HI	GCNGC	9 cut(s)	111, 136, 166, 169, 184, 187, 208, 229, 285
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	9 cut(s)	111, 136, 166, 169, 184, 187, 208, 229, 285
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	168, 183, 189, 472
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	274, 301
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	218, 362, 425
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	121, 301, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 228
HpyF3I	CTNAG	2 cut(s)	234, 348
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	154
KflI	GGGWCCC	1 cut(s)	491
KspI	CCGCGG	1 cut(s)	187
LmnI	GCTCC	5 cut(s)	215, 277, 476, 506, 520
Lsp1109I	GCAGC	5 cut(s)	97, 122, 194, 215, 271
LweI	GCATC	2 cut(s)	342, 451
MabI	ACCWGGT	2 cut(s)	36, 481
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	425
MhlI	GDGCHC	2 cut(s)	481, 517
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	7 cut(s)	36, 246, 258, 298, 387, 411, 441
MseI	TTAA	2 cut(s)	14, 90
MspA1I	CMGCKG	3 cut(s)	135, 186, 207
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	3 cut(s)	38, 474, 483
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	2 cut(s)	38, 483
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	162, 228
NciI	CCSGG	1 cut(s)	474
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	3 cut(s)	422, 492, 493
NmuCI	GTSAC	1 cut(s)	425
NotI	GCGGCCGC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	9 cut(s)	112, 137, 167, 170, 185, 188, 209, 230, 286
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	36, 481
PspGI	CCWGG	2 cut(s)	36, 481
PspN4I	GGNNCC	3 cut(s)	422, 492, 493
PspPI	GGNCC	2 cut(s)	471, 491
PspPPI	RGGWCCY	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacII	CCGCGG	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	14, 90
SatI	GCNGC	9 cut(s)	111, 136, 166, 169, 184, 187, 208, 229, 285
Sau96I	GGNCC	2 cut(s)	471, 491
ScaI	AGTACT	1 cut(s)	359
ScrFI	CCNGG	3 cut(s)	38, 474, 483
SduI	GDGCHC	2 cut(s)	481, 517
SetI	ASST	9 cut(s)	42, 137, 286, 342, 390, 404, 484, 502, 511
SexAI	ACCWGGT	2 cut(s)	36, 481
SfaNI	GCATC	2 cut(s)	342, 451
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SsiI	CCGC	6 cut(s)	165, 169, 184, 186, 205, 287
StyD4I	CCNGG	3 cut(s)	36, 472, 481
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	3 cut(s)	218, 362, 425
TaiI	ACGT	1 cut(s)	390
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	4 cut(s)	168, 171, 186, 189
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	14, 90
Tru9I	TTAA	2 cut(s)	14, 90
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	5 cut(s)	110, 135, 207, 228, 284
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	190, 433
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	491
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.