Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

3113297 .. 3115580

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G042400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACTTTCAAGAGAAGAAACGGCGGGAGAAACAAGCATGGCCGTGGCCATGTGAAGTTCATCCGTTGCTCTAACTGTGGCAAATGCTGCCCTAAGGACAAAGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAGCAAGCTGCAGTTAGGGATGTCCAGGAGGCTTGTGTTTATGATGCTTACACTCTTCCTAAGCTGTATGCAAAGATGCAATACTGTGTTTCTTGCGCCATCCACTCTCACGTTGTGAGGGTTCGATCGCGGGAAAACAGGAGGAACCGTGAACCCCCACAGCGTTTCAGGCGTCGGGAGGATACACCTAGGCCTGCTGCTCCTGGTGCACCTGGTCAGGCTCCACGCCCAGCTGGAGCACCAGCTGCTCGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

131

Amino Acids

14.78

Weight (kDa)

10.9

Isoelectric Point (pI)

73.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	265
AciI	CCGC	2 cut(s)	24, 265
AcoI	YGGCCR	3 cut(s)	40, 46, 386
AcyI	GRCGYC	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	159, 337, 346
AluBI	AGCT	5 cut(s)	104, 143, 199, 368, 380
AluI	AGCT	5 cut(s)	104, 143, 199, 368, 380
Alw21I	GWGCWC	2 cut(s)	346, 376
Alw44I	GTGCAC	1 cut(s)	342
AoxI	GGCC	4 cut(s)	40, 46, 326, 386
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	4 cut(s)	87, 143, 332, 380
AspA2I	CCTAGG	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	133
AvrII	CCTAGG	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	346, 376
BbvI	GCAGC	4 cut(s)	74, 130, 319, 367
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	2 cut(s)	27, 37
BciT130I	CCWGG	3 cut(s)	161, 339, 348
BciVI	GTATCC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	4 cut(s)	88, 144, 333, 381
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	4 cut(s)	89, 145, 334, 382
Bme1390I	CCNGG	3 cut(s)	161, 339, 348
BmiI	GGNNCC	2 cut(s)	281, 357
BmrFI	CCNGG	3 cut(s)	161, 339, 348
BmsI	GCATC	2 cut(s)	169, 201
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	43, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	161, 339, 348
BseDI	CCNNGG	2 cut(s)	43, 323
BseGI	GGATG	3 cut(s)	60, 160, 234
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	4 cut(s)	74, 130, 319, 367
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	4 cut(s)	42, 48, 328, 388
BsiEI	CGRYCG	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	346, 376
BsnI	GGCC	4 cut(s)	42, 48, 328, 388
Bsp1286I	GDGCHC	2 cut(s)	346, 376
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	2 cut(s)	24, 265
BspANI	GGCC	4 cut(s)	42, 48, 328, 388
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	281, 357
BspMAI	CTGCAG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	43, 323
BssMI	GATC	1 cut(s)	260
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	3 cut(s)	161, 339, 348
Bst4CI	ACNGT	3 cut(s)	77, 221, 284
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	307
BstAPI	GCANNNNNTGC	2 cut(s)	87, 380
BstC8I	GCNNGC	2 cut(s)	141, 330
BstDEI	CTNAG	2 cut(s)	93, 195
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	60, 160, 234
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 304, 341, 380
BstNI	CCWGG	3 cut(s)	161, 339, 348
BstSCI	CCNGG	3 cut(s)	159, 337, 346
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	4 cut(s)	74, 130, 319, 367
Bsu36I	CCTNAGG	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	42, 48, 328, 388
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	60, 160, 234
Cac8I	GCNNGC	2 cut(s)	141, 330
CfoI	GCGC	1 cut(s)	233
CseI	GACGC	1 cut(s)	296
CsiI	ACCWGGT	1 cut(s)	346
CviAII	CATG	3 cut(s)	38, 50, 390
DdeI	CTNAG	2 cut(s)	93, 195
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	3 cut(s)	40, 46, 386
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	93
EcoRII	CCWGG	3 cut(s)	159, 337, 346
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	3 cut(s)	41, 53, 393
FaiI	YATR	5 cut(s)	39, 51, 177, 204, 391
FatI	CATG	3 cut(s)	37, 49, 389
FauI	CCCGC	2 cut(s)	17, 258
Fnu4HI	GCNGC	4 cut(s)	88, 144, 333, 381
FokI	GGATG	3 cut(s)	47, 167, 221
Fsp4HI	GCNGC	4 cut(s)	88, 144, 333, 381
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	4 cut(s)	88, 144, 333, 381
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	4 cut(s)	42, 48, 328, 388
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	41, 53, 393
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	287, 344
Hpy188III	TCNNGA	3 cut(s)	10, 109, 311
Hpy8I	GTNNAC	2 cut(s)	287, 344
Hpy99I	CGWCG	1 cut(s)	312
HpyCH4III	ACNGT	3 cut(s)	77, 221, 284
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	146, 206, 214, 344
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 304, 341, 380
HpyF3I	CTNAG	2 cut(s)	93, 195
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	41, 53, 393
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	340, 361, 371
Lsp1109I	GCAGC	4 cut(s)	74, 130, 319, 367
LweI	GCATC	2 cut(s)	169, 201
MabI	ACCWGGT	1 cut(s)	346
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	246
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	2 cut(s)	27, 182
MhlI	GDGCHC	2 cut(s)	346, 376
MlsI	TGGCCA	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	48
MnlI	CCTC	6 cut(s)	105, 117, 157, 246, 270, 307
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	368, 380
MspR9I	CCNGG	3 cut(s)	161, 339, 348
MvaI	CCWGG	3 cut(s)	161, 339, 348
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	87, 304, 341, 380
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	41, 53, 393
NlaIV	GGNNCC	2 cut(s)	281, 357
NmeAIII	GCCGAG	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	89, 145, 334, 382
Ple19I	CGATCG	1 cut(s)	263
Psp6I	CCWGG	3 cut(s)	159, 337, 346
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	3 cut(s)	159, 337, 346
PspN4I	GGNNCC	2 cut(s)	281, 357
PstI	CTGCAG	1 cut(s)	148
PvuI	CGATCG	1 cut(s)	263
PvuII	CAGCTG	2 cut(s)	368, 380
RseI	CAYNNNNRTG	1 cut(s)	42
SatI	GCNGC	4 cut(s)	88, 144, 333, 381
Sau3AI	GATC	1 cut(s)	260
ScrFI	CCNGG	3 cut(s)	161, 339, 348
SduI	GDGCHC	2 cut(s)	346, 376
SetI	ASST	9 cut(s)	106, 116, 145, 201, 249, 325, 349, 370, 382
SexAI	ACCWGGT	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	169, 201
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	42
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	24, 265
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	3 cut(s)	159, 337, 346
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	3 cut(s)	77, 221, 284
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	259
TseI	GCWGC	4 cut(s)	87, 143, 332, 380
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	53
VneI	GTGCAC	1 cut(s)	342
XmaJI	CCTAGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.