Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

3460867 .. 3462472

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g04470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGACTTTCAAGAGAAGAAATGGCGGCCGGAACAAGCACGGCCGCGGCCACGTGAAGTTCATCCGCTGCTCCAACTGCGGGAAATGCTGCCCCAAGGACAAAGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAGCAGGCTGCAGTAAGGGATGTTCAGGAGGCTTGTGTTTACGATGGTTACACTCTTCCTAAGCTGTATGCTAAGATGCAATACTGCGTTTCTTGTGCCATCCACTCCCACGTTGTGAGGGTTCGGTCTCGCGAAAACAGGAGGAACCGTGAGCCCCCTCAGCGTTTCAGGCGCCGGGAGGATACACCTAGGCCTGGTGCACCTGGTGCTCCTGGTCAGGGTCCACGCCCTGTTGGAGCTGGAGCGCCAGCTGCTCGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

10.9

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccII	CGCG	2 cut(s)	45, 267
AciI	CCGC	5 cut(s)	24, 43, 45, 64, 78
AcoI	YGGCCR	3 cut(s)	25, 40, 46
AcvI	CACGTG	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	307
AdeI	CACNNNGTG	2 cut(s)	250, 341
AfiI	CCNNNNNNNGG	3 cut(s)	78, 329, 353
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	328, 337, 346
AluBI	AGCT	4 cut(s)	104, 199, 374, 386
AluI	AGCT	4 cut(s)	104, 199, 374, 386
Alw21I	GWGCWC	2 cut(s)	337, 346
Alw26I	GTCTC	1 cut(s)	267
Alw44I	GTGCAC	1 cut(s)	333
AoxI	GGCC	4 cut(s)	25, 40, 46, 326
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	66, 87, 143, 386
AspA2I	CCTAGG	1 cut(s)	323
AspLEI	GCGC	2 cut(s)	309, 382
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	52
Bbv12I	GWGCWC	2 cut(s)	337, 346
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	53, 74, 130, 373
BccI	CCATC	2 cut(s)	173, 242
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	3 cut(s)	330, 339, 348
BciVI	GTATCC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	2 cut(s)	310, 383
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	7 cut(s)	26, 44, 47, 68, 89, 145, 388
Bme1390I	CCNGG	4 cut(s)	311, 330, 339, 348
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	3 cut(s)	281, 308, 357
BmrFI	CCNGG	4 cut(s)	311, 330, 339, 348
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	2 cut(s)	195, 294
BpuMI	CCSGG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	43, 93, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 329, 353
BseBI	CCWGG	3 cut(s)	330, 339, 348
BseDI	CCNNGG	3 cut(s)	43, 93, 323
BseGI	GGATG	3 cut(s)	60, 160, 234
BseLI	CCNNNNNNNGG	3 cut(s)	78, 329, 353
BseMII	CTCAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	337
BseX3I	CGGCCG	2 cut(s)	25, 40
BseXI	GCAGC	4 cut(s)	53, 74, 130, 373
Bsh1236I	CGCG	2 cut(s)	45, 267
Bsh1285I	CGRYCG	2 cut(s)	28, 43
BshFI	GGCC	4 cut(s)	27, 42, 48, 328
BshNI	GGYRCC	1 cut(s)	306
BsiEI	CGRYCG	2 cut(s)	28, 43
BsiHKAI	GWGCWC	2 cut(s)	337, 346
BsiSI	CCGG	2 cut(s)	28, 310
BslI	CCNNNNNNNGG	3 cut(s)	78, 329, 353
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	4 cut(s)	27, 42, 48, 328
Bso31I	GGTCTC	1 cut(s)	267
Bsp1286I	GDGCHC	3 cut(s)	291, 337, 346
Bsp68I	TCGCGA	1 cut(s)	267
BspACI	CCGC	5 cut(s)	24, 43, 45, 64, 78
BspANI	GGCC	4 cut(s)	27, 42, 48, 328
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	2 cut(s)	45, 267
BspLI	GGNNCC	3 cut(s)	281, 308, 357
BspMAI	CTGCAG	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	43, 93, 323
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	93, 323
Bst2UI	CCWGG	3 cut(s)	330, 339, 348
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	141, 384
BstDEI	CTNAG	3 cut(s)	195, 207, 294
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	60, 160, 234
BstFNI	CGCG	2 cut(s)	45, 267
BstH2I	RGCGCY	2 cut(s)	310, 383
BstHHI	GCGC	2 cut(s)	309, 382
BstMAI	GTCTC	1 cut(s)	267
BstMCI	CGRYCG	2 cut(s)	28, 43
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 84, 295, 304, 341, 386
BstNI	CCWGG	3 cut(s)	330, 339, 348
BstSCI	CCNGG	4 cut(s)	309, 328, 337, 346
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	337
BstUI	CGCG	2 cut(s)	45, 267
BstV1I	GCAGC	4 cut(s)	53, 74, 130, 373
BstZI	CGGCCG	2 cut(s)	25, 40
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	27, 42, 48, 328
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	60, 160, 234
BtuMI	TCGCGA	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	141, 384
CfoI	GCGC	2 cut(s)	309, 382
Cfr13I	GGNCC	1 cut(s)	356
Cfr42I	CCGCGG	1 cut(s)	46
CsiI	ACCWGGT	1 cut(s)	337
CviAII	CATG	1 cut(s)	396
DdeI	CTNAG	3 cut(s)	195, 207, 294
DinI	GGCGCC	1 cut(s)	308
DraIII	CACNNNGTG	2 cut(s)	250, 341
EaeI	YGGCCR	3 cut(s)	25, 40, 46
EagI	CGGCCG	2 cut(s)	25, 40
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EclXI	CGGCCG	2 cut(s)	25, 40
Eco130I	CCWWGG	2 cut(s)	93, 323
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	356
Eco52I	CGGCCG	2 cut(s)	25, 40
Eco72I	CACGTG	1 cut(s)	52
EcoRII	CCWGG	3 cut(s)	328, 337, 346
EcoT14I	CCWWGG	2 cut(s)	93, 323
EcoT38I	GRGCYC	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
ErhI	CCWWGG	2 cut(s)	93, 323
FaeI	CATG	1 cut(s)	399
FaiI	YATR	2 cut(s)	204, 397
FatI	CATG	1 cut(s)	395
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
FokI	GGATG	3 cut(s)	47, 167, 221
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	2 cut(s)	308, 381
GluI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	2 cut(s)	310, 383
HaeIII	GGCC	4 cut(s)	27, 42, 48, 328
HapII	CCGG	2 cut(s)	28, 310
HhaI	GCGC	2 cut(s)	309, 382
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	2 cut(s)	307, 380
HinP1I	GCGC	2 cut(s)	307, 380
HpaII	CCGG	2 cut(s)	28, 310
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	175, 335, 359
Hpy188III	TCNNGA	4 cut(s)	10, 109, 161, 266
Hpy8I	GTNNAC	3 cut(s)	175, 335, 359
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	2 cut(s)	51, 246
HpyCH4V	TGCA	3 cut(s)	146, 214, 335
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 84, 295, 304, 341, 386
HpyF3I	CTNAG	3 cut(s)	195, 207, 294
HpySE526I	ACGT	2 cut(s)	51, 246
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	2 cut(s)	307, 380
KasI	GGCGCC	1 cut(s)	306
KspI	CCGCGG	1 cut(s)	46
LmnI	GCTCC	4 cut(s)	74, 349, 371, 377
Lsp1109I	GCAGC	4 cut(s)	53, 74, 130, 373
LweI	GCATC	1 cut(s)	201
MabI	ACCWGGT	1 cut(s)	337
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	51, 246
MaeIII	GTNAC	1 cut(s)	182
MboII	GAAGA	2 cut(s)	27, 182
MhlI	GDGCHC	3 cut(s)	291, 337, 346
Mly113I	GGCGCC	1 cut(s)	307
MmeI	TCCRAC	2 cut(s)	96, 349
MnlI	CCTC	7 cut(s)	105, 117, 157, 246, 270, 303, 307
MspA1I	CMGCKG	3 cut(s)	45, 66, 386
MspI	CCGG	2 cut(s)	28, 310
MspR9I	CCNGG	4 cut(s)	311, 330, 339, 348
MvaI	CCWGG	3 cut(s)	330, 339, 348
MvnI	CGCG	2 cut(s)	45, 267
MwoI	GCNNNNNNNGC	6 cut(s)	75, 84, 295, 304, 341, 386
NarI	GGCGCC	1 cut(s)	307
NciI	CCSGG	1 cut(s)	311
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	3 cut(s)	281, 308, 357
NruI	TCGCGA	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	328
PkrI	GCNGC	7 cut(s)	26, 44, 47, 68, 89, 145, 388
PluTI	GGCGCC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	3 cut(s)	328, 337, 346
PspCI	CACGTG	1 cut(s)	52
PspGI	CCWGG	3 cut(s)	328, 337, 346
PspN4I	GGNNCC	3 cut(s)	281, 308, 357
PspPI	GGNCC	1 cut(s)	356
PsrI	GAACNNNNNNTAC	2 cut(s)	141, 173
PstI	CTGCAG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	386
RruI	TCGCGA	1 cut(s)	267
SacII	CCGCGG	1 cut(s)	46
SatI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
Sau96I	GGNCC	1 cut(s)	356
ScrFI	CCNGG	4 cut(s)	311, 330, 339, 348
SduI	GDGCHC	3 cut(s)	291, 337, 346
SetI	ASST	9 cut(s)	54, 106, 116, 201, 249, 325, 340, 376, 388
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	144
SfoI	GGCGCC	1 cut(s)	308
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	356
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	5 cut(s)	24, 43, 45, 64, 78
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	4 cut(s)	309, 328, 337, 346
StyI	CCWWGG	2 cut(s)	93, 323
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	2 cut(s)	54, 249
TaqII	GACCGA	1 cut(s)	249
TauI	GCSGC	3 cut(s)	27, 45, 48
TseI	GCWGC	4 cut(s)	66, 87, 143, 386
TspDTI	ATGAA	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	356
XmaJI	CCTAGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.