Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003160.1

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

135195 .. 137096

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003160.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgactttcaagagaagaaatggcgggcgcaacaagcacggccgtggccacactaagttcatccgctgctccaactgcggcaaatgctgccctaaggacaaagctatcaagaggtttctggtgaggaacattgttgagcaagctgctgttagggatgtccaggaggcttgtgtttatgaagcctacactcttcctaagctgtatgcaaagatgcagtactgtgtttcctgtgctatccactctcatgtagtgagggttcgatctagggagaagaggaggagccgtgaggcccctcagcgtttcaggcgccgggaggatcagcctaggcctagtgcaccaggtggacctggtcaggctccacgccctgctgctggagtggcaactgcccgtccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

131

Amino Acids

14.89

Weight (kDa)

10.92

Isoelectric Point (pI)

75.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AciI	CCGC	3 cut(s)	24, 64, 78
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	40, 46
AcyI	GRCGYC	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	159, 337, 346
AleI	CACNNNNGTG	1 cut(s)	42
AluBI	AGCT	3 cut(s)	104, 143, 199
AluI	AGCT	3 cut(s)	104, 143, 199
Alw21I	GWGCWC	1 cut(s)	337
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	4 cut(s)	40, 46, 288, 326
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	66, 87, 143, 368
AspA2I	CCTAGG	1 cut(s)	323
AspLEI	GCGC	2 cut(s)	30, 309
AspS9I	GGNCC	2 cut(s)	289, 344
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	344
AvrII	CCTAGG	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	337
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	53, 74, 130, 355
BceAI	ACGGC	3 cut(s)	27, 55, 267
BciT130I	CCWGG	3 cut(s)	161, 339, 348
BcnI	CCSGG	1 cut(s)	311
BfaI	CTAG	3 cut(s)	264, 324, 330
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	5 cut(s)	67, 79, 88, 144, 369
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	5 cut(s)	68, 80, 89, 145, 370
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	4 cut(s)	161, 311, 339, 348
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	289, 344
BmiI	GGNNCC	4 cut(s)	281, 291, 308, 357
BmrFI	CCNGG	4 cut(s)	161, 311, 339, 348
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	2 cut(s)	195, 294
BpuMI	CCSGG	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	43, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	161, 339, 348
BseDI	CCNNGG	2 cut(s)	43, 323
BseGI	GGATG	2 cut(s)	60, 160
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	289, 292
BseSI	GKGCMC	1 cut(s)	337
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	53, 74, 130, 355
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	4 cut(s)	42, 48, 290, 328
BshNI	GGYRCC	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	371
BsnI	GGCC	4 cut(s)	42, 48, 290, 328
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	260, 316
BspACI	CCGC	3 cut(s)	24, 64, 78
BspANI	GGCC	4 cut(s)	42, 48, 290, 328
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	4 cut(s)	281, 291, 308, 357
BspPI	GGATC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	43, 323
BssMI	GATC	2 cut(s)	260, 316
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	3 cut(s)	161, 339, 348
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	2 cut(s)	195, 266
BstACI	GRCGYC	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	26, 141
BstDEI	CTNAG	4 cut(s)	54, 93, 195, 294
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	60, 160
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	30, 309
BstKTI	GATC	2 cut(s)	263, 319
BstMBI	GATC	2 cut(s)	260, 316
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 75, 84, 87, 304, 377
BstNI	CCWGG	3 cut(s)	161, 339, 348
BstSCI	CCNGG	4 cut(s)	159, 309, 337, 346
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	4 cut(s)	53, 74, 130, 355
BstZI	CGGCCG	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	42, 48, 290, 328
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	60, 160
Cac8I	GCNNGC	2 cut(s)	26, 141
CfoI	GCGC	2 cut(s)	30, 309
Cfr13I	GGNCC	2 cut(s)	289, 344
CsiI	ACCWGGT	2 cut(s)	337, 346
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	245, 393
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	4 cut(s)	54, 93, 195, 294
DinI	GGCGCC	1 cut(s)	308
DpnI	GATC	2 cut(s)	262, 318
DpnII	GATC	2 cut(s)	260, 316
DraIII	CACNNNGTG	1 cut(s)	341
EaeI	YGGCCR	2 cut(s)	40, 46
EagI	CGGCCG	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	195, 266
EarI	CTCTTC	2 cut(s)	195, 266
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	344
Eco52I	CGGCCG	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	3 cut(s)	159, 337, 346
EcoT14I	CCWWGG	1 cut(s)	323
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	2 cut(s)	248, 396
FaiI	YATR	4 cut(s)	177, 204, 246, 394
FatI	CATG	2 cut(s)	244, 392
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	5 cut(s)	67, 79, 88, 144, 369
FokI	GGATG	2 cut(s)	47, 167
Fsp4HI	GCNGC	5 cut(s)	67, 79, 88, 144, 369
FspBI	CTAG	3 cut(s)	264, 324, 330
GlaI	GCGC	2 cut(s)	29, 308
GluI	GCNGC	5 cut(s)	67, 79, 88, 144, 369
GsuI	CTGGAG	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	4 cut(s)	42, 48, 290, 328
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	2 cut(s)	30, 309
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	248, 396
Hin6I	GCGC	2 cut(s)	28, 307
HinP1I	GCGC	2 cut(s)	28, 307
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	335, 344
Hpy188III	TCNNGA	2 cut(s)	10, 109
Hpy8I	GTNNAC	2 cut(s)	335, 344
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	206, 214, 335
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 75, 84, 87, 304, 377
HpyF3I	CTNAG	4 cut(s)	54, 93, 195, 294
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	248, 396
HspAI	GCGC	2 cut(s)	28, 307
KasI	GGCGCC	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	260, 316
LmnI	GCTCC	3 cut(s)	74, 279, 361
Lsp1109I	GCAGC	4 cut(s)	53, 74, 130, 355
LweI	GCATC	1 cut(s)	201
MabI	ACCWGGT	2 cut(s)	337, 346
MaeI	CTAG	3 cut(s)	264, 324, 330
MalI	GATC	2 cut(s)	262, 318
MboI	GATC	2 cut(s)	260, 316
MboII	GAAGA	3 cut(s)	27, 182, 283
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	48
Mly113I	GGCGCC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	9 cut(s)	105, 117, 157, 246, 267, 270, 280, 303, 307
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MslI	CAYNNNNRTG	2 cut(s)	42, 243
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	4 cut(s)	161, 311, 339, 348
MvaI	CCWGG	3 cut(s)	161, 339, 348
MwoI	GCNNNNNNNGC	6 cut(s)	34, 75, 84, 87, 304, 377
NarI	GGCGCC	1 cut(s)	307
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	260, 316
NlaIII	CATG	2 cut(s)	248, 396
NlaIV	GGNNCC	4 cut(s)	281, 291, 308, 357
OliI	CACNNNNGTG	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	328
PflFI	GACNNNGTC	1 cut(s)	348
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	68, 80, 89, 145, 370
PluTI	GGCGCC	1 cut(s)	310
Psp6I	CCWGG	3 cut(s)	159, 337, 346
PspGI	CCWGG	3 cut(s)	159, 337, 346
PspN4I	GGNNCC	4 cut(s)	281, 291, 308, 357
PspPI	GGNCC	2 cut(s)	289, 344
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PsyI	GACNNNGTC	1 cut(s)	348
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	42, 243
SatI	GCNGC	5 cut(s)	67, 79, 88, 144, 369
Sau3AI	GATC	2 cut(s)	260, 316
Sau96I	GGNCC	2 cut(s)	289, 344
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	4 cut(s)	161, 311, 339, 348
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	6 cut(s)	106, 116, 145, 201, 343, 349
SexAI	ACCWGGT	2 cut(s)	337, 346
SfaNI	GCATC	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	308
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	2 cut(s)	42, 243
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	3 cut(s)	24, 64, 78
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	3 cut(s)	264, 324, 330
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	4 cut(s)	159, 309, 337, 346
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	259
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	81
TseI	GCWGC	4 cut(s)	66, 87, 143, 368
TspDTI	ATGAA	2 cut(s)	49, 192
Tth111I	GACNNNGTC	1 cut(s)	348
VneI	GTGCAC	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	344
XmaJI	CCTAGG	1 cut(s)	323
XspI	CTAG	3 cut(s)	264, 324, 330
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.