Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

59608256 .. 59610225

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG371700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACTTTCAAGCGCAGGAATGGCGGCCGCAACAAGCACGGCCGCGGCCACACCAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCTAAGGACAAGGCTATCAAGAGGGTCTTGGTGAGGAACATCGTGGAGCAAGCTGCGGTGAGAGATGTGCAGGAGGCTTGTGTCTATGAGCAATACACTCTGCCGAAGCTGTATGCTAAGATGCAGTACTGTGTGTCCTGTGCTATTCACTCTCACGTTGTGAGGGTTAGGTCTCGCACCAACAGGAGGAACCGTGACCCTCCACAGAGATTCATCAGACGCAGGGTAAGCTTCTTTTTACAGTTTATAGAAAACCTATGTTCACTTGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

121

Amino Acids

14.27

Weight (kDa)

10.47

Isoelectric Point (pI)

63.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 104	1.3e-52	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
AcoI	YGGCCR	3 cut(s)	25, 40, 46
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	3 cut(s)	143, 199, 321
AluI	AGCT	3 cut(s)	143, 199, 321
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	25, 40, 46
ApeKI	GCWGC	3 cut(s)	66, 87, 143
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	133, 160
AxyI	CCTNAGG	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	53, 74, 130
BceAI	ACGGC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	267
BisI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
BlsI	GCNGC	8 cut(s)	26, 29, 44, 47, 68, 80, 89, 145
BmcAI	AGTACT	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse21I	CCTNAGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseX3I	CGGCCG	2 cut(s)	25, 40
BseXI	GCAGC	3 cut(s)	53, 74, 130
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	2 cut(s)	28, 43
BshFI	GGCC	3 cut(s)	27, 42, 48
BsiEI	CGRYCG	2 cut(s)	28, 43
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	27, 42, 48
Bso31I	GGTCTC	1 cut(s)	267
BspACI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
BspANI	GGCC	3 cut(s)	27, 42, 48
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	43
Bst4CI	ACNGT	3 cut(s)	221, 284, 333
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	93, 207
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	267
BstMCI	CGRYCG	2 cut(s)	28, 43
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 75, 84, 87, 318
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	53, 74, 130
BstZI	CGGCCG	2 cut(s)	25, 40
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	27, 42, 48
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	141
CciNI	GCGGCCGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	15
Cfr42I	CCGCGG	1 cut(s)	46
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	217
CviJI	RGCY	8 cut(s)	27, 42, 48, 104, 143, 167, 199, 321
CviKI_1	RGCY	8 cut(s)	27, 42, 48, 104, 143, 167, 199, 321
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	93, 207
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	3 cut(s)	25, 40, 46
EagI	CGGCCG	2 cut(s)	25, 40
EclXI	CGGCCG	2 cut(s)	25, 40
Eco31I	GGTCTC	1 cut(s)	267
Eco52I	CGGCCG	2 cut(s)	25, 40
Eco81I	CCTNAGG	1 cut(s)	93
FaiI	YATR	4 cut(s)	177, 204, 338, 349
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
Fnu4HI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
HaeIII	GGCC	3 cut(s)	27, 42, 48
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	1 cut(s)	300
HphI	GGTGA	2 cut(s)	133, 160
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	353
HpyCH4III	ACNGT	3 cut(s)	221, 284, 333
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	160, 214
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 75, 84, 87, 318
HpyF3I	CTNAG	2 cut(s)	93, 207
HpySE526I	ACGT	1 cut(s)	246
HspAI	GCGC	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	74, 136
LpnPI	CCDG	4 cut(s)	146, 241, 259, 298
Lsp1109I	GCAGC	3 cut(s)	53, 74, 130
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	105, 117, 157, 246, 270, 300
MspA1I	CMGCKG	2 cut(s)	45, 66
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	5 cut(s)	21, 75, 84, 87, 318
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	284
NotI	GCGGCCGC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	8 cut(s)	26, 29, 44, 47, 68, 80, 89, 145
PspN4I	GGNNCC	1 cut(s)	281
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacII	CCGCGG	1 cut(s)	46
SatI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
ScaI	AGTACT	1 cut(s)	218
SetI	ASST	6 cut(s)	145, 201, 249, 263, 323, 348
SfaNI	GCATC	1 cut(s)	201
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SsiI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
TaaI	ACNGT	3 cut(s)	221, 284, 333
TaiI	ACGT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	5 cut(s)	27, 30, 45, 48, 81
TfiI	GAWTC	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	66, 87, 143
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	49, 292
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.