Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

33247527 .. 33247706

Gene Structure 180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGCAGTACTGTGTGTCCTGTGCTATTCACTCTAACGTTGTGAGGGTGAGGTCTCGCACCAACAAGAGGAACCGTGAGCCACCACAGAGATTCATCAGACGCAGGGATGATGCCCAAAGGCCTGGAGCACCTGGTCAGGGAACCCGACCTGCTGGAGCTGGTGTTCCTGCTCGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

59

Amino Acids

6.6

Weight (kDa)

11.86

Isoelectric Point (pI)

77.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 36	6.3e-12	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AclI	AACGTT	1 cut(s)	36
AfaI	GTAC	2 cut(s)	8, 175
AfiI	CCNNNNNNNGG	2 cut(s)	66, 137
AjnI	CCWGG	2 cut(s)	121, 130
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	57
AoxI	GGCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	123, 132
BcoDI	GTCTC	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	157
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	123, 132
BmiI	GGNNCC	2 cut(s)	71, 142
BmrFI	CCNGG	2 cut(s)	123, 132
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	2 cut(s)	144, 174
BsaI	GGTCTC	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 137
BseBI	CCWGG	2 cut(s)	123, 132
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	66, 137
BshFI	GGCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	66, 137
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	71, 142
BspMI	ACCTGC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	123, 132
Bst4CI	ACNGT	2 cut(s)	11, 74
BstF5I	GGATG	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	57
BstNI	CCWGG	2 cut(s)	123, 132
BstSCI	CCNGG	2 cut(s)	121, 130
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	112
BveI	ACCTGC	1 cut(s)	157
CseI	GACGC	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	7, 174
CviJI	RGCY	3 cut(s)	79, 121, 158
CviKI_1	RGCY	3 cut(s)	79, 121, 158
CviQI	GTAC	2 cut(s)	7, 174
Eco147I	AGGCCT	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	121, 130
FokI	GGATG	1 cut(s)	119
GsuI	CTGGAG	2 cut(s)	144, 174
HaeIII	GGCC	1 cut(s)	121
HgaI	GACGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	90
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	11, 74
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	4
HpySE526I	ACGT	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	125, 155
LweI	GCATC	1 cut(s)	100
MabI	ACCWGGT	1 cut(s)	130
MaeII	ACGT	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	130
MnlI	CCTC	3 cut(s)	36, 42, 60
MspR9I	CCNGG	2 cut(s)	123, 132
MvaI	CCWGG	2 cut(s)	123, 132
NlaIV	GGNNCC	2 cut(s)	71, 142
PceI	AGGCCT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	90
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	121, 130
PspGI	CCWGG	2 cut(s)	121, 130
PspN4I	GGNNCC	2 cut(s)	71, 142
RsaI	GTAC	2 cut(s)	8, 175
RsaNI	GTAC	2 cut(s)	7, 174
ScaI	AGTACT	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	123, 132
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	5 cut(s)	39, 53, 133, 151, 160
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	1 cut(s)	100
SseBI	AGGCCT	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	121, 130
TaaI	ACNGT	2 cut(s)	11, 74
TaiI	ACGT	1 cut(s)	39
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.