Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

3321839 .. 3323632

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGACTTTCAAGAGAAGAAACGGCGGCCGGAACAAGCACGGCCGTGGCCACGTGAAGTTCATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAAGCTATCAAGAGGTTTGTGGTGAGGAACATTGTTGAGCAGGCTGCAGTTAGGGATGTTCAGGAGGCTTGTGTTTACGATGGTTACACCCTTCCTAAGCTGTATGCTAAGATGCAATACTGCGTTTCTTGCGCCATCCACTCCCACGTTGTGAGGGTTCGGTCTCGCGAGAATAGGAGGAACCGTGAGCCCCCTCAGCGTTTCAGGCGCAGGGAGGATACACCTAGGCCCGGTGCGCCTGGTGCTCCTGGTCAGGGTCCACGCCCTGTTGGAGCTGGAGCGCCAGCTGCTCGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

133

Amino Acids

14.88

Weight (kDa)

10.9

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	24, 64, 78
AcoI	YGGCCR	3 cut(s)	25, 40, 46
AcvI	CACGTG	1 cut(s)	52
AdeI	CACNNNGTG	1 cut(s)	250
AfiI	CCNNNNNNNGG	2 cut(s)	329, 353
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	337, 346
AleI	CACNNNNGTG	1 cut(s)	42
AluBI	AGCT	4 cut(s)	104, 199, 374, 386
AluI	AGCT	4 cut(s)	104, 199, 374, 386
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	4 cut(s)	25, 40, 46, 326
ApeKI	GCWGC	4 cut(s)	66, 87, 143, 386
AspA2I	CCTAGG	1 cut(s)	323
AspLEI	GCGC	4 cut(s)	233, 309, 337, 382
AspS9I	GGNCC	2 cut(s)	327, 356
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	346
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	53, 74, 130, 373
BccI	CCATC	2 cut(s)	173, 242
BceAI	ACGGC	3 cut(s)	27, 37, 55
BciT130I	CCWGG	2 cut(s)	339, 348
BciVI	GTATCC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	5 cut(s)	25, 67, 88, 144, 387
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	5 cut(s)	26, 68, 89, 145, 388
Bme1390I	CCNGG	3 cut(s)	330, 339, 348
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	327, 356
BmiI	GGNNCC	2 cut(s)	281, 357
BmrFI	CCNGG	3 cut(s)	330, 339, 348
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	2 cut(s)	195, 294
BpuMI	CCSGG	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	43, 93, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 353
BseBI	CCWGG	2 cut(s)	339, 348
BseDI	CCNNGG	3 cut(s)	43, 93, 323
BseGI	GGATG	3 cut(s)	60, 160, 234
BseLI	CCNNNNNNNGG	2 cut(s)	329, 353
BseMII	CTCAG	1 cut(s)	308
BseX3I	CGGCCG	2 cut(s)	25, 40
BseXI	GCAGC	4 cut(s)	53, 74, 130, 373
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	2 cut(s)	28, 43
BshFI	GGCC	4 cut(s)	27, 42, 48, 328
BsiEI	CGRYCG	2 cut(s)	28, 43
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	28, 330
BslI	CCNNNNNNNGG	2 cut(s)	329, 353
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	4 cut(s)	27, 42, 48, 328
Bso31I	GGTCTC	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	291, 346
Bsp68I	TCGCGA	1 cut(s)	267
BspACI	CCGC	3 cut(s)	24, 64, 78
BspANI	GGCC	4 cut(s)	27, 42, 48, 328
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	281, 357
BspMAI	CTGCAG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	43, 93, 323
BssT1I	CCWWGG	2 cut(s)	93, 323
Bst2UI	CCWGG	2 cut(s)	339, 348
Bst4CI	ACNGT	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	141, 384
BstDEI	CTNAG	3 cut(s)	195, 207, 294
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	60, 160, 234
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	4 cut(s)	233, 309, 337, 382
BstMAI	GTCTC	1 cut(s)	267
BstMCI	CGRYCG	2 cut(s)	28, 43
BstMWI	GCNNNNNNNGC	8 cut(s)	75, 84, 228, 295, 304, 334, 341, 386
BstNI	CCWGG	2 cut(s)	339, 348
BstSCI	CCNGG	3 cut(s)	328, 337, 346
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	53, 74, 130, 373
BstZI	CGGCCG	2 cut(s)	25, 40
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	27, 42, 48, 328
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	60, 160, 234
BtuMI	TCGCGA	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	141, 384
CfoI	GCGC	4 cut(s)	233, 309, 337, 382
Cfr13I	GGNCC	2 cut(s)	327, 356
CviAII	CATG	1 cut(s)	396
DdeI	CTNAG	3 cut(s)	195, 207, 294
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	3 cut(s)	25, 40, 46
EagI	CGGCCG	2 cut(s)	25, 40
EclXI	CGGCCG	2 cut(s)	25, 40
Eco130I	CCWWGG	2 cut(s)	93, 323
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	356
Eco52I	CGGCCG	2 cut(s)	25, 40
Eco72I	CACGTG	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	337, 346
EcoT14I	CCWWGG	2 cut(s)	93, 323
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	2 cut(s)	93, 323
FaeI	CATG	1 cut(s)	399
FaiI	YATR	2 cut(s)	204, 397
FatI	CATG	1 cut(s)	395
Fnu4HI	GCNGC	5 cut(s)	25, 67, 88, 144, 387
FokI	GGATG	3 cut(s)	47, 167, 221
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	5 cut(s)	25, 67, 88, 144, 387
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	4 cut(s)	232, 308, 336, 381
GluI	GCNGC	5 cut(s)	25, 67, 88, 144, 387
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	4 cut(s)	27, 42, 48, 328
HapII	CCGG	2 cut(s)	28, 330
HhaI	GCGC	4 cut(s)	233, 309, 337, 382
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	4 cut(s)	231, 307, 335, 380
HinP1I	GCGC	4 cut(s)	231, 307, 335, 380
HpaII	CCGG	2 cut(s)	28, 330
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	175, 359
Hpy188III	TCNNGA	4 cut(s)	10, 109, 161, 266
Hpy8I	GTNNAC	2 cut(s)	175, 359
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	2 cut(s)	51, 246
HpyCH4V	TGCA	2 cut(s)	146, 214
HpyF10VI	GCNNNNNNNGC	8 cut(s)	75, 84, 228, 295, 304, 334, 341, 386
HpyF3I	CTNAG	3 cut(s)	195, 207, 294
HpySE526I	ACGT	2 cut(s)	51, 246
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	4 cut(s)	231, 307, 335, 380
LmnI	GCTCC	4 cut(s)	74, 349, 371, 377
Lsp1109I	GCAGC	4 cut(s)	53, 74, 130, 373
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	51, 246
MaeIII	GTNAC	1 cut(s)	182
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	2 cut(s)	291, 346
MlsI	TGGCCA	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	96, 349
MnlI	CCTC	7 cut(s)	105, 117, 157, 246, 270, 303, 307
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	66, 386
MspI	CCGG	2 cut(s)	28, 330
MspR9I	CCNGG	3 cut(s)	330, 339, 348
MvaI	CCWGG	2 cut(s)	339, 348
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	8 cut(s)	75, 84, 228, 295, 304, 334, 341, 386
NciI	CCSGG	1 cut(s)	330
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	2 cut(s)	281, 357
NruI	TCGCGA	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	42
PkrI	GCNGC	5 cut(s)	26, 68, 89, 145, 388
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	337, 346
PspCI	CACGTG	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	337, 346
PspN4I	GGNNCC	2 cut(s)	281, 357
PspPI	GGNCC	2 cut(s)	327, 356
PstI	CTGCAG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	386
RruI	TCGCGA	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	42
SatI	GCNGC	5 cut(s)	25, 67, 88, 144, 387
Sau96I	GGNCC	2 cut(s)	327, 356
ScrFI	CCNGG	3 cut(s)	330, 339, 348
SduI	GDGCHC	2 cut(s)	291, 346
SetI	ASST	8 cut(s)	54, 106, 116, 201, 249, 325, 376, 388
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	42
SsiI	CCGC	3 cut(s)	24, 64, 78
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	328, 337, 346
StyI	CCWWGG	2 cut(s)	93, 323
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	2 cut(s)	54, 249
TaqII	GACCGA	1 cut(s)	249
TauI	GCSGC	1 cut(s)	27
TseI	GCWGC	4 cut(s)	66, 87, 143, 386
TspDTI	ATGAA	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	356
XmaJI	CCTAGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.