Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

34616504 .. 34617266

Gene Structure 763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG321000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTGCAGGAGGCTTGTGTCTATGAGAGTTACACTGCCGAAGCTGTATTCTAAGATGCAGTACTGTGTGTCCTGTGCTATTCACTCTAACGTTGTGAGGGTGAGGTCTCGCACCAACAAGAGGAACCGTGAGCCACCACAGAGATTCATCAGACGCAGGGATGATGCCCAAAGGCCTGGAGCACCTGGTCAGGGAACCCGACCTGCTGGAGCTGGTGTTCCTGCTCGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

77

Amino Acids

8.76

Weight (kDa)

11.83

Isoelectric Point (pI)

73.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	6 - 54	1.5e-17	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AclI	AACGTT	1 cut(s)	90
AfaI	GTAC	2 cut(s)	62, 229
AfiI	CCNNNNNNNGG	2 cut(s)	120, 191
AjnI	CCWGG	2 cut(s)	175, 184
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	2 cut(s)	43, 212
AluI	AGCT	2 cut(s)	43, 212
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	177, 186
BcoDI	GTCTC	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	211
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	177, 186
BmiI	GGNNCC	2 cut(s)	125, 196
BmrFI	CCNGG	2 cut(s)	177, 186
BmsI	GCATC	2 cut(s)	45, 154
BpmI	CTGGAG	2 cut(s)	198, 228
BsaI	GGTCTC	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 191
BseBI	CCWGG	2 cut(s)	177, 186
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	120, 191
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	120, 191
BsmAI	GTCTC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	125, 196
BspMI	ACCTGC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	177, 186
Bst4CI	ACNGT	2 cut(s)	65, 128
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	111
BstNI	CCWGG	2 cut(s)	177, 186
BstSCI	CCNGG	2 cut(s)	175, 184
BstXI	CCANNNNNNTGG	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	211
CseI	GACGC	1 cut(s)	162
CsiI	ACCWGGT	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	61, 228
CviJI	RGCY	5 cut(s)	13, 43, 133, 175, 212
CviKI_1	RGCY	5 cut(s)	13, 43, 133, 175, 212
CviQI	GTAC	2 cut(s)	61, 228
DdeI	CTNAG	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	175, 184
FaiI	YATR	1 cut(s)	23
FokI	GGATG	1 cut(s)	173
GsuI	CTGGAG	2 cut(s)	198, 228
HaeIII	GGCC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	162
HinfI	GANTC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	65, 128
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	6, 58
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	179, 209
LweI	GCATC	2 cut(s)	45, 154
MabI	ACCWGGT	1 cut(s)	184
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	184
MnlI	CCTC	4 cut(s)	3, 90, 96, 114
MspR9I	CCNGG	2 cut(s)	177, 186
MvaI	CCWGG	2 cut(s)	177, 186
NlaIV	GGNNCC	2 cut(s)	125, 196
PceI	AGGCCT	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	144
Psp1406I	AACGTT	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	175, 184
PspGI	CCWGG	2 cut(s)	175, 184
PspN4I	GGNNCC	2 cut(s)	125, 196
RsaI	GTAC	2 cut(s)	62, 229
RsaNI	GTAC	2 cut(s)	61, 228
ScaI	AGTACT	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	177, 186
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	6 cut(s)	45, 93, 107, 187, 205, 214
SexAI	ACCWGGT	1 cut(s)	184
SfaNI	GCATC	2 cut(s)	45, 154
SseBI	AGGCCT	1 cut(s)	175
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	175, 184
TaaI	ACNGT	2 cut(s)	65, 128
TaiI	ACGT	1 cut(s)	93
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.