Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

4245629 .. 4248061

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1053100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGACTTTCAAGAGAAGAAACGGCGGCCGGAACAAGCACGGCCGCGGCCACGTGAAGTTCATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAAGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAGCAGGCTGCAGTTAGGGATGTTCAGGAGGCTTGTGTTTACGATGGTTACACCCTTCCTAAGCTGTATGCTAAGATGCAATACTGCGTTTCTTGCGCCATCCACTCCCACGTTGTGAGGGTTCGGTCTCGCGAGAATAGGAGGAACCGTGAGCCCCCTCAGCGTTTCAGGCGCCGGGAGGATACACCTAGGCCCGGTGCGCCTGGTGCTCCTGGTCAGGGTCCACGCCCTGTTGGAGCTGGAGCGCCAGCTGCTCGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

10.9

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 106	3.4e-55	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccII	CGCG	2 cut(s)	45, 267
AciI	CCGC	5 cut(s)	24, 43, 45, 64, 78
AcoI	YGGCCR	3 cut(s)	25, 40, 46
AcvI	CACGTG	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	250
AfiI	CCNNNNNNNGG	2 cut(s)	329, 353
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	337, 346
AluBI	AGCT	4 cut(s)	104, 199, 374, 386
AluI	AGCT	4 cut(s)	104, 199, 374, 386
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	4 cut(s)	25, 40, 46, 326
ApeKI	GCWGC	4 cut(s)	66, 87, 143, 386
AspA2I	CCTAGG	1 cut(s)	323
AspLEI	GCGC	4 cut(s)	233, 309, 337, 382
AspS9I	GGNCC	2 cut(s)	327, 356
AsuC2I	CCSGG	2 cut(s)	311, 330
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	346
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	53, 74, 130, 373
BccI	CCATC	2 cut(s)	173, 242
BceAI	ACGGC	2 cut(s)	37, 55
BciT130I	CCWGG	2 cut(s)	339, 348
BciVI	GTATCC	1 cut(s)	310
BcnI	CCSGG	2 cut(s)	311, 330
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	2 cut(s)	310, 383
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	7 cut(s)	26, 44, 47, 68, 89, 145, 388
Bme1390I	CCNGG	4 cut(s)	311, 330, 339, 348
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	327, 356
BmiI	GGNNCC	3 cut(s)	281, 308, 357
BmrFI	CCNGG	4 cut(s)	311, 330, 339, 348
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	2 cut(s)	195, 294
BpuMI	CCSGG	2 cut(s)	311, 330
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	43, 93, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 353
BseBI	CCWGG	2 cut(s)	339, 348
BseDI	CCNNGG	3 cut(s)	43, 93, 323
BseGI	GGATG	3 cut(s)	60, 160, 234
BseLI	CCNNNNNNNGG	2 cut(s)	329, 353
BseMII	CTCAG	1 cut(s)	308
BseX3I	CGGCCG	2 cut(s)	25, 40
BseXI	GCAGC	4 cut(s)	53, 74, 130, 373
Bsh1236I	CGCG	2 cut(s)	45, 267
Bsh1285I	CGRYCG	2 cut(s)	28, 43
BshFI	GGCC	4 cut(s)	27, 42, 48, 328
BshNI	GGYRCC	1 cut(s)	306
BsiEI	CGRYCG	2 cut(s)	28, 43
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	3 cut(s)	28, 310, 330
BslI	CCNNNNNNNGG	2 cut(s)	329, 353
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	4 cut(s)	27, 42, 48, 328
Bso31I	GGTCTC	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	291, 346
Bsp68I	TCGCGA	1 cut(s)	267
BspACI	CCGC	5 cut(s)	24, 43, 45, 64, 78
BspANI	GGCC	4 cut(s)	27, 42, 48, 328
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	2 cut(s)	45, 267
BspLI	GGNNCC	3 cut(s)	281, 308, 357
BspMAI	CTGCAG	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	43, 93, 323
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	93, 323
Bst2UI	CCWGG	2 cut(s)	339, 348
Bst4CI	ACNGT	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	141, 384
BstDEI	CTNAG	3 cut(s)	195, 207, 294
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	60, 160, 234
BstFNI	CGCG	2 cut(s)	45, 267
BstH2I	RGCGCY	2 cut(s)	310, 383
BstHHI	GCGC	4 cut(s)	233, 309, 337, 382
BstMAI	GTCTC	1 cut(s)	267
BstMCI	CGRYCG	2 cut(s)	28, 43
BstMWI	GCNNNNNNNGC	8 cut(s)	75, 84, 228, 295, 304, 334, 341, 386
BstNI	CCWGG	2 cut(s)	339, 348
BstSCI	CCNGG	4 cut(s)	309, 328, 337, 346
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	2 cut(s)	45, 267
BstV1I	GCAGC	4 cut(s)	53, 74, 130, 373
BstZI	CGGCCG	2 cut(s)	25, 40
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	27, 42, 48, 328
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	60, 160, 234
BtuMI	TCGCGA	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	141, 384
CfoI	GCGC	4 cut(s)	233, 309, 337, 382
Cfr13I	GGNCC	2 cut(s)	327, 356
Cfr42I	CCGCGG	1 cut(s)	46
CviAII	CATG	1 cut(s)	396
DdeI	CTNAG	3 cut(s)	195, 207, 294
DinI	GGCGCC	1 cut(s)	308
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	3 cut(s)	25, 40, 46
EagI	CGGCCG	2 cut(s)	25, 40
EclXI	CGGCCG	2 cut(s)	25, 40
Eco130I	CCWWGG	2 cut(s)	93, 323
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	356
Eco52I	CGGCCG	2 cut(s)	25, 40
Eco72I	CACGTG	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	337, 346
EcoT14I	CCWWGG	2 cut(s)	93, 323
EcoT38I	GRGCYC	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
ErhI	CCWWGG	2 cut(s)	93, 323
FaeI	CATG	1 cut(s)	399
FaiI	YATR	2 cut(s)	204, 397
FatI	CATG	1 cut(s)	395
Fnu4HI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
FokI	GGATG	3 cut(s)	47, 167, 221
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	4 cut(s)	232, 308, 336, 381
GluI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	2 cut(s)	310, 383
HaeIII	GGCC	4 cut(s)	27, 42, 48, 328
HapII	CCGG	3 cut(s)	28, 310, 330
HhaI	GCGC	4 cut(s)	233, 309, 337, 382
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	4 cut(s)	231, 307, 335, 380
HinP1I	GCGC	4 cut(s)	231, 307, 335, 380
HpaII	CCGG	3 cut(s)	28, 310, 330
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	175, 359
Hpy188III	TCNNGA	4 cut(s)	10, 109, 161, 266
Hpy8I	GTNNAC	2 cut(s)	175, 359
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	2 cut(s)	51, 246
HpyCH4V	TGCA	2 cut(s)	146, 214
HpyF10VI	GCNNNNNNNGC	8 cut(s)	75, 84, 228, 295, 304, 334, 341, 386
HpyF3I	CTNAG	3 cut(s)	195, 207, 294
HpySE526I	ACGT	2 cut(s)	51, 246
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	4 cut(s)	231, 307, 335, 380
KasI	GGCGCC	1 cut(s)	306
KspI	CCGCGG	1 cut(s)	46
LmnI	GCTCC	4 cut(s)	74, 349, 371, 377
Lsp1109I	GCAGC	4 cut(s)	53, 74, 130, 373
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	51, 246
MaeIII	GTNAC	1 cut(s)	182
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	2 cut(s)	291, 346
Mly113I	GGCGCC	1 cut(s)	307
MmeI	TCCRAC	2 cut(s)	96, 349
MnlI	CCTC	7 cut(s)	105, 117, 157, 246, 270, 303, 307
MspA1I	CMGCKG	3 cut(s)	45, 66, 386
MspI	CCGG	3 cut(s)	28, 310, 330
MspR9I	CCNGG	4 cut(s)	311, 330, 339, 348
MvaI	CCWGG	2 cut(s)	339, 348
MvnI	CGCG	2 cut(s)	45, 267
MwoI	GCNNNNNNNGC	8 cut(s)	75, 84, 228, 295, 304, 334, 341, 386
NarI	GGCGCC	1 cut(s)	307
NciI	CCSGG	2 cut(s)	311, 330
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	3 cut(s)	281, 308, 357
NruI	TCGCGA	1 cut(s)	267
PkrI	GCNGC	7 cut(s)	26, 44, 47, 68, 89, 145, 388
PluTI	GGCGCC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	337, 346
PspCI	CACGTG	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	337, 346
PspN4I	GGNNCC	3 cut(s)	281, 308, 357
PspPI	GGNCC	2 cut(s)	327, 356
PstI	CTGCAG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	386
RruI	TCGCGA	1 cut(s)	267
SacII	CCGCGG	1 cut(s)	46
SatI	GCNGC	7 cut(s)	25, 43, 46, 67, 88, 144, 387
Sau96I	GGNCC	2 cut(s)	327, 356
ScrFI	CCNGG	4 cut(s)	311, 330, 339, 348
SduI	GDGCHC	2 cut(s)	291, 346
SetI	ASST	8 cut(s)	54, 106, 116, 201, 249, 325, 376, 388
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	144
SfoI	GGCGCC	1 cut(s)	308
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	356
SsiI	CCGC	5 cut(s)	24, 43, 45, 64, 78
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	4 cut(s)	309, 328, 337, 346
StyI	CCWWGG	2 cut(s)	93, 323
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	2 cut(s)	54, 249
TaqII	GACCGA	1 cut(s)	249
TauI	GCSGC	3 cut(s)	27, 45, 48
TseI	GCWGC	4 cut(s)	66, 87, 143, 386
TspDTI	ATGAA	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	356
XmaJI	CCTAGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.