Rh5BG496500

Belongs to the eukaryotic ribosomal protein eS26 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002764
Physical Location & Seq
Reverse (-)
79096758 .. 79099205
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG496500.1

Sequence Viewer

Length: 363 bp
ATGACTTTCAAGAGAAGAAATGGCGGGCGCAACAAGCACGGCCGTGGCCACACCAAGTTCATCCGCTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAAGCTATCAAGCGGTTTCTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGTCCAGGAGGCTTGTGTTTATGAATCCTACACTCTTCCTAAGCTGTATGCAAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCATGTAGTGAGGGTTCGATCTAGGGAGAAGAGGAGGAGCCGTGAGGCCCCTCAGCGTTTCAGGCGCCGGGTATGTTTGAAGTTTTGTTTGCCATCTAAGTGTCTGCTTTTGTATCTATAA

Protein Analysis

120

Amino Acids

14.15

Weight (kDa)

10.38

Isoelectric Point (pI)

75.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S26e PF01283 1 - 104 6.9e-53 Ribosomal protein S26e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 306
AciI CCGC 4 cut(s) 24, 64, 78, 112
AcoI YGGCCR 2 cut(s) 40, 46
AcyI GRCGYC 1 cut(s) 307
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 2 cut(s) 10, 322
AjnI CCWGG 1 cut(s) 159
AleI CACNNNNGTG 1 cut(s) 42
AluBI AGCT 3 cut(s) 104, 143, 199
AluI AGCT 3 cut(s) 104, 143, 199
AoxI GGCC 3 cut(s) 40, 46, 288
ApeKI GCWGC 3 cut(s) 66, 87, 143
AspLEI GCGC 2 cut(s) 30, 309
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 133
AxyI CCTNAGG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 53, 74, 130
BccI CCATC 1 cut(s) 343
BceAI ACGGC 3 cut(s) 27, 55, 267
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 1 cut(s) 311
BfaI CTAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 310
BisI GCNGC 4 cut(s) 67, 79, 88, 144
BlsI GCNGC 4 cut(s) 68, 80, 89, 145
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 161, 311
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 3 cut(s) 281, 291, 308
BmrFI CCNGG 2 cut(s) 161, 311
BmsI GCATC 1 cut(s) 201
Bpu10I CCTNAGC 2 cut(s) 195, 294
BpuMI CCSGG 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bse21I CCTNAGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 60, 160
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 289, 292
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 3 cut(s) 53, 74, 130
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 3 cut(s) 42, 48, 290
BshNI GGYRCC 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 310
BsnI GGCC 3 cut(s) 42, 48, 290
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 4 cut(s) 24, 64, 78, 112
BspANI GGCC 3 cut(s) 42, 48, 290
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 281, 291, 308
BspT107I GGYRCC 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 260
BssNI GRCGYC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 195, 266
BstACI GRCGYC 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 26, 141
BstDEI CTNAG 4 cut(s) 93, 195, 294, 339
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 60, 160
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 2 cut(s) 30, 309
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 5 cut(s) 34, 75, 84, 87, 304
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 159, 309
BstV1I GCAGC 3 cut(s) 53, 74, 130
BstZI CGGCCG 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 3 cut(s) 42, 48, 290
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 60, 160
Cac8I GCNNGC 2 cut(s) 26, 141
CfoI GCGC 2 cut(s) 30, 309
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 245
CviJI RGCY 8 cut(s) 42, 48, 104, 143, 167, 199, 282, 290
CviKI_1 RGCY 8 cut(s) 42, 48, 104, 143, 167, 199, 282, 290
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 4 cut(s) 93, 195, 294, 339
DinI GGCGCC 1 cut(s) 308
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 40, 46
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 195, 266
EarI CTCTTC 2 cut(s) 195, 266
EclXI CGGCCG 1 cut(s) 40
Eco52I CGGCCG 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 159
EgeI GGCGCC 1 cut(s) 308
EheI GGCGCC 1 cut(s) 308
FaeI CATG 1 cut(s) 248
FaiI YATR 5 cut(s) 177, 204, 246, 316, 361
FatI CATG 1 cut(s) 244
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 67, 79, 88, 144
FokI GGATG 2 cut(s) 47, 167
Fsp4HI GCNGC 4 cut(s) 67, 79, 88, 144
FspBI CTAG 1 cut(s) 264
GlaI GCGC 2 cut(s) 29, 308
GluI GCNGC 4 cut(s) 67, 79, 88, 144
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 3 cut(s) 42, 48, 290
HapII CCGG 1 cut(s) 310
HhaI GCGC 2 cut(s) 30, 309
Hin1I GRCGYC 1 cut(s) 307
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 2 cut(s) 28, 307
HinP1I GCGC 2 cut(s) 28, 307
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 206, 214
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 75, 84, 87, 304
HpyF3I CTNAG 4 cut(s) 93, 195, 294, 339
Hsp92I GRCGYC 1 cut(s) 307
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 2 cut(s) 28, 307
KasI GGCGCC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 2 cut(s) 74, 279
LpnPI CCDG 6 cut(s) 104, 146, 173, 241, 289, 323
Lsp1109I GCAGC 3 cut(s) 53, 74, 130
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 264
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 3 cut(s) 27, 182, 283
MlsI TGGCCA 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 7 cut(s) 117, 157, 246, 267, 270, 280, 303
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MslI CAYNNNNRTG 3 cut(s) 42, 243, 340
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 2 cut(s) 161, 311
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 5 cut(s) 34, 75, 84, 87, 304
NarI GGCGCC 1 cut(s) 307
NciI CCSGG 1 cut(s) 311
NdeII GATC 1 cut(s) 260
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 3 cut(s) 281, 291, 308
OliI CACNNNNGTG 1 cut(s) 42
PfeI GAWTC 1 cut(s) 179
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 4 cut(s) 68, 80, 89, 145
PluTI GGCGCC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 3 cut(s) 281, 291, 308
PspPI GGNCC 1 cut(s) 289
PsrI GAACNNNNNNTAC 2 cut(s) 240, 272
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 3 cut(s) 42, 243, 340
SatI GCNGC 4 cut(s) 67, 79, 88, 144
Sau3AI GATC 1 cut(s) 260
Sau96I GGNCC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 161, 311
SetI ASST 3 cut(s) 106, 145, 201
SfaNI GCATC 1 cut(s) 201
SfoI GGCGCC 1 cut(s) 308
SmiMI CAYNNNNRTG 3 cut(s) 42, 243, 340
SsiI CCGC 4 cut(s) 24, 64, 78, 112
SspDI GGCGCC 1 cut(s) 306
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 159, 309
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 259
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 179
TseI GCWGC 3 cut(s) 66, 87, 143
TspDTI ATGAA 2 cut(s) 49, 192
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.