MD01G1164800.v1.1

Belongs to the eukaryotic ribosomal protein eS26 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0002764
Physical Location & Seq
Forward (+)
26915953 .. 26917753
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1164800.v1.1.491

Sequence Viewer

Length: 390 bp
ATGACTTTCAAGCGCAGAAATGGAGGTCGCAACAAGCACGGCCGCGGACACGTCAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCCATCAAGAGATTCCTGGTGAGGAACATCGTCGAGCAAGCTGCGGTGAGGGATGTTCAGGAAGCCTGTGTCTATGAGCAATACACGTTGCCTAAGCTGTATGCCAAGATGCAGTACTGTGTTTCCTGTGCAATTCACTCCCATGTTGTGAGGGTGCGATCCCGCACCAACAGGAGGAACCGTGAGCCACCACAGCGATATATCAGACGCAGGGATGATGCCCCAAGGCCCGGTCAGCCTGGTCAAGCTCCCCGACCTGCTGGAGCTGGTGTTCCTGCTCGTACTTGA

Protein Analysis

130

Amino Acids

14.82

Weight (kDa)

10.92

Isoelectric Point (pI)

67.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S26e PF01283 1 - 105 1.4e-53 Ribosomal protein S26e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AccII CGCG 1 cut(s) 45
AciI CCGC 6 cut(s) 43, 45, 64, 78, 146, 265
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 40
AfaI GTAC 2 cut(s) 218, 385
AfiI CCNNNNNNNGG 2 cut(s) 276, 332
AflIII ACRYGT 2 cut(s) 49, 186
AgsI TTSAA 1 cut(s) 10
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 2 cut(s) 117, 340
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 4 cut(s) 143, 199, 350, 368
AluI AGCT 4 cut(s) 143, 199, 350, 368
AlwI GGATC 1 cut(s) 255
AoxI GGCC 3 cut(s) 40, 102, 329
ApeKI GCWGC 3 cut(s) 66, 87, 143
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 133, 160
BbvI GCAGC 3 cut(s) 53, 74, 130
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 2 cut(s) 119, 342
BcnI CCSGG 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 5 cut(s) 43, 67, 79, 88, 144
BlsI GCNGC 5 cut(s) 44, 68, 80, 89, 145
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 3 cut(s) 119, 333, 342
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 3 cut(s) 119, 333, 342
BmsI GCATC 2 cut(s) 201, 310
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 3 cut(s) 43, 93, 326
BsaXI ACNNNNNCTCC 4 cut(s) 268, 298, 357, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 332
BseBI CCWGG 2 cut(s) 119, 342
BseDI CCNNGG 3 cut(s) 43, 93, 326
BseGI GGATG 3 cut(s) 60, 160, 322
BseLI CCNNNNNNNGG 2 cut(s) 276, 332
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 3 cut(s) 53, 74, 130
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 3 cut(s) 42, 104, 331
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 333
BslI CCNNNNNNNGG 2 cut(s) 276, 332
BsnI GGCC 3 cut(s) 42, 104, 331
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 6 cut(s) 43, 45, 64, 78, 146, 265
BspANI GGCC 3 cut(s) 42, 104, 331
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 281
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 255
BssECI CCNNGG 3 cut(s) 43, 93, 326
BssMI GATC 1 cut(s) 260
BssT1I CCWWGG 2 cut(s) 93, 326
Bst2UI CCWGG 2 cut(s) 119, 342
Bst4CI ACNGT 2 cut(s) 221, 284
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 3 cut(s) 60, 160, 322
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 5 cut(s) 75, 84, 87, 295, 337
BstNI CCWGG 2 cut(s) 119, 342
BstSCI CCNGG 3 cut(s) 117, 331, 340
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 53, 74, 130
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 3 cut(s) 42, 104, 331
BtgI CCRYGG 1 cut(s) 43
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 3 cut(s) 60, 160, 322
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 330
Cfr42I CCGCGG 1 cut(s) 46
CseI GACGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 217, 384
CviAII CATG 1 cut(s) 245
CviQI GTAC 2 cut(s) 217, 384
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 93, 326
Eco52I CGGCCG 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 117, 340
EcoT14I CCWWGG 2 cut(s) 93, 326
ErhI CCWWGG 2 cut(s) 93, 326
FaeI CATG 1 cut(s) 248
FaiI YATR 4 cut(s) 177, 204, 246, 303
FatI CATG 1 cut(s) 244
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 5 cut(s) 43, 67, 79, 88, 144
FokI GGATG 3 cut(s) 47, 167, 329
Fsp4HI GCNGC 5 cut(s) 43, 67, 79, 88, 144
GlaI GCGC 1 cut(s) 14
GluI GCNGC 5 cut(s) 43, 67, 79, 88, 144
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 3 cut(s) 42, 104, 331
HapII CCGG 1 cut(s) 333
HgaI GACGC 1 cut(s) 318
HhaI GCGC 1 cut(s) 15
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 333
HphI GGTGA 2 cut(s) 133, 160
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 2 cut(s) 109, 161
Hpy99I CGWCG 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 221, 284
HpyCH4IV ACGT 2 cut(s) 51, 188
HpyCH4V TGCA 2 cut(s) 214, 233
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 84, 87, 295, 337
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 2 cut(s) 51, 188
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 1 cut(s) 13
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 3 cut(s) 74, 355, 365
Lsp1109I GCAGC 3 cut(s) 53, 74, 130
LweI GCATC 2 cut(s) 201, 310
MaeII ACGT 2 cut(s) 51, 188
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MluCI AATT 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 17, 117, 144, 246, 270
MslI CAYNNNNRTG 1 cut(s) 243
MspA1I CMGCKG 2 cut(s) 45, 66
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 3 cut(s) 119, 333, 342
MvaI CCWGG 2 cut(s) 119, 342
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 5 cut(s) 75, 84, 87, 295, 337
NciI CCSGG 1 cut(s) 333
NdeII GATC 1 cut(s) 260
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 5 cut(s) 44, 68, 80, 89, 145
Psp6I CCWGG 2 cut(s) 117, 340
PspGI CCWGG 2 cut(s) 117, 340
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 330
RsaI GTAC 2 cut(s) 218, 385
RsaNI GTAC 2 cut(s) 217, 384
RseI CAYNNNNRTG 1 cut(s) 243
SacII CCGCGG 1 cut(s) 46
SatI GCNGC 5 cut(s) 43, 67, 79, 88, 144
Sau3AI GATC 1 cut(s) 260
Sau96I GGNCC 1 cut(s) 330
ScaI AGTACT 1 cut(s) 218
ScrFI CCNGG 3 cut(s) 119, 333, 342
SetI ASST 8 cut(s) 28, 54, 145, 191, 201, 352, 361, 370
SfaNI GCATC 2 cut(s) 201, 310
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 1 cut(s) 234
SsiI CCGC 6 cut(s) 43, 45, 64, 78, 146, 265
StyD4I CCNGG 3 cut(s) 117, 331, 340
StyI CCWWGG 2 cut(s) 93, 326
TaaI ACNGT 2 cut(s) 221, 284
TaiI ACGT 2 cut(s) 54, 191
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 216
TauI GCSGC 2 cut(s) 45, 81
TfiI GAWTC 1 cut(s) 114
TseI GCWGC 3 cut(s) 66, 87, 143
TspDTI ATGAA 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.