Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002821

Physical Location & Seq

Genomic Coordinates Forward (+)

17121327 .. 17123222

Gene Structure 1896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGATGGCGGCTCTAACATCTTCTTCTTCTGCTATTACTCTCCTCAACAAACCTTTCTTACCTAACCGCTCTTCCTTCTTCTCCTCTGATTCACAATCTCCTCTTCTCCGATTCTCTGCTTCTACCTCTGTTCGTTCTCGTTTTCCATCCGCAGCCATAAGCGCCGTTGCTCCCAAATCGGACATAAATAAAAATGAAACTCCAAAGATCGAAATAGAGGAAACTCAAGTGTTCGCGTGTCCTGTTTGCTACGAACCACTTATGAGGAAAGGACCTTCAGGTATCAACCTACAAGCAATCTACAGGTCTGGATTCAAGTGTGGACAATGTAACAAGACATATTCTAGCAAAGATGAATACTTGGATCTTACTGTCACTGCTGATTTGGATGATTATAATGAAGTCAAACCCATTACTACCGAGCTCTTTCGGAGTCCATTAGTATCATTTTTGTATGAAAGAGGTTGGCGTCAAGCCTTTAAGCGAAGCGGGTTTCCCGGTCCAGATGAAGAGTTTAGAATGGCTGAGGAATACTTCAAAGAAGCAGAAGGTGGGCTTCTTGTGGATGTTAGTTGCGGAAGCGGTTTGTTTTCCCGCAAATTTGCGCAGTCTGGCAAATACTCTGGCGTGATTGCTTTAGACTACTCTGAAAACATGCTTCGTCAGTGCAAAGAATTCATTAAAAATGATAATACTTTCGACAACTCAACTAATATAGCTGTTGTGAGAGCAGACGTTTCTCGCCTCCCTTTCCCTTCGGGTTCTGTTGACGCGGTTCATGCTGGTGCAGCCTTGCACTGTTGGCCTTCTCCTACAAATGCTATTGCTGAGATCTGTCGTGTTCTAAGAAGCGGAGGTGTGTTTGTCGGGACAACGTTTCTCAGATACAGTCCTTCGACTCCTTGGATTATTCGTCCTTTCCAATCGAGAATTCTGCAGAGCTACAATTACTTGATGCAGGATGAGATCAAGGATGTGTGCACATCATGTGGTCTCACAGATTATGAAGATTATATTCAGGATTCTTTTATCATGTTTACTGCTCGCAAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

352

Amino Acids

39.23

Weight (kDa)

6.23

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	181 - 294	6.1e-12	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	182 - 328	2.3e-08	Methyltransferase domain
Methyltransf_31	PF13847	188 - 294	3.7e-14	Methyltransferase domain
Methyltransf_11	PF08241	189 - 290	2e-22	Methyltransferase domain
Methyltransf_25	PF13649	189 - 287	5.2e-19	Methyltransferase domain
Methyltransf_12	PF08242	189 - 289	5.9e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41040
fragaria_vesca	FvH4_1g01890 FvH4_1g01891 FvH4_1g01891 FvH4_1g01891
malus_domestica	MD02G1016900.v1.1 MD15G1161300.v1.1 MD15G1161400.v1.1
prunus_persica	Prupe.7G256500_v2.0.a1
pyrus_communis	pycom02g01520 pycom15g14510
rosa_chinensis	RchiOBHm_Chr2g0086891 RchiOBHm_Chr2g0086901
rosa_laevigata	RLG00000015811 RLG00000015812 RLG00000015813 RLG00000015814
rosa_multiflora	Rmu_sc0009060.1_g000008 Rmu_sc0009060.1_g000009 Rmu_sc0009188.1_g000001 Rmu_sc0009188.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154040 Rroxscaffold_2G00154050
rosa_rugosa	Rorug01G0470400 Rorug01G0470500
rosa_samantha	Rh2AG023200 Rh2AG023300 Rh2BG023700 Rh2BG023900 Rh2BG024000 Rh2CG024000 Rh2CG024100 Rh2CG024200 Rh2DG023600 Rh2DG024000 Rh2DG024100
rosa_wichuraiana	Rw2G001820 Rw2G001830 Rw2G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
Acc16I	TGCGCA	1 cut(s)	609
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	2 cut(s)	239, 776
AciI	CCGC	9 cut(s)	11, 70, 153, 492, 579, 585, 598, 776, 855
AclI	AACGTT	1 cut(s)	878
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	602, 677, 933
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	319, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	918, 950
AluBI	AGCT	3 cut(s)	427, 722, 945
AluI	AGCT	3 cut(s)	427, 722, 945
Alw21I	GWGCWC	2 cut(s)	429, 986
Alw26I	GTCTC	1 cut(s)	1001
Alw44I	GTGCAC	1 cut(s)	982
AlwI	GGATC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	806
ApaLI	GTGCAC	1 cut(s)	982
ApeKI	GCWGC	2 cut(s)	155, 791
ApoI	RAATTY	3 cut(s)	602, 677, 933
AspLEI	GCGC	2 cut(s)	167, 610
AspS9I	GGNCC	2 cut(s)	275, 503
AsuC2I	CCSGG	1 cut(s)	501
AvaII	GGWCC	2 cut(s)	275, 503
BaeGI	GKGCMC	1 cut(s)	986
BanII	GRGCYC	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	429, 986
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	167, 803
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	919, 953
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	1001
BfaI	CTAG	2 cut(s)	348, 1057
BfmI	CTRYAG	2 cut(s)	304, 938
BfoI	RGCGCY	1 cut(s)	168
BglII	AGATCT	1 cut(s)	834
BisI	GCNGC	3 cut(s)	12, 156, 792
BlsI	GCNGC	3 cut(s)	13, 157, 793
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	2 cut(s)	275, 503
BmgT120I	GGNCC	2 cut(s)	275, 503
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	948
Bpu10I	CCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	1001
BsaJI	CCNNGG	1 cut(s)	905
BseDI	CCNNGG	1 cut(s)	905
BseGI	GGATG	5 cut(s)	149, 397, 574, 970, 982
BseMII	CTCAG	3 cut(s)	519, 822, 898
BseRI	GAGGAG	3 cut(s)	35, 76, 93
BseSI	GKGCMC	1 cut(s)	986
BseXI	GCAGC	2 cut(s)	167, 803
BsgI	GTGCAG	1 cut(s)	810
Bsh1236I	CGCG	2 cut(s)	239, 776
BshFI	GGCC	1 cut(s)	808
BsiHKAI	GWGCWC	2 cut(s)	429, 986
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	886
BsmAI	GTCTC	1 cut(s)	1001
BsmFI	GGGAC	1 cut(s)	886
BsnI	GGCC	1 cut(s)	808
Bso31I	GGTCTC	1 cut(s)	1001
Bsp1286I	GDGCHC	2 cut(s)	429, 986
Bsp143I	GATC	4 cut(s)	210, 367, 834, 969
BspACI	CCGC	9 cut(s)	11, 70, 153, 492, 579, 585, 598, 776, 855
BspANI	GGCC	1 cut(s)	808
BspCNI	CTCAG	3 cut(s)	520, 823, 897
BspFNI	CGCG	2 cut(s)	239, 776
BspMAI	CTGCAG	1 cut(s)	942
BspPI	GGATC	1 cut(s)	375
BspQI	GCTCTTC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	1001
BsrBI	CCGCTC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	905
BssMI	GATC	4 cut(s)	210, 367, 834, 969
BssNI	GRCGYC	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	905
Bst4CI	ACNGT	3 cut(s)	376, 803, 893
Bst6I	CTCTTC	3 cut(s)	79, 111, 507
BstACI	GRCGYC	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	1048, 1052
BstDEI	CTNAG	4 cut(s)	528, 831, 848, 884
BstF5I	GGATG	5 cut(s)	149, 397, 574, 970, 982
BstFNI	CGCG	2 cut(s)	239, 776
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 610
BstKTI	GATC	4 cut(s)	213, 370, 837, 972
BstMAI	GTCTC	1 cut(s)	1001
BstMBI	GATC	4 cut(s)	210, 367, 834, 969
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 164, 782, 791, 805
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	2 cut(s)	304, 938
BstSLI	GKGCMC	1 cut(s)	986
BstUI	CGCG	2 cut(s)	239, 776
BstV1I	GCAGC	2 cut(s)	167, 803
BstX2I	RGATCY	2 cut(s)	367, 834
BstYI	RGATCY	2 cut(s)	367, 834
BsuRI	GGCC	1 cut(s)	808
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	5 cut(s)	149, 397, 574, 970, 982
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	378, 674, 799
Cac8I	GCNNGC	2 cut(s)	1048, 1052
CfoI	GCGC	2 cut(s)	167, 610
Cfr13I	GGNCC	2 cut(s)	275, 503
CseI	GACGC	2 cut(s)	461, 782
CviAII	CATG	4 cut(s)	658, 782, 990, 1036
DdeI	CTNAG	4 cut(s)	528, 831, 848, 884
DpnI	GATC	4 cut(s)	212, 369, 836, 971
DpnII	GATC	4 cut(s)	210, 367, 834, 969
Eam1104I	CTCTTC	3 cut(s)	79, 111, 507
EarI	CTCTTC	3 cut(s)	79, 111, 507
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	905
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	1001
Eco47I	GGWCC	2 cut(s)	275, 503
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	427
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRI	GAATTC	2 cut(s)	677, 933
EcoT14I	CCWWGG	1 cut(s)	905
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	905
FaeI	CATG	4 cut(s)	661, 785, 993, 1039
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	4 cut(s)	657, 781, 989, 1035
FauI	CCCGC	2 cut(s)	485, 605
Fnu4HI	GCNGC	3 cut(s)	12, 156, 792
FokI	GGATG	5 cut(s)	136, 404, 581, 977, 989
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	3 cut(s)	12, 156, 792
FspBI	CTAG	2 cut(s)	348, 1057
FspI	TGCGCA	1 cut(s)	609
GlaI	GCGC	2 cut(s)	166, 609
GluI	GCNGC	3 cut(s)	12, 156, 792
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	808
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	2 cut(s)	461, 782
HhaI	GCGC	2 cut(s)	167, 610
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	4 cut(s)	661, 785, 993, 1039
Hin6I	GCGC	2 cut(s)	165, 608
HinP1I	GCGC	2 cut(s)	165, 608
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	6 cut(s)	92, 114, 315, 436, 901, 1025
HpaII	CCGG	1 cut(s)	501
Hpy166II	GTNNAC	4 cut(s)	326, 772, 984, 1041
Hpy188I	TCNGA	6 cut(s)	91, 113, 184, 435, 652, 887
Hpy188III	TCNNGA	5 cut(s)	312, 506, 871, 930, 1022
Hpy8I	GTNNAC	4 cut(s)	326, 772, 984, 1041
HpyAV	CCTTC	6 cut(s)	88, 288, 545, 768, 819, 906
HpyCH4III	ACNGT	3 cut(s)	376, 803, 893
HpyCH4IV	ACGT	2 cut(s)	738, 878
HpyCH4V	TGCA	6 cut(s)	672, 791, 799, 940, 961, 984
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 164, 782, 791, 805
HpyF3I	CTNAG	4 cut(s)	528, 831, 848, 884
HpySE526I	ACGT	2 cut(s)	738, 878
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	4 cut(s)	661, 785, 993, 1039
HspAI	GCGC	2 cut(s)	165, 608
Kzo9I	GATC	4 cut(s)	210, 367, 834, 969
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	2 cut(s)	167, 803
LweI	GCATC	1 cut(s)	948
MaeI	CTAG	2 cut(s)	348, 1057
MaeII	ACGT	2 cut(s)	738, 878
MaeIII	GTNAC	2 cut(s)	332, 376
MalI	GATC	4 cut(s)	212, 369, 836, 971
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	4 cut(s)	210, 367, 834, 969
MboII	GAAGA	8 cut(s)	15, 18, 21, 66, 73, 98, 524, 1022
MflI	RGATCY	2 cut(s)	367, 834
MhlI	GDGCHC	2 cut(s)	429, 986
MluCI	AATT	4 cut(s)	602, 677, 933, 949
MlyI	GAGTC	2 cut(s)	445, 895
MseI	TTAA	2 cut(s)	483, 684
MslI	CAYNNNNRTG	1 cut(s)	786
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	501
MvnI	CGCG	2 cut(s)	239, 776
MwoI	GCNNNNNNNGC	5 cut(s)	11, 164, 782, 791, 805
NciI	CCSGG	1 cut(s)	501
NdeII	GATC	4 cut(s)	210, 367, 834, 969
NlaIII	CATG	4 cut(s)	661, 785, 993, 1039
NmuCI	GTSAC	1 cut(s)	376
NsbI	TGCGCA	1 cut(s)	609
NspI	RCATGY	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	79
PfeI	GAWTC	4 cut(s)	92, 114, 315, 1025
PkrI	GCNGC	3 cut(s)	13, 157, 793
PleI	GAGTC	2 cut(s)	444, 895
PpsI	GAGTC	2 cut(s)	444, 895
PpuMI	RGGWCCY	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	429
Psp1406I	AACGTT	1 cut(s)	878
Psp5II	RGGWCCY	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	275, 503
PspPPI	RGGWCCY	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	942
PsuI	RGATCY	2 cut(s)	367, 834
RseI	CAYNNNNRTG	1 cut(s)	786
SacI	GAGCTC	1 cut(s)	429
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	483, 684
SatI	GCNGC	3 cut(s)	12, 156, 792
Sau3AI	GATC	4 cut(s)	210, 367, 834, 969
Sau96I	GGNCC	2 cut(s)	275, 503
SchI	GAGTC	2 cut(s)	445, 895
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	429, 986
SfaNI	GCATC	1 cut(s)	948
SfcI	CTRYAG	2 cut(s)	304, 938
SinI	GGWCC	2 cut(s)	275, 503
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	602, 677, 933, 949
SsiI	CCGC	9 cut(s)	11, 70, 153, 492, 579, 585, 598, 776, 855
SspMI	CTAG	2 cut(s)	348, 1057
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	905
TaaI	ACNGT	3 cut(s)	376, 803, 893
TaiI	ACGT	2 cut(s)	741, 881
TaqI	TCGA	4 cut(s)	213, 702, 899, 929
TasI	AATT	4 cut(s)	602, 677, 933, 949
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	4 cut(s)	92, 114, 315, 1025
Tru1I	TTAA	2 cut(s)	483, 684
Tru9I	TTAA	2 cut(s)	483, 684
TscAI	CASTG	3 cut(s)	385, 674, 806
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	155, 791
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	8 cut(s)	213, 372, 417, 474, 525, 670, 770, 1023
TspRI	CASTG	3 cut(s)	385, 674, 806
VneI	GTGCAC	1 cut(s)	982
VpaK11BI	GGWCC	2 cut(s)	275, 503
XapI	RAATTY	3 cut(s)	602, 677, 933
XceI	RCATGY	1 cut(s)	661
XspI	CTAG	2 cut(s)	348, 1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.