Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002821

Physical Location & Seq

Genomic Coordinates Forward (+)

1601042 .. 1602871

Gene Structure 1830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTCCCTCATCTGTCAATAAGCAGAGCTCAAGGACTGATGAGAGACAAAGCTCGGAGATTGAGTTGTTATCCTGCCCAGTATGCTATGAACCACTAATACGAAAAGGCCCACCTGGTCTAATCCTGCAAGCAATATGCAGGTCGTCGTTCGACTGCAAGAAATGCTACAAGTCGTATTCCAGTGAACACACCTACTTGGATCTCACTGTTACTGCTGGATTGAAGAAGTACGTTGAAGTTAAACCAGTTGGCACTGAGTTATTCAGGAGATCCTTTATGTCCTTCATTTATGAAAAAGGTTATCGTCAGTATTTTAGACGATATGGCTTCCCAGGTCCTGATGAAGAATTTAAAATGGCTCAGGACTACTTTAAATCCACTGAAGGTGGTGTTCTAGTGGATGTTAGCTGTGGGAGTGGTTTGTTCGCGATAAGATTCGCCAAATCTGGGTCCTATTCAGGAGTTGTGGCACTTGATTTTTCTGAAAATATGCTTCTCCAGTGCTATGATTATCTTATGAGAGACCCTACTAATCTTTTGGCTACTGATCTTGTTCTTGTGAGGGCCGATGTTTCTAGGCTTCCATTCACATCATGTTCAGTTGATGCTGTGCATGCCGGCGCTGCATTGCACTGCTGGCCATCTCCTTCCAACGCTTACAGCCTTCCATTTGCTAAAAACCCGACCTCATTCCGCAAAGAATTTTTAACTTGTGCAAGGGATCTAAGGATGTCAAGAAGCTGCTTGAAATTAATAAATAAATCACTACCAACTGATCAATTCTCATACATTTCTCAGGTTGCTGAAATCACTCGTGTATTACGAAGTGGTGGCATCTTTGTTGGAACCACTTTTCTGCGTTCTAGTCCTTCAAGTACTTCCTGGATATTCAAACCACTCAATGAGAGGGTTCTTCCCAGCGGGAATTATTTTAGGGAGGAAGAGATTGAGGACTTGTGTACATCATGCGGTCTCACAAACTACTCGAGCAAAGTTGACCAATCTTTCATCATCTTTTCTGCTCAGAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

346

Amino Acids

38.76

Weight (kDa)

8.59

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	129 - 286	1.7e-07	Methyltransferase domain
Methyltransf_11	PF08241	134 - 220	3.1e-10	Methyltransferase domain
Methyltransf_25	PF13649	134 - 217	9.2e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41040
fragaria_vesca	FvH4_1g01890 FvH4_1g01891 FvH4_1g01891 FvH4_1g01891
malus_domestica	MD02G1016900.v1.1 MD15G1161300.v1.1 MD15G1161400.v1.1
prunus_persica	Prupe.7G256500_v2.0.a1
pyrus_communis	pycom02g01520 pycom15g14510
rosa_chinensis	RchiOBHm_Chr2g0086891 RchiOBHm_Chr2g0086901
rosa_laevigata	RLG00000015811 RLG00000015812 RLG00000015813 RLG00000015814
rosa_multiflora	Rmu_sc0009060.1_g000008 Rmu_sc0009060.1_g000009 Rmu_sc0009188.1_g000001 Rmu_sc0009188.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154040 Rroxscaffold_2G00154050
rosa_rugosa	Rorug01G0470400 Rorug01G0470500
rosa_samantha	Rh2AG023200 Rh2AG023300 Rh2BG023700 Rh2BG023900 Rh2BG024000 Rh2CG024000 Rh2CG024100 Rh2CG024200 Rh2DG023600 Rh2DG024000 Rh2DG024100
rosa_wichuraiana	Rw2G001820 Rw2G001830 Rw2G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccII	CGCG	1 cut(s)	431
AciI	CCGC	3 cut(s)	697, 924, 972
AclWI	GGATC	3 cut(s)	210, 267, 732
AcoI	YGGCCR	1 cut(s)	641
AcsI	RAATTY	2 cut(s)	350, 704
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	3 cut(s)	233, 880, 964
AfiI	CCNNNNNNNGG	1 cut(s)	450
AgsI	TTSAA	5 cut(s)	226, 239, 751, 876, 895
AjnI	CCWGG	3 cut(s)	115, 334, 884
AluBI	AGCT	4 cut(s)	30, 54, 411, 744
AluI	AGCT	4 cut(s)	30, 54, 411, 744
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	3 cut(s)	40, 519, 980
AlwI	GGATC	3 cut(s)	210, 267, 732
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	988
AoxI	GGCC	3 cut(s)	109, 567, 641
ApeKI	GCWGC	2 cut(s)	626, 744
ApoI	RAATTY	2 cut(s)	350, 704
AseI	ATTAAT	1 cut(s)	755
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	4 cut(s)	110, 338, 453, 567
AvaI	CYCGRG	1 cut(s)	988
AvaII	GGWCC	2 cut(s)	338, 453
BalI	TGGCCA	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	613, 731
BccI	CCATC	1 cut(s)	652
BciT130I	CCWGG	3 cut(s)	117, 336, 886
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	3 cut(s)	40, 519, 980
BfaI	CTAG	3 cut(s)	398, 579, 867
BfoI	RGCGCY	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	2 cut(s)	627, 745
BlsI	GCNGC	2 cut(s)	628, 746
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	3 cut(s)	117, 336, 886
Bme18I	GGWCC	2 cut(s)	338, 453
BmeT110I	CYCGRG	1 cut(s)	988
BmgT120I	GGNCC	4 cut(s)	110, 338, 453, 567
BmiI	GGNNCC	3 cut(s)	6, 454, 850
BmrFI	CCNGG	3 cut(s)	117, 336, 886
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	598, 846
BmuI	ACTGGG	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	16
BsaI	GGTCTC	2 cut(s)	519, 980
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	4 cut(s)	80, 183, 248, 502
Bse3DI	GCAATG	1 cut(s)	629
BseBI	CCWGG	3 cut(s)	117, 336, 886
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	409, 738
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	3 cut(s)	249, 377, 812
BseNI	ACTGG	4 cut(s)	80, 183, 248, 502
BseXI	GCAGC	2 cut(s)	613, 731
BseYI	CCCAGC	1 cut(s)	920
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	3 cut(s)	111, 569, 643
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	988
BsiSI	CCGG	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmAI	GTCTC	3 cut(s)	40, 519, 980
BsnI	GGCC	3 cut(s)	111, 569, 643
Bso31I	GGTCTC	2 cut(s)	519, 980
BsoBI	CYCGRG	1 cut(s)	988
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	962
Bsp143I	GATC	5 cut(s)	202, 272, 550, 724, 778
Bsp68I	TCGCGA	1 cut(s)	431
BspACI	CCGC	3 cut(s)	697, 924, 972
BspANI	GGCC	3 cut(s)	111, 569, 643
BspCNI	CTCAG	3 cut(s)	250, 376, 811
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	3 cut(s)	6, 454, 850
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	3 cut(s)	210, 267, 732
BspTNI	GGTCTC	2 cut(s)	519, 980
BsrDI	GCAATG	1 cut(s)	629
BsrFI	RCCGGY	1 cut(s)	620
BsrGI	TGTACA	1 cut(s)	962
BsrI	ACTGG	4 cut(s)	80, 183, 248, 502
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	5 cut(s)	202, 272, 550, 724, 778
BssSI	CACGAG	1 cut(s)	816
Bst2BI	CACGAG	1 cut(s)	816
Bst2UI	CCWGG	3 cut(s)	117, 336, 886
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	939
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	962
BstC8I	GCNNGC	4 cut(s)	132, 618, 622, 641
BstDEI	CTNAG	5 cut(s)	258, 363, 728, 798, 1026
BstF5I	GGATG	2 cut(s)	409, 738
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	5 cut(s)	205, 275, 553, 727, 781
BstMAI	GTCTC	3 cut(s)	40, 519, 980
BstMBI	GATC	5 cut(s)	202, 272, 550, 724, 778
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 165, 617, 626, 640
BstNI	CCWGG	3 cut(s)	117, 336, 886
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	115, 334, 884
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	613, 731
BstX2I	RGATCY	3 cut(s)	202, 272, 724
BstYI	RGATCY	3 cut(s)	202, 272, 724
BsuRI	GGCC	3 cut(s)	111, 569, 643
BtsCI	GGATG	2 cut(s)	409, 738
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	6 cut(s)	190, 207, 255, 381, 509, 634
BtuMI	TCGCGA	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	4 cut(s)	132, 618, 622, 641
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	626
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	4 cut(s)	110, 338, 453, 567
CsiI	ACCWGGT	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	232, 879, 963
CviAII	CATG	3 cut(s)	597, 617, 969
CviQI	GTAC	3 cut(s)	232, 879, 963
DdeI	CTNAG	5 cut(s)	258, 363, 728, 798, 1026
DpnI	GATC	5 cut(s)	204, 274, 552, 726, 780
DpnII	GATC	5 cut(s)	202, 272, 550, 724, 778
DraI	TTTAAA	2 cut(s)	355, 376
EaeI	YGGCCR	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	2 cut(s)	519, 980
Eco47I	GGWCC	2 cut(s)	338, 453
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	988
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	2 cut(s)	338, 453
EcoRII	CCWGG	3 cut(s)	115, 334, 884
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	3 cut(s)	600, 620, 972
FatI	CATG	3 cut(s)	596, 616, 968
FauI	CCCGC	1 cut(s)	917
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	2 cut(s)	627, 745
FokI	GGATG	2 cut(s)	416, 745
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	627, 745
FspBI	CTAG	3 cut(s)	398, 579, 867
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	2 cut(s)	627, 745
GsaI	CCCAGC	1 cut(s)	924
GsuI	CTGGAG	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	3 cut(s)	111, 569, 643
HapII	CCGG	1 cut(s)	621
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	3 cut(s)	600, 620, 972
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	621
Hpy166II	GTNNAC	3 cut(s)	188, 963, 1000
Hpy188I	TCNGA	3 cut(s)	58, 487, 1029
Hpy188III	TCNNGA	6 cut(s)	268, 341, 365, 430, 462, 738
Hpy8I	GTNNAC	3 cut(s)	188, 963, 1000
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	5 cut(s)	295, 380, 660, 677, 882
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	7 cut(s)	130, 141, 159, 616, 629, 634, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 165, 617, 626, 640
HpyF3I	CTNAG	5 cut(s)	258, 363, 728, 798, 1026
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	600, 620, 972
HspAI	GCGC	1 cut(s)	624
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	202, 272, 550, 724, 778
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	613, 731
LweI	GCATC	2 cut(s)	598, 846
MabI	ACCWGGT	1 cut(s)	115
MaeI	CTAG	3 cut(s)	398, 579, 867
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	5 cut(s)	204, 274, 552, 726, 780
MboI	GATC	5 cut(s)	202, 272, 550, 724, 778
MboII	GAAGA	4 cut(s)	238, 359, 908, 956
MflI	RGATCY	3 cut(s)	202, 272, 724
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	643
MluCI	AATT	5 cut(s)	350, 704, 752, 782, 928
MluNI	TGGCCA	1 cut(s)	643
MmeI	TCCRAC	2 cut(s)	678, 826
MnlI	CCTC	6 cut(s)	19, 558, 700, 903, 934, 946
Mox20I	TGGCCA	1 cut(s)	643
MroNI	GCCGGC	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	643
MseI	TTAA	5 cut(s)	243, 354, 375, 710, 755
Msp20I	TGGCCA	1 cut(s)	643
MspA1I	CMGCKG	1 cut(s)	924
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	3 cut(s)	117, 336, 886
MvaI	CCWGG	3 cut(s)	117, 336, 886
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	5 cut(s)	84, 165, 617, 626, 640
NaeI	GCCGGC	1 cut(s)	622
NdeII	GATC	5 cut(s)	202, 272, 550, 724, 778
NgoMIV	GCCGGC	1 cut(s)	620
NlaIII	CATG	3 cut(s)	600, 620, 972
NlaIV	GGNNCC	3 cut(s)	6, 454, 850
NruI	TCGCGA	1 cut(s)	431
NspI	RCATGY	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	620
PaeR7I	CTCGAG	1 cut(s)	988
PcsI	WCGNNNNNNNCGW	1 cut(s)	823
PdiI	GCCGGC	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	438
PfoI	TCCNGGA	1 cut(s)	884
PkrI	GCNGC	2 cut(s)	628, 746
PpuMI	RGGWCCY	2 cut(s)	338, 453
PshBI	ATTAAT	1 cut(s)	755
Psp124BI	GAGCTC	1 cut(s)	32
Psp5II	RGGWCCY	2 cut(s)	338, 453
Psp6I	CCWGG	3 cut(s)	115, 334, 884
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	3 cut(s)	115, 334, 884
PspN4I	GGNNCC	3 cut(s)	6, 454, 850
PspPI	GGNCC	4 cut(s)	110, 338, 453, 567
PspPPI	RGGWCCY	2 cut(s)	338, 453
PspXI	VCTCGAGB	1 cut(s)	988
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	3 cut(s)	202, 272, 724
RruI	TCGCGA	1 cut(s)	431
RsaI	GTAC	3 cut(s)	233, 880, 964
RsaNI	GTAC	3 cut(s)	232, 879, 963
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	5 cut(s)	243, 354, 375, 710, 755
SatI	GCNGC	2 cut(s)	627, 745
Sau3AI	GATC	5 cut(s)	202, 272, 550, 724, 778
Sau96I	GGNCC	4 cut(s)	110, 338, 453, 567
ScaI	AGTACT	1 cut(s)	880
ScrFI	CCNGG	3 cut(s)	117, 336, 886
SduI	GDGCHC	1 cut(s)	32
SexAI	ACCWGGT	1 cut(s)	115
SfaNI	GCATC	2 cut(s)	598, 846
Sfr274I	CTCGAG	1 cut(s)	988
SinI	GGWCC	2 cut(s)	338, 453
SlaI	CTCGAG	1 cut(s)	988
SmlI	CTYRAG	2 cut(s)	31, 988
SmoI	CTYRAG	2 cut(s)	31, 988
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	5 cut(s)	350, 704, 752, 782, 928
SsiI	CCGC	3 cut(s)	697, 924, 972
SspMI	CTAG	3 cut(s)	398, 579, 867
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	115, 334, 884
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	153, 989
TasI	AATT	5 cut(s)	350, 704, 752, 782, 928
TatI	WGTACW	2 cut(s)	878, 962
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	5 cut(s)	243, 354, 375, 710, 755
Tru9I	TTAA	5 cut(s)	243, 354, 375, 710, 755
TscAI	CASTG	6 cut(s)	190, 214, 262, 388, 509, 641
TseI	GCWGC	2 cut(s)	626, 744
TspDTI	ATGAA	5 cut(s)	105, 277, 309, 360, 1000
TspRI	CASTG	6 cut(s)	190, 214, 262, 388, 509, 641
VpaK11BI	GGWCC	2 cut(s)	338, 453
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	2 cut(s)	350, 704
XceI	RCATGY	1 cut(s)	620
XhoI	CTCGAG	1 cut(s)	988
XspI	CTAG	3 cut(s)	398, 579, 867
ZrmI	AGTACT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.