Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002821

Physical Location & Seq

Genomic Coordinates Forward (+)

1589538 .. 1591923

Gene Structure 2386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCCACTGAGAAAAGCGAGAGCTTGGAAATGGAGCTGTTATCATGCCCGGTATGCTATGAACCGCTAATTCGAAAAGGCCCAACTGGTCTCAACTTGCAAGCAATATACAGGTCGGTTTTTGAGTGCAAGAAATGCCACAAGTCTTATTCAAGTAAAGATATCTACTTGGATCTTACTGTTACTGCTGGCTTGAAGAAATACATTGAAGTCAAACCAGCTGGGACTGAGTTCTTTAGGAGACCATTTGTTTCCTTCATTTACGAAAGAGGGTGGCGTCAGTATTTCGGAGGCGGCTTCCCAGGTCCTGATGAAGAGTTTAAAATGGCTCAGGAATACTTTAAACCTGCCAAAGGTGGTGTTCTAGTGGATGTAAGCTGTGGGAGTGGTATGTTTGCTAGGAAATTTGCCAAATCCGGAACCTATTCTGGAGTTGTTGCACTTGATTTTTCCGAAAATATGCTCCGGCAGTGCTATGGTTTCGTGACAAGAGACCCTACTACTCTTTTAGCTGCGAATCTTGCTCTTGTAAGGGCAGATATTTCTAGGCTTCCATTTGCATCAGGTTCAGTTGATGCTGTACATGCCGGAGCAGCATTGCACTGCTGGCCCTCTCCTTCCAATGCTGTTGCTGAAATCACTCGTATATTAAGAAGTGGTGGAATCTTTGTTGGAACCACTTTTCTGCGGTCTAGTCCTTCCACTCCATGGATATTCAAGCCCTTTAGAGAAAGGATCCATCAAACCAATACCTATTTGACGGAGGAAGAGCTTGAGGACTTATGTACATCGTGCGGTCTCACCAATTACTCGGTCAAAGTTCAGCAATCTTTCATCATGTTTTCTGCTCAGAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

286

Amino Acids

31.86

Weight (kDa)

8.65

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	115 - 228	1.8e-10	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	116 - 271	2.9e-10	Methyltransferase domain
Methyltransf_31	PF13847	118 - 254	1.2e-12	Methyltransferase domain
Methyltransf_11	PF08241	123 - 224	2.5e-20	Methyltransferase domain
Methyltransf_25	PF13649	123 - 221	5e-16	Methyltransferase domain
Methyltransf_12	PF08242	123 - 223	5e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41040
fragaria_vesca	FvH4_1g01890 FvH4_1g01891 FvH4_1g01891 FvH4_1g01891
malus_domestica	MD02G1016900.v1.1 MD15G1161300.v1.1 MD15G1161400.v1.1
prunus_persica	Prupe.7G256500_v2.0.a1
pyrus_communis	pycom02g01520 pycom15g14510
rosa_chinensis	RchiOBHm_Chr2g0086891 RchiOBHm_Chr2g0086901
rosa_laevigata	RLG00000015811 RLG00000015812 RLG00000015813 RLG00000015814
rosa_multiflora	Rmu_sc0009060.1_g000008 Rmu_sc0009060.1_g000009 Rmu_sc0009188.1_g000001 Rmu_sc0009188.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154040 Rroxscaffold_2G00154050
rosa_rugosa	Rorug01G0470400 Rorug01G0470500
rosa_samantha	Rh2AG023200 Rh2AG023300 Rh2BG023700 Rh2BG023900 Rh2BG024000 Rh2CG024000 Rh2CG024100 Rh2CG024200 Rh2DG023600 Rh2DG024000 Rh2DG024100
rosa_wichuraiana	Rw2G001820 Rw2G001830 Rw2G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	4 cut(s)	65, 294, 688, 795
AclWI	GGATC	3 cut(s)	180, 730, 743
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	2 cut(s)	582, 787
AfiI	CCNNNNNNNGG	2 cut(s)	353, 708
AgsI	TTSAA	4 cut(s)	153, 196, 209, 718
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	6 cut(s)	24, 37, 221, 378, 512, 772
AluI	AGCT	6 cut(s)	24, 37, 221, 378, 512, 772
Alw26I	GTCTC	4 cut(s)	95, 235, 486, 803
AlwI	GGATC	3 cut(s)	180, 730, 743
AlwNI	CAGNNNCTG	1 cut(s)	308
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	3 cut(s)	3, 79, 608
ApeKI	GCWGC	2 cut(s)	512, 593
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	80, 305, 609
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	793
AsuII	TTCGAA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	499, 605
BccI	CCATC	1 cut(s)	747
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	4 cut(s)	95, 235, 486, 803
BfaI	CTAG	4 cut(s)	365, 399, 546, 693
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	3 cut(s)	295, 513, 594
BlsI	GCNGC	3 cut(s)	296, 514, 595
Bme1390I	CCNGG	2 cut(s)	50, 303
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	3 cut(s)	80, 305, 609
BmiI	GGNNCC	3 cut(s)	421, 676, 737
BmrFI	CCNGG	2 cut(s)	50, 303
BmsI	GCATC	2 cut(s)	565, 569
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	794
BpuMI	CCSGG	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	277
BsaI	GGTCTC	4 cut(s)	95, 235, 486, 803
BsaJI	CCNNGG	2 cut(s)	301, 707
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 708
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	596
BseAI	TCCGGA	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	301, 707
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	353, 708
BseMI	GCAATG	1 cut(s)	596
BseMII	CTCAG	2 cut(s)	219, 344
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	499, 605
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	3 cut(s)	5, 81, 610
BsiSI	CCGG	4 cut(s)	50, 417, 466, 588
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	353, 708
BsmAI	GTCTC	4 cut(s)	95, 235, 486, 803
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	5, 81, 610
Bso31I	GGTCTC	4 cut(s)	95, 235, 486, 803
Bsp119I	TTCGAA	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	416
Bsp1407I	TGTACA	2 cut(s)	580, 785
Bsp143I	GATC	2 cut(s)	172, 735
Bsp19I	CCATGG	1 cut(s)	707
BspACI	CCGC	4 cut(s)	65, 294, 688, 795
BspANI	GGCC	3 cut(s)	5, 81, 610
BspCNI	CTCAG	2 cut(s)	220, 343
BspEI	TCCGGA	1 cut(s)	416
BspLI	GGNNCC	3 cut(s)	421, 676, 737
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	3 cut(s)	180, 730, 743
BspQI	GCTCTTC	1 cut(s)	762
BspT104I	TTCGAA	1 cut(s)	73
BspTNI	GGTCTC	4 cut(s)	95, 235, 486, 803
BsrDI	GCAATG	1 cut(s)	596
BsrGI	TGTACA	2 cut(s)	580, 785
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	301, 707
BssMI	GATC	2 cut(s)	172, 735
BssNI	GRCGYC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	707
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	309, 762
BstACI	GRCGYC	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstAUI	TGTACA	2 cut(s)	580, 785
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	102, 190, 608
BstDEI	CTNAG	4 cut(s)	9, 228, 330, 849
BstDSI	CCRYGG	1 cut(s)	707
BstENI	CCTNNNNNAGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	2 cut(s)	175, 738
BstMAI	GTCTC	4 cut(s)	95, 235, 486, 803
BstMBI	GATC	2 cut(s)	172, 735
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 135, 521, 584, 593, 607
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	48, 301
BstV1I	GCAGC	2 cut(s)	499, 605
BstX2I	RGATCY	2 cut(s)	172, 735
BstYI	RGATCY	2 cut(s)	172, 735
BsuRI	GGCC	3 cut(s)	5, 81, 610
BtgI	CCRYGG	1 cut(s)	707
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	2 cut(s)	476, 601
BtsIMutI	CAGTG	3 cut(s)	6, 476, 601
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	102, 190, 608
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	80, 305, 609
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	581, 786
CviAII	CATG	5 cut(s)	45, 584, 708, 838, 858
CviQI	GTAC	2 cut(s)	581, 786
DdeI	CTNAG	4 cut(s)	9, 228, 330, 849
DpnI	GATC	2 cut(s)	174, 737
DpnII	GATC	2 cut(s)	172, 735
DraI	TTTAAA	2 cut(s)	322, 343
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	309, 762
EarI	CTCTTC	2 cut(s)	309, 762
Eco130I	CCWWGG	1 cut(s)	707
Eco31I	GGTCTC	4 cut(s)	95, 235, 486, 803
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	5 cut(s)	48, 587, 711, 841, 861
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	5 cut(s)	44, 583, 707, 837, 857
Fnu4HI	GCNGC	3 cut(s)	295, 513, 594
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	3 cut(s)	295, 513, 594
FspBI	CTAG	4 cut(s)	365, 399, 546, 693
GluI	GCNGC	3 cut(s)	295, 513, 594
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	5, 81, 610
HapII	CCGG	4 cut(s)	50, 417, 466, 588
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	5 cut(s)	48, 587, 711, 841, 861
HinfI	GANTC	2 cut(s)	517, 663
HpaII	CCGG	4 cut(s)	50, 417, 466, 588
HphI	GGTGA	1 cut(s)	793
Hpy188I	TCNGA	3 cut(s)	290, 454, 852
Hpy188III	TCNNGA	5 cut(s)	308, 332, 417, 429, 484
HpyAV	CCTTC	3 cut(s)	265, 627, 708
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	100, 129, 440, 560, 601
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 135, 521, 584, 593, 607
HpyF3I	CTNAG	4 cut(s)	9, 228, 330, 849
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	5 cut(s)	48, 587, 711, 841, 861
Kpn2I	TCCGGA	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	172, 735
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	3 cut(s)	34, 468, 590
Lsp1109I	GCAGC	2 cut(s)	499, 605
LweI	GCATC	2 cut(s)	565, 569
MaeI	CTAG	4 cut(s)	365, 399, 546, 693
MaeIII	GTNAC	2 cut(s)	181, 484
MalI	GATC	2 cut(s)	174, 737
MboI	GATC	2 cut(s)	172, 735
MboII	GAAGA	3 cut(s)	208, 326, 779
MflI	RGATCY	2 cut(s)	172, 735
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	69, 404, 805
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	5 cut(s)	263, 284, 622, 757, 769
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	321, 342, 650
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	4 cut(s)	50, 417, 466, 588
MspR9I	CCNGG	2 cut(s)	50, 303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	6 cut(s)	54, 135, 521, 584, 593, 607
NciI	CCSGG	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	707
NdeII	GATC	2 cut(s)	172, 735
NlaIII	CATG	5 cut(s)	48, 587, 711, 841, 861
NlaIV	GGNNCC	3 cut(s)	421, 676, 737
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	587
NspV	TTCGAA	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	517, 663
PflMI	CCANNNNNTGG	1 cut(s)	708
PkrI	GCNGC	3 cut(s)	296, 514, 595
PpuMI	RGGWCCY	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	421, 676, 737
PspPI	GGNCC	3 cut(s)	80, 305, 609
PspPPI	RGGWCCY	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	172, 735
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	582, 787
RsaNI	GTAC	2 cut(s)	581, 786
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	3 cut(s)	321, 342, 650
SatI	GCNGC	3 cut(s)	295, 513, 594
Sau3AI	GATC	2 cut(s)	172, 735
Sau96I	GGNCC	3 cut(s)	80, 305, 609
ScrFI	CCNGG	2 cut(s)	50, 303
SfaNI	GCATC	2 cut(s)	565, 569
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	3 cut(s)	69, 404, 805
SsiI	CCGC	4 cut(s)	65, 294, 688, 795
SspMI	CTAG	4 cut(s)	365, 399, 546, 693
StyD4I	CCNGG	2 cut(s)	48, 301
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	73
TaqII	GACCGA	1 cut(s)	802
TasI	AATT	3 cut(s)	69, 404, 805
TatI	WGTACW	2 cut(s)	580, 785
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	517, 663
Tru1I	TTAA	3 cut(s)	321, 342, 650
Tru9I	TTAA	3 cut(s)	321, 342, 650
TscAI	CASTG	3 cut(s)	13, 476, 608
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	2 cut(s)	512, 593
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	4 cut(s)	75, 247, 327, 823
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	3 cut(s)	13, 476, 608
Van91I	CCANNNNNTGG	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	351
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	4 cut(s)	365, 399, 546, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.