Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002821

Physical Location & Seq

Genomic Coordinates Forward (+)

9910614 .. 9913520

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCGACGACATCCTCCTCCTCCACTCTCCACCAAACATTTCTATCCATAAACTACCCTCCCCTACATCACAATTCTCAATTCCGCTCTCCTCATCTCTACCGCCCCTCCCGCCATTCCTCCCACCCCATTCGCGCCACCTCCACCGTCACTCTCCAACCGCAGCGGCGGTCGACCGCCGAGGAAAGTAAAAGCTCCGGCGTTGACCTCGAGCTGCTAGCCTGCCCAATATGCTACGAGCCGCTCATCCGGAAAGGCCCGTCGGGTCTCAACCTGCGAGCAATTTACAGGTCGGGGTTCAAGTGCAGGAAATGCGACAAGTCGTATTCGAGCAAAGACATTTACTTGGACCTTACCGTTACTGCTGGGTTGAAGGAGTACGTTGAGGTAAAACCGGCCGGGACCGAGTTGTTCCGGAGCCCTCTTGTTTCCTTCTTGTATGAAAGGAGTTGGCGCCAGAATTTTAACCGCAGGGGATTTCCGGGTCCCGATGAAGAGTTTAAGATGGCTCAGGACTACTTTAAATCCGTGGAAGCCGGTGTTTTGGTGGATGTGAGCTGTGGGAGCGGCTTGTTTTCGAGGAAGTTTGCGAAATCCGGGACATATTCTGGAGTTGTTGCACTTGATTTTTCGGAGAACATGCTTCGGCAGAGTTATGAATTTTTTAAGAGAGATCCTACTCTTTTAGATACTAATCTTGCCCTTGTGAGGGCGGATGTTGCTAGGCTTCCGTTCTCTTCGGGTTCAGTTGATGCAGTCCACGCCGGTGCAGCGTTGCATTGTTGGCCTTCTCCTTCCAATGCTATTGCTGAAATAACTCGCATATTACGAAGTGGTGGTGTCTTTGTCGGAACCACTTTTCTGCGGTATACTCCATCTACTTCCTGGATACCCCGGCAACTCAGAGAGAGGGCTCGTCAGAGCTATAACTATTTAACGGAGGAGGAGATTGCAGACTTGTGTACATCATGCGGTCTCACCAACTACACGAGCAACGTTCAACAATCTTTCATCATGTTTTCTGCTCAGAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

346

Amino Acids

38.69

Weight (kDa)

9.21

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41040
fragaria_vesca	FvH4_1g01890 FvH4_1g01891 FvH4_1g01891 FvH4_1g01891
malus_domestica	MD02G1016900.v1.1 MD15G1161300.v1.1 MD15G1161400.v1.1
prunus_persica	Prupe.7G256500_v2.0.a1
pyrus_communis	pycom02g01520 pycom15g14510
rosa_chinensis	RchiOBHm_Chr2g0086891 RchiOBHm_Chr2g0086901
rosa_laevigata	RLG00000015811 RLG00000015812 RLG00000015813 RLG00000015814
rosa_multiflora	Rmu_sc0009060.1_g000008 Rmu_sc0009060.1_g000009 Rmu_sc0009188.1_g000001 Rmu_sc0009188.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154040 Rroxscaffold_2G00154050
rosa_rugosa	Rorug01G0470400 Rorug01G0470500
rosa_samantha	Rh2AG023200 Rh2AG023300 Rh2BG023700 Rh2BG023900 Rh2BG024000 Rh2CG024000 Rh2CG024100 Rh2CG024200 Rh2DG023600 Rh2DG024000 Rh2DG024100
rosa_wichuraiana	Rw2G001820 Rw2G001830 Rw2G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	453
AccBSI	CCGCTC	3 cut(s)	87, 244, 567
AccI	GTMKAC	2 cut(s)	173, 869
AccII	CGCG	1 cut(s)	135
AccIII	TCCGGA	2 cut(s)	249, 414
AclI	AACGTT	1 cut(s)	996
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	460, 659
AcyI	GRCGYC	1 cut(s)	454
AfaI	GTAC	2 cut(s)	380, 964
AfiI	CCNNNNNNNGG	2 cut(s)	708, 709
AgsI	TTSAA	3 cut(s)	301, 373, 1001
AjnI	CCWGG	1 cut(s)	884
AleI	CACNNNNGTG	1 cut(s)	765
AluBI	AGCT	4 cut(s)	195, 214, 558, 924
AluI	AGCT	4 cut(s)	195, 214, 558, 924
Alw26I	GTCTC	2 cut(s)	272, 980
AlwI	GGATC	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	209
Aor13HI	TCCGGA	2 cut(s)	249, 414
AoxI	GGCC	3 cut(s)	256, 396, 785
ApeKI	GCWGC	3 cut(s)	163, 214, 770
ApoI	RAATTY	2 cut(s)	460, 659
AspLEI	GCGC	2 cut(s)	137, 456
AspS9I	GGNCC	4 cut(s)	257, 349, 402, 485
AsuC2I	CCSGG	4 cut(s)	400, 483, 598, 895
AsuHPI	GGTGA	1 cut(s)	970
AsuNHI	GCTAGC	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	3 cut(s)	349, 402, 485
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	2 cut(s)	422, 916
BauI	CACGAG	1 cut(s)	988
BbvI	GCAGC	3 cut(s)	175, 201, 782
BccI	CCATC	2 cut(s)	499, 883
BciT130I	CCWGG	1 cut(s)	886
BciVI	GTATCC	1 cut(s)	882
BcnI	CCSGG	4 cut(s)	400, 483, 598, 895
BcoDI	GTCTC	2 cut(s)	272, 980
BfaI	CTAG	2 cut(s)	218, 723
BfoI	RGCGCY	1 cut(s)	457
BfuAI	ACCTGC	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	882
BisI	GCNGC	6 cut(s)	164, 167, 215, 242, 568, 771
BlsI	GCNGC	6 cut(s)	165, 168, 216, 243, 569, 772
Bme1390I	CCNGG	5 cut(s)	400, 483, 598, 886, 895
Bme18I	GGWCC	3 cut(s)	349, 402, 485
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	4 cut(s)	257, 349, 402, 485
BmiI	GGNNCC	6 cut(s)	403, 419, 455, 486, 487, 853
BmrFI	CCNGG	5 cut(s)	400, 483, 598, 886, 895
BmsI	GCATC	1 cut(s)	742
BmtI	GCTAGC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	4 cut(s)	400, 483, 598, 895
BsaBI	GATNNNNATC	1 cut(s)	693
BsaHI	GRCGYC	1 cut(s)	454
BsaI	GGTCTC	2 cut(s)	272, 980
BsaJI	CCNNGG	3 cut(s)	180, 528, 893
BsaWI	WCCGGW	2 cut(s)	249, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	708, 709
Bse118I	RCCGGY	3 cut(s)	394, 536, 764
Bse8I	GATNNNNATC	1 cut(s)	693
BseAI	TCCGGA	2 cut(s)	249, 414
BseBI	CCWGG	1 cut(s)	886
BseDI	CCNNGG	3 cut(s)	180, 528, 893
BseGI	GGATG	4 cut(s)	11, 246, 556, 721
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	2 cut(s)	708, 709
BseMII	CTCAG	2 cut(s)	524, 916
BseRI	GAGGAG	5 cut(s)	7, 10, 81, 956, 959
BseX3I	CGGCCG	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	175, 201, 782
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	325, 789
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	3 cut(s)	173, 177, 399
BshFI	GGCC	3 cut(s)	258, 398, 787
BshNI	GGYRCC	1 cut(s)	453
BsiEI	CGRYCG	3 cut(s)	173, 177, 399
BsiHKCI	CYCGRG	1 cut(s)	209
BslFI	GGGAC	3 cut(s)	415, 471, 613
BslI	CCNNNNNNNGG	2 cut(s)	708, 709
BsmAI	GTCTC	2 cut(s)	272, 980
BsmFI	GGGAC	3 cut(s)	415, 471, 613
BsnI	GGCC	3 cut(s)	258, 398, 787
Bso31I	GGTCTC	2 cut(s)	272, 980
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	422, 916
Bsp13I	TCCGGA	2 cut(s)	249, 414
Bsp1407I	TGTACA	1 cut(s)	962
Bsp143I	GATC	1 cut(s)	673
BspANI	GGCC	3 cut(s)	258, 398, 787
BspCNI	CTCAG	2 cut(s)	523, 915
BspEI	TCCGGA	2 cut(s)	249, 414
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	6 cut(s)	403, 419, 455, 486, 487, 853
BspMI	ACCTGC	1 cut(s)	282
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	668
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	2 cut(s)	272, 980
BsrBI	CCGCTC	3 cut(s)	87, 244, 567
BsrFI	RCCGGY	3 cut(s)	394, 536, 764
BsrGI	TGTACA	1 cut(s)	962
BssAI	RCCGGY	3 cut(s)	394, 536, 764
BssECI	CCNNGG	3 cut(s)	180, 528, 893
BssMI	GATC	1 cut(s)	673
BssNAI	GTATAC	1 cut(s)	870
BssNI	GRCGYC	1 cut(s)	454
BssSI	CACGAG	1 cut(s)	988
Bst1107I	GTATAC	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	988
Bst2UI	CCWGG	1 cut(s)	886
Bst4CI	ACNGT	2 cut(s)	148, 358
Bst6I	CTCTTC	2 cut(s)	489, 742
BstACI	GRCGYC	1 cut(s)	454
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	962
BstC8I	GCNNGC	3 cut(s)	219, 223, 279
BstDEI	CTNAG	3 cut(s)	510, 902, 1026
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	11, 246, 556, 721
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	2 cut(s)	137, 456
BstKTI	GATC	1 cut(s)	676
BstMAI	GTCTC	2 cut(s)	272, 980
BstMBI	GATC	1 cut(s)	673
BstMCI	CGRYCG	3 cut(s)	173, 177, 399
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 231, 312, 564, 719, 761, 770, 784
BstNI	CCWGG	1 cut(s)	886
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	5 cut(s)	398, 481, 596, 884, 893
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	175, 201, 782
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BstZ17I	GTATAC	1 cut(s)	870
BstZI	CGGCCG	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	882
BsuRI	GGCC	3 cut(s)	258, 398, 787
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	4 cut(s)	11, 246, 556, 721
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	219, 223, 279
CfoI	GCGC	2 cut(s)	137, 456
Cfr10I	RCCGGY	3 cut(s)	394, 536, 764
Cfr13I	GGNCC	4 cut(s)	257, 349, 402, 485
Csp6I	GTAC	2 cut(s)	379, 963
CviAII	CATG	3 cut(s)	640, 969, 1015
CviQI	GTAC	2 cut(s)	379, 963
DdeI	CTNAG	3 cut(s)	510, 902, 1026
DinI	GGCGCC	1 cut(s)	455
DpnI	GATC	1 cut(s)	675
DpnII	GATC	1 cut(s)	673
DraI	TTTAAA	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	396
EagI	CGGCCG	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	489, 742
EarI	CTCTTC	2 cut(s)	489, 742
EciI	GGCGGA	1 cut(s)	728
EclXI	CGGCCG	1 cut(s)	396
Eco24I	GRGCYC	2 cut(s)	422, 916
Eco31I	GGTCTC	2 cut(s)	272, 980
Eco47I	GGWCC	3 cut(s)	349, 402, 485
Eco52I	CGGCCG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	884
EcoT38I	GRGCYC	2 cut(s)	422, 916
EgeI	GGCGCC	1 cut(s)	455
EheI	GGCGCC	1 cut(s)	455
FaeI	CATG	3 cut(s)	643, 972, 1018
FaqI	GGGAC	3 cut(s)	415, 471, 613
FatI	CATG	3 cut(s)	639, 968, 1014
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	2 cut(s)	173, 869
Fnu4HI	GCNGC	6 cut(s)	164, 167, 215, 242, 568, 771
FokI	GGATG	3 cut(s)	233, 563, 728
FriOI	GRGCYC	2 cut(s)	422, 916
Fsp4HI	GCNGC	6 cut(s)	164, 167, 215, 242, 568, 771
FspBI	CTAG	2 cut(s)	218, 723
GlaI	GCGC	2 cut(s)	136, 455
GluI	GCNGC	6 cut(s)	164, 167, 215, 242, 568, 771
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	3 cut(s)	258, 398, 787
HhaI	GCGC	2 cut(s)	137, 456
Hin1I	GRCGYC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	643, 972, 1018
Hin6I	GCGC	2 cut(s)	135, 454
HinP1I	GCGC	2 cut(s)	135, 454
HincII	GTYRAC	2 cut(s)	174, 205
HindII	GTYRAC	2 cut(s)	174, 205
HphI	GGTGA	1 cut(s)	970
Hpy166II	GTNNAC	5 cut(s)	174, 205, 760, 870, 963
Hpy188I	TCNGA	5 cut(s)	634, 851, 905, 921, 1029
Hpy188III	TCNNGA	5 cut(s)	250, 415, 488, 512, 609
Hpy8I	GTNNAC	5 cut(s)	174, 205, 760, 870, 963
Hpy99I	CGWCG	2 cut(s)	10, 265
HpyAV	CCTTC	4 cut(s)	367, 442, 798, 804
HpyCH4III	ACNGT	2 cut(s)	148, 358
HpyCH4IV	ACGT	2 cut(s)	381, 996
HpyCH4V	TGCA	6 cut(s)	306, 620, 755, 770, 778, 953
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 231, 312, 564, 719, 761, 770, 784
HpyF3I	CTNAG	3 cut(s)	510, 902, 1026
HpySE526I	ACGT	2 cut(s)	381, 996
Hsp92I	GRCGYC	1 cut(s)	454
Hsp92II	CATG	3 cut(s)	643, 972, 1018
HspAI	GCGC	2 cut(s)	135, 454
KasI	GGCGCC	1 cut(s)	453
KflI	GGGWCCC	1 cut(s)	485
Kpn2I	TCCGGA	2 cut(s)	249, 414
Kzo9I	GATC	1 cut(s)	673
LmnI	GCTCC	3 cut(s)	200, 417, 564
Lsp1109I	GCAGC	3 cut(s)	175, 201, 782
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	2 cut(s)	218, 723
MaeII	ACGT	2 cut(s)	381, 996
MaeIII	GTNAC	2 cut(s)	148, 358
MalI	GATC	1 cut(s)	675
MbiI	CCGCTC	3 cut(s)	87, 244, 567
MboI	GATC	1 cut(s)	673
MboII	GAAGA	2 cut(s)	506, 729
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	2 cut(s)	422, 916
MluCI	AATT	5 cut(s)	73, 80, 282, 460, 659
Mly113I	GGCGCC	1 cut(s)	454
MmeI	TCCRAC	2 cut(s)	181, 829
MroI	TCCGGA	2 cut(s)	249, 414
MseI	TTAA	6 cut(s)	465, 501, 522, 666, 935, 1036
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	166
MspR9I	CCNGG	5 cut(s)	400, 483, 598, 886, 895
MvaI	CCWGG	1 cut(s)	886
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	8 cut(s)	111, 231, 312, 564, 719, 761, 770, 784
NarI	GGCGCC	1 cut(s)	454
NciI	CCSGG	4 cut(s)	400, 483, 598, 895
NdeII	GATC	1 cut(s)	673
NheI	GCTAGC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	643, 972, 1018
NlaIV	GGNNCC	6 cut(s)	403, 419, 455, 486, 487, 853
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	643
OliI	CACNNNNGTG	1 cut(s)	765
PaeR7I	CTCGAG	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	826
PfoI	TCCNGGA	2 cut(s)	596, 884
PkrI	GCNGC	6 cut(s)	165, 168, 216, 243, 569, 772
PluTI	GGCGCC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	485
Psp1406I	AACGTT	1 cut(s)	996
Psp5II	RGGWCCY	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	884
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	884
PspN4I	GGNNCC	6 cut(s)	403, 419, 455, 486, 487, 853
PspPI	GGNCC	4 cut(s)	257, 349, 402, 485
PspPPI	RGGWCCY	1 cut(s)	485
PspXI	VCTCGAGB	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	673
RsaI	GTAC	2 cut(s)	380, 964
RsaNI	GTAC	2 cut(s)	379, 963
RseI	CAYNNNNRTG	1 cut(s)	765
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	6 cut(s)	465, 501, 522, 666, 935, 1036
SatI	GCNGC	6 cut(s)	164, 167, 215, 242, 568, 771
Sau3AI	GATC	1 cut(s)	673
Sau96I	GGNCC	4 cut(s)	257, 349, 402, 485
ScrFI	CCNGG	5 cut(s)	400, 483, 598, 886, 895
SduI	GDGCHC	2 cut(s)	422, 916
SfaNI	GCATC	1 cut(s)	742
SfoI	GGCGCC	1 cut(s)	455
Sfr274I	CTCGAG	1 cut(s)	209
SgrAI	CRCCGGYG	1 cut(s)	764
SinI	GGWCC	3 cut(s)	349, 402, 485
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	73, 80, 282, 460, 659
SspDI	GGCGCC	1 cut(s)	453
SspMI	CTAG	2 cut(s)	218, 723
StyD4I	CCNGG	5 cut(s)	398, 481, 596, 884, 893
TaaI	ACNGT	2 cut(s)	148, 358
TaiI	ACGT	2 cut(s)	384, 999
TaqI	TCGA	4 cut(s)	173, 210, 329, 578
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	5 cut(s)	73, 80, 282, 460, 659
TatI	WGTACW	1 cut(s)	962
TauI	GCSGC	3 cut(s)	169, 244, 570
Tru1I	TTAA	6 cut(s)	465, 501, 522, 666, 935, 1036
Tru9I	TTAA	6 cut(s)	465, 501, 522, 666, 935, 1036
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	3 cut(s)	163, 214, 770
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	456, 507, 672, 1000
TspGWI	ACGGA	3 cut(s)	517, 720, 953
VpaK11BI	GGWCC	3 cut(s)	349, 402, 485
XapI	RAATTY	2 cut(s)	460, 659
XceI	RCATGY	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	882
XhoI	CTCGAG	1 cut(s)	209
XmiI	GTMKAC	2 cut(s)	173, 869
XspI	CTAG	2 cut(s)	218, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.