Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002821

Physical Location & Seq

Genomic Coordinates Forward (+)

1612350 .. 1614569

Gene Structure 2220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG024000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCCACGACGGCTCCCTCCTCCCTCCACCAAACATTTCTATCCCCAAAACACCCTCGCCTCCACCACAATTCCCATCTCTCTCCTCCTCGTCTCCGCTTCCACTCTCTCCCCATTCGCGCCACCTCTGCAATCACTCTACAACCGGAGAAGAGCTCGAGCACCCAGAAAAGTCAAAGCTCGGGCATTGAGTTTTTGTCATGCCCAGTTTGCTATGAGCCGCTAATACGAAAAGGCCCAACTGGTCTAAACCTGGAAGCAATATACAGGTCAGGTTTCAAGTGCAAGAAATGTGACAAGTCGTATTCCAGCAAAGACATTTACTTGGACCTTACTGTTACTGCTGGGTTGAAGCAGTACGTTGAAGTCAACCCAGCTAGGACTGAGTTGTTTAGGAGCCCACTGGTGTCGTTTTTGTATGAAAGAGGTTGGCGCCAGAATTTTAGTAGTAGTGGATTTCCAGGTCCTGATGAAGAGTTTAAAATGGCTCAGGACTACTTTAAATCCGCGGAAGGCGGTTTTCTAGTGGATGTGAGCTGTGGGAGTGGTTTGTTTTCGAGGAAATTTGCGAAATCAGGGAGTTATTCTGGAGTTGTGGCGCTTGATTTTTCGGAAAATATGCTCCGACAGTGCTATGATTTTCTTAAAAGAGATGCTGCTCTTTTGGCTACGAATCTTGCTCTTGTAAGGGCAGATGTTTCTAGGCTTCCATTTGCATCAGGTTCAGTCGATGCAGTCCATGCCGGTGCAGCACTGCACTGTTGGCCCTCTCCTTCAAATGCTGTTCATTTACTCTGGTTTACGATGGAAAACCTGGCTATATTGATCTTCAATAGGGAGCTTTCATGGGAAGAATATCCATTGTCCTCCTGGCTGAATGTTACTCAGATGCCTCTTTATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

301

Amino Acids

33.61

Weight (kDa)

8.77

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	168 - 250	1e-06	ubiE/COQ5 methyltransferase family
Methyltransf_11	PF08241	176 - 262	1e-13	Methyltransferase domain
Methyltransf_25	PF13649	176 - 258	6.7e-13	Methyltransferase domain
Methyltransf_12	PF08242	176 - 261	1.9e-07	Methyltransferase domain
Methyltransf_31	PF13847	176 - 261	5.9e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41040
fragaria_vesca	FvH4_1g01890 FvH4_1g01891 FvH4_1g01891 FvH4_1g01891
malus_domestica	MD02G1016900.v1.1 MD15G1161300.v1.1 MD15G1161400.v1.1
prunus_persica	Prupe.7G256500_v2.0.a1
pyrus_communis	pycom02g01520 pycom15g14510
rosa_chinensis	RchiOBHm_Chr2g0086891 RchiOBHm_Chr2g0086901
rosa_laevigata	RLG00000015811 RLG00000015812 RLG00000015813 RLG00000015814
rosa_multiflora	Rmu_sc0009060.1_g000008 Rmu_sc0009060.1_g000009 Rmu_sc0009188.1_g000001 Rmu_sc0009188.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154040 Rroxscaffold_2G00154050
rosa_rugosa	Rorug01G0470400 Rorug01G0470500
rosa_samantha	Rh2AG023200 Rh2AG023300 Rh2BG023700 Rh2BG023900 Rh2BG024000 Rh2CG024000 Rh2CG024100 Rh2CG024200 Rh2DG023600 Rh2DG024000 Rh2DG024100
rosa_wichuraiana	Rw2G001820 Rw2G001830 Rw2G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AccII	CGCG	2 cut(s)	120, 509
AciI	CCGC	5 cut(s)	97, 221, 507, 509, 516
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	439, 563
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	5 cut(s)	280, 352, 365, 777, 832
AjnI	CCWGG	4 cut(s)	252, 460, 813, 869
AluBI	AGCT	5 cut(s)	156, 180, 377, 537, 841
AluI	AGCT	5 cut(s)	156, 180, 377, 537, 841
Alw21I	GWGCWC	2 cut(s)	158, 164
Alw26I	GTCTC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	467
Ama87I	CYCGRG	2 cut(s)	157, 181
AoxI	GGCC	3 cut(s)	3, 235, 764
ApeKI	GCWGC	2 cut(s)	656, 749
ApoI	RAATTY	2 cut(s)	439, 563
AspLEI	GCGC	3 cut(s)	122, 435, 601
AspS9I	GGNCC	4 cut(s)	236, 328, 464, 765
AvaI	CYCGRG	2 cut(s)	157, 181
AvaII	GGWCC	2 cut(s)	328, 464
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	2 cut(s)	158, 401
Bbv12I	GWGCWC	2 cut(s)	158, 164
BbvI	GCAGC	2 cut(s)	643, 761
BccI	CCATC	2 cut(s)	84, 799
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	4 cut(s)	254, 462, 815, 871
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	3 cut(s)	378, 524, 702
BfoI	RGCGCY	2 cut(s)	436, 602
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	3 cut(s)	221, 657, 750
BlsI	GCNGC	3 cut(s)	222, 658, 751
Bme1390I	CCNGG	4 cut(s)	254, 462, 815, 871
Bme18I	GGWCC	2 cut(s)	328, 464
BmeT110I	CYCGRG	2 cut(s)	157, 181
BmgT120I	GGNCC	4 cut(s)	236, 328, 464, 765
BmiI	GGNNCC	3 cut(s)	15, 398, 434
BmrFI	CCNGG	4 cut(s)	254, 462, 815, 871
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	4 cut(s)	643, 721, 725, 879
BmuI	ACTGGG	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpmI	CTGGAG	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	3 cut(s)	206, 247, 408
BseBI	CCWGG	4 cut(s)	254, 462, 815, 871
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	375, 503, 899
BseNI	ACTGG	3 cut(s)	206, 247, 408
BseRI	GAGGAG	3 cut(s)	10, 75, 78
BseXI	GCAGC	2 cut(s)	643, 761
BseYI	CCCAGC	2 cut(s)	344, 373
BsgI	GTGCAG	2 cut(s)	740, 768
Bsh1236I	CGCG	2 cut(s)	120, 509
BshFI	GGCC	3 cut(s)	5, 237, 766
BshNI	GGYRCC	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	158, 164
BsiHKCI	CYCGRG	2 cut(s)	157, 181
BsiSI	CCGG	2 cut(s)	146, 744
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	5, 237, 766
BsoBI	CYCGRG	2 cut(s)	157, 181
Bsp1286I	GDGCHC	3 cut(s)	158, 164, 401
Bsp143I	GATC	1 cut(s)	825
BspACI	CCGC	5 cut(s)	97, 221, 507, 509, 516
BspANI	GGCC	3 cut(s)	5, 237, 766
BspCNI	CTCAG	3 cut(s)	376, 502, 898
BspFNI	CGCG	2 cut(s)	120, 509
BspLI	GGNNCC	3 cut(s)	15, 398, 434
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	3 cut(s)	206, 247, 408
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	1 cut(s)	825
BssNI	GRCGYC	1 cut(s)	433
Bst2UI	CCWGG	4 cut(s)	254, 462, 815, 871
Bst4CI	ACNGT	3 cut(s)	337, 630, 761
Bst6I	CTCTTC	2 cut(s)	146, 468
BstACI	GRCGYC	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstDEI	CTNAG	3 cut(s)	384, 489, 885
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	2 cut(s)	120, 509
BstH2I	RGCGCY	2 cut(s)	436, 602
BstHHI	GCGC	3 cut(s)	122, 435, 601
BstKTI	GATC	1 cut(s)	828
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	825
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 128, 210, 665, 740, 749, 763
BstNI	CCWGG	4 cut(s)	254, 462, 815, 871
BstSCI	CCNGG	4 cut(s)	252, 460, 813, 869
BstUI	CGCG	2 cut(s)	120, 509
BstV1I	GCAGC	2 cut(s)	643, 761
BsuRI	GGCC	3 cut(s)	5, 237, 766
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	535
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	4 cut(s)	401, 635, 752, 757
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	3 cut(s)	122, 435, 601
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	4 cut(s)	236, 328, 464, 765
Cfr42I	CCGCGG	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	3 cut(s)	201, 740, 846
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	3 cut(s)	384, 489, 885
DinI	GGCGCC	1 cut(s)	434
DpnI	GATC	1 cut(s)	827
DpnII	GATC	1 cut(s)	825
DraI	TTTAAA	2 cut(s)	481, 502
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	146, 468
EarI	CTCTTC	2 cut(s)	146, 468
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	2 cut(s)	158, 401
Eco47I	GGWCC	2 cut(s)	328, 464
Eco53kI	GAGCTC	1 cut(s)	156
Eco88I	CYCGRG	2 cut(s)	157, 181
EcoICRI	GAGCTC	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	4 cut(s)	252, 460, 813, 869
EcoT38I	GRGCYC	2 cut(s)	158, 401
EgeI	GGCGCC	1 cut(s)	434
EheI	GGCGCC	1 cut(s)	434
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	3 cut(s)	204, 743, 849
FatI	CATG	3 cut(s)	200, 739, 845
Fnu4HI	GCNGC	3 cut(s)	221, 657, 750
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	2 cut(s)	158, 401
Fsp4HI	GCNGC	3 cut(s)	221, 657, 750
FspBI	CTAG	3 cut(s)	378, 524, 702
GlaI	GCGC	3 cut(s)	121, 434, 600
GluI	GCNGC	3 cut(s)	221, 657, 750
GsaI	CCCAGC	2 cut(s)	348, 377
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	2 cut(s)	436, 602
HaeIII	GGCC	3 cut(s)	5, 237, 766
HapII	CCGG	2 cut(s)	146, 744
HhaI	GCGC	3 cut(s)	122, 435, 601
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	204, 743, 849
Hin6I	GCGC	3 cut(s)	120, 433, 599
HinP1I	GCGC	3 cut(s)	120, 433, 599
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	673
HpaII	CCGG	2 cut(s)	146, 744
Hpy166II	GTNNAC	2 cut(s)	370, 801
Hpy188I	TCNGA	3 cut(s)	613, 626, 888
Hpy188III	TCNNGA	3 cut(s)	467, 491, 588
Hpy8I	GTNNAC	2 cut(s)	370, 801
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	506, 783
HpyCH4III	ACNGT	3 cut(s)	337, 630, 761
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	6 cut(s)	131, 285, 716, 734, 749, 757
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 128, 210, 665, 740, 749, 763
HpyF3I	CTNAG	3 cut(s)	384, 489, 885
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	3 cut(s)	204, 743, 849
HspAI	GCGC	3 cut(s)	120, 433, 599
KasI	GGCGCC	1 cut(s)	432
KspI	CCGCGG	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	825
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	4 cut(s)	19, 396, 627, 838
Lsp1109I	GCAGC	2 cut(s)	643, 761
LweI	GCATC	4 cut(s)	643, 721, 725, 879
MaeI	CTAG	3 cut(s)	378, 524, 702
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	293, 337, 880
MalI	GATC	1 cut(s)	827
MboI	GATC	1 cut(s)	825
MboII	GAAGA	4 cut(s)	163, 485, 820, 863
MhlI	GDGCHC	3 cut(s)	158, 164, 401
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	70, 439, 563
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	433
MmeI	TCCRAC	1 cut(s)	649
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	480, 501, 645
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	2 cut(s)	146, 744
MspR9I	CCNGG	4 cut(s)	254, 462, 815, 871
MvaI	CCWGG	4 cut(s)	254, 462, 815, 871
MvnI	CGCG	2 cut(s)	120, 509
MwoI	GCNNNNNNNGC	7 cut(s)	11, 128, 210, 665, 740, 749, 763
NarI	GGCGCC	1 cut(s)	433
NdeII	GATC	1 cut(s)	825
NlaIII	CATG	3 cut(s)	204, 743, 849
NlaIV	GGNNCC	3 cut(s)	15, 398, 434
NmuCI	GTSAC	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	673
PkrI	GCNGC	3 cut(s)	222, 658, 751
PluTI	GGCGCC	1 cut(s)	436
PpuMI	RGGWCCY	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	4 cut(s)	252, 460, 813, 869
PspFI	CCCAGC	2 cut(s)	344, 373
PspGI	CCWGG	4 cut(s)	252, 460, 813, 869
PspN4I	GGNNCC	3 cut(s)	15, 398, 434
PspPI	GGNCC	4 cut(s)	236, 328, 464, 765
PspPPI	RGGWCCY	1 cut(s)	464
PspXI	VCTCGAGB	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	158
SacII	CCGCGG	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	480, 501, 645
SatI	GCNGC	3 cut(s)	221, 657, 750
Sau3AI	GATC	1 cut(s)	825
Sau96I	GGNCC	4 cut(s)	236, 328, 464, 765
ScrFI	CCNGG	4 cut(s)	254, 462, 815, 871
SduI	GDGCHC	3 cut(s)	158, 164, 401
SfaNI	GCATC	4 cut(s)	643, 721, 725, 879
SfoI	GGCGCC	1 cut(s)	434
Sfr274I	CTCGAG	1 cut(s)	157
Sfr303I	CCGCGG	1 cut(s)	510
SgrBI	CCGCGG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	328, 464
SlaI	CTCGAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	3 cut(s)	70, 439, 563
SsiI	CCGC	5 cut(s)	97, 221, 507, 509, 516
SspDI	GGCGCC	1 cut(s)	432
SspMI	CTAG	3 cut(s)	378, 524, 702
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	4 cut(s)	252, 460, 813, 869
TaaI	ACNGT	3 cut(s)	337, 630, 761
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	3 cut(s)	158, 557, 729
TasI	AATT	3 cut(s)	70, 439, 563
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	3 cut(s)	480, 501, 645
Tru9I	TTAA	3 cut(s)	480, 501, 645
TscAI	CASTG	4 cut(s)	408, 635, 759, 764
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	656, 749
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	435, 486, 776, 834
TspRI	CASTG	4 cut(s)	408, 635, 759, 764
VpaK11BI	GGWCC	2 cut(s)	328, 464
XapI	RAATTY	2 cut(s)	439, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	867
XhoI	CTCGAG	1 cut(s)	157
XspI	CTAG	3 cut(s)	378, 524, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.