Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002821

Physical Location & Seq

Genomic Coordinates Forward (+)

1392429 .. 1394812

Gene Structure 2384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG023600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCCACTAAGAAAAGCGAGAGCTTGGAAATGGAGCTGTTATCATGCCCGGTATGCTATGAACCGCTAATTCGAAAAGGCCCAACTGGTCTCAACTTGCAAGCAATATACAGGTCGGTTTTTGAATGCAAGAAATGCCACAAGTCTTATTCAAGTATAGATATTTACTTGGATCTTACTGTTACTGCTGGCTTGAAGAAATACGTTGAAGTCAAACCAGCTGGGACTGAGTTCTTCAGGAGACCATTTGTTTCCTTCATTTACGAAAGAGGGTGGCGTCAGTATTTCGGAGGCGGCTTCCCTGGTCCCGATGAAGAGTTTAAAATGGCTCAGGAATACTTTAAACCTACCAAAGGTGGTGTTCTAGTGGATGTAAGCTGTGGGAGTGGTATGTTTGCGAGGAAATTTGCCAAATCCGGAACCTATTCTGGAGTTGTTGCACTTGATTTTTCCGAAAATATGCTCCGCCAGTGCTATGGTTTCGTGACAAGAGACCCTACTACTCTTTTAGCTGCGAATCTTGCTCTCGTAAGGGCAGATGTTTCTAGGCTTCCATTTGCATCAGGTTCAGTTGATGCTGTACATGCCGGAGCAGCATTGCAGTGCTGGCCCTCTCCTTCCAATGCTGTTGCTAAAATCACTCGTATATTAAGAAGTGGTGGAATCTTTGTTGGAGCCACTTTTCTGCGACAACACCCGACTACTTTGATTACTGAATATGCCATAGCAGCACAGAGGATCCATCAAACCAATACCTATTTGACGGAGGAAGAGCTTGAGGACTTATGTACATCGTGCGGTCTCACCAATTACTCGGTCAAAGTTCAGCAATCTTTCATCATGTTTTCTGCTCAGAAACTATTAGTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

290

Amino Acids

32.14

Weight (kDa)

8.87

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	115 - 240	1.4e-10	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	116 - 272	1.6e-09	Methyltransferase domain
Methyltransf_31	PF13847	117 - 255	7.6e-12	Methyltransferase domain
Methyltransf_11	PF08241	123 - 224	9.6e-19	Methyltransferase domain
Methyltransf_25	PF13649	123 - 221	8.1e-15	Methyltransferase domain
Methyltransf_12	PF08242	123 - 223	2.6e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41040
fragaria_vesca	FvH4_1g01890 FvH4_1g01891 FvH4_1g01891 FvH4_1g01891
malus_domestica	MD02G1016900.v1.1 MD15G1161300.v1.1 MD15G1161400.v1.1
prunus_persica	Prupe.7G256500_v2.0.a1
pyrus_communis	pycom02g01520 pycom15g14510
rosa_chinensis	RchiOBHm_Chr2g0086891 RchiOBHm_Chr2g0086901
rosa_laevigata	RLG00000015811 RLG00000015812 RLG00000015813 RLG00000015814
rosa_multiflora	Rmu_sc0009060.1_g000008 Rmu_sc0009060.1_g000009 Rmu_sc0009188.1_g000001 Rmu_sc0009188.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154040 Rroxscaffold_2G00154050
rosa_rugosa	Rorug01G0470400 Rorug01G0470500
rosa_samantha	Rh2AG023200 Rh2AG023300 Rh2BG023700 Rh2BG023900 Rh2BG024000 Rh2CG024000 Rh2CG024100 Rh2CG024200 Rh2DG023600 Rh2DG024000 Rh2DG024100
rosa_wichuraiana	Rw2G001820 Rw2G001830 Rw2G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	4 cut(s)	65, 294, 466, 798
AclWI	GGATC	3 cut(s)	180, 733, 746
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	220
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	2 cut(s)	582, 790
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	4 cut(s)	125, 153, 196, 209
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	6 cut(s)	24, 37, 221, 378, 512, 775
AluI	AGCT	6 cut(s)	24, 37, 221, 378, 512, 775
Alw26I	GTCTC	4 cut(s)	95, 235, 486, 806
AlwI	GGATC	3 cut(s)	180, 733, 746
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	3 cut(s)	3, 79, 608
ApeKI	GCWGC	3 cut(s)	512, 593, 728
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	80, 305, 609
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	796
AsuII	TTCGAA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	738
BbvI	GCAGC	3 cut(s)	499, 605, 740
BccI	CCATC	1 cut(s)	750
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	4 cut(s)	95, 235, 486, 806
BfaI	CTAG	2 cut(s)	365, 546
BisI	GCNGC	4 cut(s)	295, 513, 594, 729
BlsI	GCNGC	4 cut(s)	296, 514, 595, 730
Bme1390I	CCNGG	2 cut(s)	50, 303
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	3 cut(s)	80, 305, 609
BmiI	GGNNCC	4 cut(s)	307, 421, 676, 740
BmrFI	CCNGG	2 cut(s)	50, 303
BmsI	GCATC	2 cut(s)	565, 569
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	277
BsaI	GGTCTC	4 cut(s)	95, 235, 486, 806
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	91, 469
Bse3DI	GCAATG	1 cut(s)	596
BseAI	TCCGGA	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	596
BseMII	CTCAG	3 cut(s)	219, 344, 866
BseNI	ACTGG	2 cut(s)	91, 469
BseXI	GCAGC	3 cut(s)	499, 605, 740
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	3 cut(s)	5, 81, 610
BsiSI	CCGG	3 cut(s)	50, 417, 588
BslFI	GGGAC	2 cut(s)	238, 291
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	4 cut(s)	95, 235, 486, 806
BsmFI	GGGAC	2 cut(s)	238, 291
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	5, 81, 610
Bso31I	GGTCTC	4 cut(s)	95, 235, 486, 806
Bsp119I	TTCGAA	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	416
Bsp1407I	TGTACA	2 cut(s)	580, 788
Bsp143I	GATC	2 cut(s)	172, 738
BspACI	CCGC	4 cut(s)	65, 294, 466, 798
BspANI	GGCC	3 cut(s)	5, 81, 610
BspCNI	CTCAG	3 cut(s)	220, 343, 865
BspEI	TCCGGA	1 cut(s)	416
BspLI	GGNNCC	4 cut(s)	307, 421, 676, 740
BspPI	GGATC	3 cut(s)	180, 733, 746
BspQI	GCTCTTC	1 cut(s)	765
BspT104I	TTCGAA	1 cut(s)	73
BspTNI	GGTCTC	4 cut(s)	95, 235, 486, 806
BsrDI	GCAATG	1 cut(s)	596
BsrGI	TGTACA	2 cut(s)	580, 788
BsrI	ACTGG	2 cut(s)	91, 469
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	172, 738
BssNI	GRCGYC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	309, 765
BstACI	GRCGYC	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstAUI	TGTACA	2 cut(s)	580, 788
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	102, 190, 608
BstDEI	CTNAG	4 cut(s)	9, 228, 330, 852
BstENI	CCTNNNNNAGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	2 cut(s)	175, 741
BstMAI	GTCTC	4 cut(s)	95, 235, 486, 806
BstMBI	GATC	2 cut(s)	172, 738
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 135, 521, 584, 593, 607, 728
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	48, 301
BstV1I	GCAGC	3 cut(s)	499, 605, 740
BstX2I	RGATCY	2 cut(s)	172, 738
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	2 cut(s)	172, 738
BsuRI	GGCC	3 cut(s)	5, 81, 610
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	2 cut(s)	476, 608
Cac8I	GCNNGC	3 cut(s)	102, 190, 608
Cfr13I	GGNCC	3 cut(s)	80, 305, 609
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	581, 789
CviAII	CATG	3 cut(s)	45, 584, 841
CviQI	GTAC	2 cut(s)	581, 789
DdeI	CTNAG	4 cut(s)	9, 228, 330, 852
DpnI	GATC	2 cut(s)	174, 740
DpnII	GATC	2 cut(s)	172, 738
DraI	TTTAAA	2 cut(s)	322, 343
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	309, 765
EarI	CTCTTC	2 cut(s)	309, 765
EciI	GGCGGA	1 cut(s)	455
Eco31I	GGTCTC	4 cut(s)	95, 235, 486, 806
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	3 cut(s)	48, 587, 844
FaqI	GGGAC	2 cut(s)	238, 291
FatI	CATG	3 cut(s)	44, 583, 840
Fnu4HI	GCNGC	4 cut(s)	295, 513, 594, 729
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	295, 513, 594, 729
FspBI	CTAG	2 cut(s)	365, 546
GluI	GCNGC	4 cut(s)	295, 513, 594, 729
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	5, 81, 610
HapII	CCGG	3 cut(s)	50, 417, 588
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	3 cut(s)	48, 587, 844
HinfI	GANTC	2 cut(s)	517, 663
HpaII	CCGG	3 cut(s)	50, 417, 588
HphI	GGTGA	1 cut(s)	796
Hpy188I	TCNGA	3 cut(s)	290, 454, 855
Hpy188III	TCNNGA	6 cut(s)	238, 308, 332, 417, 429, 484
HpyAV	CCTTC	2 cut(s)	265, 627
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	100, 129, 440, 560, 601
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 135, 521, 584, 593, 607, 728
HpyF3I	CTNAG	4 cut(s)	9, 228, 330, 852
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	3 cut(s)	48, 587, 844
Kpn2I	TCCGGA	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	172, 738
LguI	GCTCTTC	1 cut(s)	765
LmnI	GCTCC	4 cut(s)	34, 468, 590, 674
Lsp1109I	GCAGC	3 cut(s)	499, 605, 740
LweI	GCATC	2 cut(s)	565, 569
MaeI	CTAG	2 cut(s)	365, 546
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	181, 484
MalI	GATC	2 cut(s)	174, 740
MboI	GATC	2 cut(s)	172, 738
MboII	GAAGA	4 cut(s)	208, 226, 326, 782
MflI	RGATCY	2 cut(s)	172, 738
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	69, 404, 808
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	7 cut(s)	263, 284, 393, 622, 729, 760, 772
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	321, 342, 650, 867
MslI	CAYNNNNRTG	1 cut(s)	601
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	3 cut(s)	50, 417, 588
MspR9I	CCNGG	2 cut(s)	50, 303
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	7 cut(s)	54, 135, 521, 584, 593, 607, 728
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	2 cut(s)	172, 738
NlaIII	CATG	3 cut(s)	48, 587, 844
NlaIV	GGNNCC	4 cut(s)	307, 421, 676, 740
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	587
NspV	TTCGAA	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	765
PctI	GAATGC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	517, 663
PkrI	GCNGC	4 cut(s)	296, 514, 595, 730
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	4 cut(s)	307, 421, 676, 740
PspPI	GGNCC	3 cut(s)	80, 305, 609
PsuI	RGATCY	2 cut(s)	172, 738
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	582, 790
RsaNI	GTAC	2 cut(s)	581, 789
RseI	CAYNNNNRTG	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	765
SaqAI	TTAA	4 cut(s)	321, 342, 650, 867
SatI	GCNGC	4 cut(s)	295, 513, 594, 729
Sau3AI	GATC	2 cut(s)	172, 738
Sau96I	GGNCC	3 cut(s)	80, 305, 609
ScrFI	CCNGG	2 cut(s)	50, 303
SfaNI	GCATC	2 cut(s)	565, 569
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	3 cut(s)	69, 404, 808
SsiI	CCGC	4 cut(s)	65, 294, 466, 798
SspMI	CTAG	2 cut(s)	365, 546
StyD4I	CCNGG	2 cut(s)	48, 301
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	73
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	3 cut(s)	69, 404, 808
TatI	WGTACW	2 cut(s)	580, 788
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	517, 663
Tru1I	TTAA	4 cut(s)	321, 342, 650, 867
Tru9I	TTAA	4 cut(s)	321, 342, 650, 867
TscAI	CASTG	2 cut(s)	476, 608
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	3 cut(s)	512, 593, 728
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	4 cut(s)	75, 247, 327, 826
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	2 cut(s)	476, 608
VpaK11BI	GGWCC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	351
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	365, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.