Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002821

Physical Location & Seq

Genomic Coordinates Reverse (-)

90738403 .. 90741392

Gene Structure 2990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTCCCTCATCTGTCAATGAATCGAAGCAGAGCTCAAGGACTGATGAGAGTCAAAGCTCGGAGATTGAGTTGTTATCCTGCCCGGTATGCTATGAACCACTAATACGAAAAGGCCCACCTGGTCTAATCCTGCAAGCAATATGCAAGTCATCGTTCGACTGCAAGAAATGCTACAAGTCGTATTCCAGTGAACACACCTACTTGGATCTCACTGTTACTGCTGGATTGAAGAAGTACGTTGAAGTTAAACCAGTTGGCACTGAGTTATTCAGGAGGTCCTTCATGTCCTTTATTTATGAAAAAGGTTATCGTCAGTATTTTAAACGATATGGCTTCCCAGGTCCTGATGAAGAATTTAAAATGGCTCAGGACTACTTTAAATCCACTGAAGGTGGTGTTCTAGTGGATGTTAGCTGTGGGAGTGGTTTGTTCGCGATAAGATTCGCCAAATCTGGGACCTATTCAGGAGTTGTGGCACTTGATTTTTCTGAAAATATGCTTCTCCAGTGCTATGATTATCTTATGAGAGACCCTACTAATTTTTTGGCTACTGATCTCGTTCTTGTGAGGGCCGATGTTTCTAGGCTTCCATTCACATCATGTTCAGTTGATGCTGTCCATGCTGGCGCTGCATTGCACTGTTGGCCATCTCCTTCCAACGCTGTTGCTGAAATCACTCGTGTATTACGAAGTGGTGGCATCTTTGTCGGAACCACTTTTCTGCGGTCTAGCCCTTCAAGTACTTCCTGGATATTCAAACCACTCAATGAGAGGGTTCTTCCCAGCGGGAATTATTTTAGGGAGGAAGAGATTGAGGACTTGTGTACATCATGCGGTCTCACAAACTACTCGAGCAAAGTTGAGCAATCTTTCATCATCTTTTCTGCTCAGAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

300

Amino Acids

33.43

Weight (kDa)

6.35

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	126 - 262	3.5e-11	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	130 - 285	2e-07	Methyltransferase domain
Methyltransf_31	PF13847	131 - 242	1e-10	Methyltransferase domain
Methyltransf_11	PF08241	136 - 237	4.1e-18	Methyltransferase domain
Methyltransf_25	PF13649	136 - 234	2.3e-14	Methyltransferase domain
Methyltransf_12	PF08242	136 - 236	1e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41040
fragaria_vesca	FvH4_1g01890 FvH4_1g01891 FvH4_1g01891 FvH4_1g01891
malus_domestica	MD02G1016900.v1.1 MD15G1161300.v1.1 MD15G1161400.v1.1
prunus_persica	Prupe.7G256500_v2.0.a1
pyrus_communis	pycom02g01520 pycom15g14510
rosa_chinensis	RchiOBHm_Chr2g0086891 RchiOBHm_Chr2g0086901
rosa_laevigata	RLG00000015811 RLG00000015812 RLG00000015813 RLG00000015814
rosa_multiflora	Rmu_sc0009060.1_g000008 Rmu_sc0009060.1_g000009 Rmu_sc0009188.1_g000001 Rmu_sc0009188.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154040 Rroxscaffold_2G00154050
rosa_rugosa	Rorug01G0470400 Rorug01G0470500
rosa_samantha	Rh2AG023200 Rh2AG023300 Rh2BG023700 Rh2BG023900 Rh2BG024000 Rh2CG024000 Rh2CG024100 Rh2CG024200 Rh2DG023600 Rh2DG024000 Rh2DG024100
rosa_wichuraiana	Rw2G001820 Rw2G001830 Rw2G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	437
AciI	CCGC	3 cut(s)	727, 789, 837
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	3 cut(s)	239, 745, 829
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgsI	TTSAA	4 cut(s)	232, 245, 741, 760
AjnI	CCWGG	3 cut(s)	121, 340, 749
AluBI	AGCT	3 cut(s)	36, 60, 417
AluI	AGCT	3 cut(s)	36, 60, 417
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	525, 845
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	853
AoxI	GGCC	3 cut(s)	115, 573, 647
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	5 cut(s)	116, 279, 344, 459, 573
AsuC2I	CCSGG	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	853
AvaII	GGWCC	3 cut(s)	279, 344, 459
BalI	TGGCCA	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	1 cut(s)	658
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	3 cut(s)	123, 342, 751
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	525, 845
BfaI	CTAG	3 cut(s)	404, 585, 732
BfoI	RGCGCY	1 cut(s)	633
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	4 cut(s)	86, 123, 342, 751
Bme18I	GGWCC	3 cut(s)	279, 344, 459
BmeT110I	CYCGRG	1 cut(s)	853
BmgT120I	GGNCC	5 cut(s)	116, 279, 344, 459, 573
BmiI	GGNNCC	3 cut(s)	6, 460, 715
BmrFI	CCNGG	4 cut(s)	86, 123, 342, 751
BmsI	GCATC	2 cut(s)	604, 711
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	86
BsaI	GGTCTC	2 cut(s)	525, 845
BsaJI	CCNNGG	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse1I	ACTGG	3 cut(s)	189, 254, 508
Bse3DI	GCAATG	1 cut(s)	635
BseBI	CCWGG	3 cut(s)	123, 342, 751
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	255, 383
BseNI	ACTGG	3 cut(s)	189, 254, 508
BseXI	GCAGC	1 cut(s)	619
BseYI	CCCAGC	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	3 cut(s)	117, 575, 649
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	853
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	2 cut(s)	525, 845
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	117, 575, 649
Bso31I	GGTCTC	2 cut(s)	525, 845
BsoBI	CYCGRG	1 cut(s)	853
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	827
Bsp143I	GATC	2 cut(s)	208, 556
Bsp68I	TCGCGA	1 cut(s)	437
BspACI	CCGC	3 cut(s)	727, 789, 837
BspANI	GGCC	3 cut(s)	117, 575, 649
BspCNI	CTCAG	2 cut(s)	256, 382
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	3 cut(s)	6, 460, 715
BspPI	GGATC	1 cut(s)	216
BspTNI	GGTCTC	2 cut(s)	525, 845
BsrDI	GCAATG	1 cut(s)	635
BsrGI	TGTACA	1 cut(s)	827
BsrI	ACTGG	3 cut(s)	189, 254, 508
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	208, 556
BssSI	CACGAG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	3 cut(s)	123, 342, 751
Bst4CI	ACNGT	2 cut(s)	217, 644
Bst6I	CTCTTC	1 cut(s)	804
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	827
BstC8I	GCNNGC	2 cut(s)	138, 628
BstDEI	CTNAG	3 cut(s)	264, 369, 891
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	2 cut(s)	211, 559
BstMAI	GTCTC	2 cut(s)	525, 845
BstMBI	GATC	2 cut(s)	208, 556
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 171, 623, 632, 646
BstNI	CCWGG	3 cut(s)	123, 342, 751
BstSCI	CCNGG	4 cut(s)	84, 121, 340, 749
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	619
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	117, 575, 649
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	6 cut(s)	196, 213, 261, 387, 515, 640
BtuMI	TCGCGA	1 cut(s)	437
Cac8I	GCNNGC	2 cut(s)	138, 628
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	632
Cfr13I	GGNCC	5 cut(s)	116, 279, 344, 459, 573
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	238, 744, 828
CviAII	CATG	4 cut(s)	286, 603, 623, 834
CviQI	GTAC	3 cut(s)	238, 744, 828
DdeI	CTNAG	3 cut(s)	264, 369, 891
DpnI	GATC	2 cut(s)	210, 558
DpnII	GATC	2 cut(s)	208, 556
DraI	TTTAAA	3 cut(s)	325, 361, 382
EaeI	YGGCCR	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	2 cut(s)	525, 845
Eco47I	GGWCC	3 cut(s)	279, 344, 459
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	853
EcoICRI	GAGCTC	1 cut(s)	36
EcoO109I	RGGNCCY	3 cut(s)	279, 344, 459
EcoRII	CCWGG	3 cut(s)	121, 340, 749
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	4 cut(s)	289, 606, 626, 837
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	285, 602, 622, 833
FauI	CCCGC	1 cut(s)	782
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	3 cut(s)	404, 585, 732
GlaI	GCGC	1 cut(s)	631
GluI	GCNGC	1 cut(s)	633
GsaI	CCCAGC	1 cut(s)	789
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	633
HaeIII	GGCC	3 cut(s)	117, 575, 649
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	632
Hin1II	CATG	4 cut(s)	289, 606, 626, 837
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HinfI	GANTC	3 cut(s)	23, 52, 444
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	194, 828
Hpy188I	TCNGA	4 cut(s)	64, 493, 713, 894
Hpy188III	TCNNGA	5 cut(s)	274, 347, 371, 436, 468
Hpy8I	GTNNAC	2 cut(s)	194, 828
HpyAV	CCTTC	4 cut(s)	292, 386, 666, 747
HpyCH4III	ACNGT	2 cut(s)	217, 644
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	5 cut(s)	136, 147, 165, 635, 640
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 171, 623, 632, 646
HpyF3I	CTNAG	3 cut(s)	264, 369, 891
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	289, 606, 626, 837
HspAI	GCGC	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	208, 556
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	2 cut(s)	604, 711
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	3 cut(s)	404, 585, 732
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	210, 558
MboI	GATC	2 cut(s)	208, 556
MboII	GAAGA	4 cut(s)	244, 365, 773, 821
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	649
MluCI	AATT	3 cut(s)	356, 541, 793
MluNI	TGGCCA	1 cut(s)	649
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	684, 691
MnlI	CCTC	6 cut(s)	19, 270, 564, 768, 799, 811
Mox20I	TGGCCA	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	649
MseI	TTAA	4 cut(s)	249, 324, 360, 381
Msp20I	TGGCCA	1 cut(s)	649
MspA1I	CMGCKG	1 cut(s)	789
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	4 cut(s)	86, 123, 342, 751
MvaI	CCWGG	3 cut(s)	123, 342, 751
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	5 cut(s)	90, 171, 623, 632, 646
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	2 cut(s)	208, 556
NlaIII	CATG	4 cut(s)	289, 606, 626, 837
NlaIV	GGNNCC	3 cut(s)	6, 460, 715
NruI	TCGCGA	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	688
PfeI	GAWTC	2 cut(s)	23, 444
PfoI	TCCNGGA	1 cut(s)	749
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PpuMI	RGGWCCY	3 cut(s)	279, 344, 459
Psp124BI	GAGCTC	1 cut(s)	38
Psp5II	RGGWCCY	3 cut(s)	279, 344, 459
Psp6I	CCWGG	3 cut(s)	121, 340, 749
PspFI	CCCAGC	1 cut(s)	785
PspGI	CCWGG	3 cut(s)	121, 340, 749
PspN4I	GGNNCC	3 cut(s)	6, 460, 715
PspPI	GGNCC	5 cut(s)	116, 279, 344, 459, 573
PspPPI	RGGWCCY	3 cut(s)	279, 344, 459
PspXI	VCTCGAGB	1 cut(s)	853
PsrI	GAACNNNNNNTAC	2 cut(s)	90, 122
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	208
RruI	TCGCGA	1 cut(s)	437
RsaI	GTAC	3 cut(s)	239, 745, 829
RsaNI	GTAC	3 cut(s)	238, 744, 828
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	249, 324, 360, 381
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	2 cut(s)	208, 556
Sau96I	GGNCC	5 cut(s)	116, 279, 344, 459, 573
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	4 cut(s)	86, 123, 342, 751
SduI	GDGCHC	1 cut(s)	38
SexAI	ACCWGGT	1 cut(s)	121
SfaNI	GCATC	2 cut(s)	604, 711
Sfr274I	CTCGAG	1 cut(s)	853
SinI	GGWCC	3 cut(s)	279, 344, 459
SlaI	CTCGAG	1 cut(s)	853
SmlI	CTYRAG	2 cut(s)	37, 853
SmoI	CTYRAG	2 cut(s)	37, 853
Sse9I	AATT	3 cut(s)	356, 541, 793
SsiI	CCGC	3 cut(s)	727, 789, 837
SspMI	CTAG	3 cut(s)	404, 585, 732
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	4 cut(s)	84, 121, 340, 749
TaaI	ACNGT	2 cut(s)	217, 644
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	26, 159, 854
TasI	AATT	3 cut(s)	356, 541, 793
TatI	WGTACW	2 cut(s)	743, 827
TfiI	GAWTC	2 cut(s)	23, 444
Tru1I	TTAA	4 cut(s)	249, 324, 360, 381
Tru9I	TTAA	4 cut(s)	249, 324, 360, 381
TscAI	CASTG	6 cut(s)	196, 220, 268, 394, 515, 647
TseI	GCWGC	1 cut(s)	632
TspDTI	ATGAA	6 cut(s)	36, 111, 274, 315, 366, 865
TspRI	CASTG	6 cut(s)	196, 220, 268, 394, 515, 647
VpaK11BI	GGWCC	3 cut(s)	279, 344, 459
XapI	RAATTY	1 cut(s)	356
XhoI	CTCGAG	1 cut(s)	853
XspI	CTAG	3 cut(s)	404, 585, 732
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.