Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002821

Physical Location & Seq

Genomic Coordinates Forward (+)

985062 .. 987065

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTGATGGCTCCCTCATCTCTCAACGAATCGAGCGCAGAAGTTGAGTTGTTATCCTGCCCGGTTTGCTATGAACCACTAACACGAGTAGGCCCTCCTGGTCTAATCCTGCAAGCAATTTGCAGGTCATCGTTCGAGTGCAAGAAATGCTACAAGTCTTATTCCAGTAAAAAGAACTACTTGGATCTCACTGTTACTGCTGGATTGAAGAAGTACGTTGAAGCGAAACCAATTGGGACTGAGCTATTTAGGAGTATTATCATGTCATTCATCTATGAAAAGGGTTATCGTCAGTGTTTCAAACGATATGGCTTCCCTGGTCCTGATGAAGAATTTAAAATGGCTCAGGACTACTTTAAATCCGCTGAAGGCGGTGTTTTAGTGGATGTTAGCTGTGGGAGTGGTTTGTTCGCGATAAGATTCGCCAAATCTGGGACATATTCTGGAGTTGTGGCACTTGATTTTTCTGAAAATATGCTTCTCCAGTGCTATGATTATCTTATGAGAGACCCTGATACTCCTTTGGCTACTGATCTCGTTCTTGTGAGGGCCGATGCTTCTAGGCTTCCATTCACATCATGTTCAGTTGATGCTGTCCATGCCGGCGCTGCATTGCACTGCTGGCCATCTCCTTCTAATGCTGTTGCTGAAATCACTCGTGTATTACGAAGTGGTGGCATCTTTGTTGGAACCACATTTCTGCGGTCTAGTCCTTCCTGGATATTCAAGCCACTCAATGAGAGGATTCTTCCCAGCGGGAACTATTTTACGGAGGAAGAAATTGAGGACTTGTGTACATCATGCGGTCTCACAAACTACACGAGCAAAGTTGAGCAATCTTTCATCATCTTTTCTGCTAAAAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

290

Amino Acids

31.94

Weight (kDa)

6.2

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	119 - 232	3.9e-11	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	121 - 273	1.4e-06	Methyltransferase domain
Methyltransf_31	PF13847	124 - 234	9.4e-10	Methyltransferase domain
Methyltransf_11	PF08241	128 - 229	3.1e-18	Methyltransferase domain
Methyltransf_25	PF13649	128 - 226	1.9e-14	Methyltransferase domain
Methyltransf_12	PF08242	128 - 228	6.4e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41040
fragaria_vesca	FvH4_1g01890 FvH4_1g01891 FvH4_1g01891 FvH4_1g01891
malus_domestica	MD02G1016900.v1.1 MD15G1161300.v1.1 MD15G1161400.v1.1
prunus_persica	Prupe.7G256500_v2.0.a1
pyrus_communis	pycom02g01520 pycom15g14510
rosa_chinensis	RchiOBHm_Chr2g0086891 RchiOBHm_Chr2g0086901
rosa_laevigata	RLG00000015811 RLG00000015812 RLG00000015813 RLG00000015814
rosa_multiflora	Rmu_sc0009060.1_g000008 Rmu_sc0009060.1_g000009 Rmu_sc0009188.1_g000001 Rmu_sc0009188.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154040 Rroxscaffold_2G00154050
rosa_rugosa	Rorug01G0470400 Rorug01G0470500
rosa_samantha	Rh2AG023200 Rh2AG023300 Rh2BG023700 Rh2BG023900 Rh2BG024000 Rh2CG024000 Rh2CG024100 Rh2CG024200 Rh2DG023600 Rh2DG024000 Rh2DG024100
rosa_wichuraiana	Rw2G001820 Rw2G001830 Rw2G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccII	CGCG	1 cut(s)	413
AciI	CCGC	5 cut(s)	363, 372, 703, 756, 804
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	215, 796
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	4 cut(s)	208, 221, 301, 727
AjnI	CCWGG	3 cut(s)	97, 316, 716
AluBI	AGCT	2 cut(s)	244, 393
AluI	AGCT	2 cut(s)	244, 393
Alw26I	GTCTC	2 cut(s)	501, 812
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	3 cut(s)	91, 549, 623
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	38, 608
AspS9I	GGNCC	3 cut(s)	92, 320, 549
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	625
BauI	CACGAG	3 cut(s)	84, 657, 820
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	1 cut(s)	634
BciT130I	CCWGG	3 cut(s)	99, 318, 718
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	501, 812
BfaI	CTAG	2 cut(s)	561, 708
BfoI	RGCGCY	1 cut(s)	609
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	610
Bme1390I	CCNGG	4 cut(s)	62, 99, 318, 718
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	3 cut(s)	92, 320, 549
BmiI	GGNNCC	2 cut(s)	12, 691
BmrFI	CCNGG	4 cut(s)	62, 99, 318, 718
BmsI	GCATC	3 cut(s)	544, 580, 687
BpmI	CTGGAG	2 cut(s)	465, 467
Bpu10I	CCTNAGC	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	2 cut(s)	501, 812
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	2 cut(s)	165, 484
Bse3DI	GCAATG	1 cut(s)	611
BseBI	CCWGG	3 cut(s)	99, 318, 718
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	2 cut(s)	231, 359
BseNI	ACTGG	2 cut(s)	165, 484
BseXI	GCAGC	1 cut(s)	595
BseYI	CCCAGC	1 cut(s)	752
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	3 cut(s)	93, 551, 625
BsiSI	CCGG	2 cut(s)	62, 603
BslFI	GGGAC	2 cut(s)	250, 448
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	2 cut(s)	501, 812
BsmFI	GGGAC	2 cut(s)	250, 448
BsnI	GGCC	3 cut(s)	93, 551, 625
Bso31I	GGTCTC	2 cut(s)	501, 812
Bsp1407I	TGTACA	1 cut(s)	794
Bsp143I	GATC	2 cut(s)	184, 532
Bsp68I	TCGCGA	1 cut(s)	413
BspACI	CCGC	5 cut(s)	363, 372, 703, 756, 804
BspANI	GGCC	3 cut(s)	93, 551, 625
BspCNI	CTCAG	2 cut(s)	232, 358
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	2 cut(s)	12, 691
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	2 cut(s)	501, 812
BsrDI	GCAATG	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	602
BsrGI	TGTACA	1 cut(s)	794
BsrI	ACTGG	2 cut(s)	165, 484
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	184, 532
BssSI	CACGAG	3 cut(s)	84, 657, 820
Bst2BI	CACGAG	3 cut(s)	84, 657, 820
Bst2UI	CCWGG	3 cut(s)	99, 318, 718
Bst4CI	ACNGT	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstAUI	TGTACA	1 cut(s)	794
BstC8I	GCNNGC	3 cut(s)	114, 604, 623
BstDEI	CTNAG	2 cut(s)	240, 345
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	413
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	2 cut(s)	38, 608
BstKTI	GATC	2 cut(s)	187, 535
BstMAI	GTCTC	2 cut(s)	501, 812
BstMBI	GATC	2 cut(s)	184, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 147, 599, 608, 622
BstNI	CCWGG	3 cut(s)	99, 318, 718
BstSCI	CCNGG	4 cut(s)	60, 97, 316, 716
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	595
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	93, 551, 625
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	4 cut(s)	189, 299, 491, 616
BtuMI	TCGCGA	1 cut(s)	413
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	3 cut(s)	114, 604, 623
CfoI	GCGC	2 cut(s)	38, 608
Cfr10I	RCCGGY	1 cut(s)	602
Cfr13I	GGNCC	3 cut(s)	92, 320, 549
Csp6I	GTAC	2 cut(s)	214, 795
CviAII	CATG	4 cut(s)	262, 579, 599, 801
CviQI	GTAC	2 cut(s)	214, 795
DdeI	CTNAG	2 cut(s)	240, 345
DpnI	GATC	2 cut(s)	186, 534
DpnII	GATC	2 cut(s)	184, 532
DraI	TTTAAA	2 cut(s)	337, 358
EaeI	YGGCCR	1 cut(s)	623
Eco31I	GGTCTC	2 cut(s)	501, 812
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	3 cut(s)	97, 316, 716
FaeI	CATG	4 cut(s)	265, 582, 602, 804
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	2 cut(s)	250, 448
FatI	CATG	4 cut(s)	261, 578, 598, 800
FauI	CCCGC	1 cut(s)	749
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	609
FspBI	CTAG	2 cut(s)	561, 708
GlaI	GCGC	2 cut(s)	37, 607
GluI	GCNGC	1 cut(s)	609
GsaI	CCCAGC	1 cut(s)	756
GsuI	CTGGAG	2 cut(s)	465, 467
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	93, 551, 625
HapII	CCGG	2 cut(s)	62, 603
HhaI	GCGC	2 cut(s)	38, 608
Hin1II	CATG	4 cut(s)	265, 582, 602, 804
Hin6I	GCGC	2 cut(s)	36, 606
HinP1I	GCGC	2 cut(s)	36, 606
HinfI	GANTC	3 cut(s)	29, 420, 745
HpaII	CCGG	2 cut(s)	62, 603
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	4 cut(s)	323, 347, 412, 444
Hpy8I	GTNNAC	1 cut(s)	795
HpyAV	CCTTC	3 cut(s)	362, 642, 723
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	5 cut(s)	112, 123, 141, 611, 616
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 147, 599, 608, 622
HpyF3I	CTNAG	2 cut(s)	240, 345
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	265, 582, 602, 804
HspAI	GCGC	2 cut(s)	36, 606
KroI	GCCGGC	1 cut(s)	602
KroNI	GCCGGC	1 cut(s)	604
Kzo9I	GATC	2 cut(s)	184, 532
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	3 cut(s)	544, 580, 687
MaeI	CTAG	2 cut(s)	561, 708
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	186, 534
MboI	GATC	2 cut(s)	184, 532
MboII	GAAGA	4 cut(s)	220, 341, 740, 788
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	625
MluCI	AATT	4 cut(s)	117, 231, 332, 780
MluNI	TGGCCA	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	6 cut(s)	25, 105, 540, 735, 766, 778
Mox20I	TGGCCA	1 cut(s)	625
MroNI	GCCGGC	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	625
MseI	TTAA	2 cut(s)	336, 357
Msp20I	TGGCCA	1 cut(s)	625
MspA1I	CMGCKG	2 cut(s)	365, 756
MspI	CCGG	2 cut(s)	62, 603
MspR9I	CCNGG	4 cut(s)	62, 99, 318, 718
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	3 cut(s)	99, 318, 718
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	5 cut(s)	66, 147, 599, 608, 622
NaeI	GCCGGC	1 cut(s)	604
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	184, 532
NgoMIV	GCCGGC	1 cut(s)	602
NlaIII	CATG	4 cut(s)	265, 582, 602, 804
NlaIV	GGNNCC	2 cut(s)	12, 691
NruI	TCGCGA	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	664
PdiI	GCCGGC	1 cut(s)	604
PfeI	GAWTC	3 cut(s)	29, 420, 745
PfoI	TCCNGGA	1 cut(s)	716
PkrI	GCNGC	1 cut(s)	610
Psp6I	CCWGG	3 cut(s)	97, 316, 716
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	3 cut(s)	97, 316, 716
PspN4I	GGNNCC	2 cut(s)	12, 691
PspPI	GGNCC	3 cut(s)	92, 320, 549
PsuI	RGATCY	1 cut(s)	184
RruI	TCGCGA	1 cut(s)	413
RsaI	GTAC	2 cut(s)	215, 796
RsaNI	GTAC	2 cut(s)	214, 795
SaqAI	TTAA	2 cut(s)	336, 357
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	2 cut(s)	184, 532
Sau96I	GGNCC	3 cut(s)	92, 320, 549
ScrFI	CCNGG	4 cut(s)	62, 99, 318, 718
SetI	ASST	5 cut(s)	128, 219, 246, 395, 868
SfaNI	GCATC	3 cut(s)	544, 580, 687
SinI	GGWCC	1 cut(s)	320
Sse9I	AATT	4 cut(s)	117, 231, 332, 780
SsiI	CCGC	5 cut(s)	363, 372, 703, 756, 804
SspMI	CTAG	2 cut(s)	561, 708
StyD4I	CCNGG	4 cut(s)	60, 97, 316, 716
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	32, 135
TasI	AATT	4 cut(s)	117, 231, 332, 780
TatI	WGTACW	1 cut(s)	794
TfiI	GAWTC	3 cut(s)	29, 420, 745
Tru1I	TTAA	2 cut(s)	336, 357
Tru9I	TTAA	2 cut(s)	336, 357
TscAI	CASTG	4 cut(s)	196, 299, 491, 623
TseI	GCWGC	1 cut(s)	608
TspDTI	ATGAA	5 cut(s)	87, 259, 291, 342, 832
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	4 cut(s)	196, 299, 491, 623
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	332
XspI	CTAG	2 cut(s)	561, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.