Polygalacturonase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41850 |
| fragaria_vesca | FvH4_2g20930 FvH4_2g20930 FvH4_6g23580 |
| malus_domestica | MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1 |
| prunus_persica | Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1 |
| pyrus_communis | pycom05g17960 pycom10g15530 pycom12g06230 |
| rosa_chinensis | RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311 |
| rosa_laevigata | RLG00000012502 RLG00000023383 |
| rosa_multiflora | Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550 |
| rosa_rugosa | Rorug03G0193400 Rorug06G0186800 Rorug06G0186900 |
| rosa_samantha | Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600 |
| rosa_wichuraiana | Rw3G021820 Rw6G025780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 108 |
| AccII | CGCG | 1 cut(s) | 1100 |
| AciI | CCGC | 6 cut(s) | 187, 405, 710, 849, 1098, 1100 |
| AclI | AACGTT | 3 cut(s) | 398, 675, 1166 |
| AclWI | GGATC | 2 cut(s) | 640, 823 |
| AcuI | CTGAAG | 1 cut(s) | 644 |
| AfaI | GTAC | 3 cut(s) | 13, 946, 1124 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 40, 186, 860, 1196 |
| AflII | CTTAAG | 1 cut(s) | 338 |
| AgsI | TTSAA | 9 cut(s) | 75, 118, 291, 350, 662, 809, 830, 897, 1013 |
| AjnI | CCWGG | 1 cut(s) | 975 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 762, 794 |
| AluBI | AGCT | 7 cut(s) | 71, 129, 224, 299, 554, 937, 1274 |
| AluI | AGCT | 7 cut(s) | 71, 129, 224, 299, 554, 937, 1274 |
| Alw26I | GTCTC | 3 cut(s) | 688, 769, 913 |
| AlwI | GGATC | 2 cut(s) | 640, 823 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 992 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 1176 |
| AspLEI | GCGC | 2 cut(s) | 706, 1148 |
| AspS9I | GGNCC | 4 cut(s) | 4, 359, 851, 1102 |
| AsuC2I | CCSGG | 2 cut(s) | 855, 1127 |
| AsuHPI | GGTGA | 2 cut(s) | 370, 640 |
| AsuNHI | GCTAGC | 1 cut(s) | 995 |
| AvaII | GGWCC | 3 cut(s) | 359, 851, 1102 |
| BanII | GRGCYC | 1 cut(s) | 46 |
| BbvI | GCAGC | 1 cut(s) | 1188 |
| BccI | CCATC | 7 cut(s) | 227, 452, 476, 722, 782, 920, 1018 |
| BceAI | ACGGC | 2 cut(s) | 529, 594 |
| BciT130I | CCWGG | 1 cut(s) | 977 |
| BcnI | CCSGG | 2 cut(s) | 855, 1127 |
| BcoDI | GTCTC | 3 cut(s) | 688, 769, 913 |
| BfaI | CTAG | 3 cut(s) | 311, 996, 1143 |
| BfmI | CTRYAG | 2 cut(s) | 1086, 1174 |
| BfrI | CTTAAG | 1 cut(s) | 338 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 578 |
| BisI | GCNGC | 1 cut(s) | 1177 |
| BlpI | GCTNAGC | 2 cut(s) | 555, 933 |
| BlsI | GCNGC | 1 cut(s) | 1178 |
| Bme1390I | CCNGG | 3 cut(s) | 855, 977, 1127 |
| Bme18I | GGWCC | 3 cut(s) | 359, 851, 1102 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 359, 851, 1102 |
| BmiI | GGNNCC | 2 cut(s) | 853, 878 |
| BmrFI | CCNGG | 3 cut(s) | 855, 977, 1127 |
| BmrI | ACTGGG | 1 cut(s) | 504 |
| BmsI | GCATC | 2 cut(s) | 416, 1157 |
| BmtI | GCTAGC | 1 cut(s) | 999 |
| BmuI | ACTGGG | 1 cut(s) | 504 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 555, 933 |
| BpuMI | CCSGG | 2 cut(s) | 855, 1127 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1049 |
| BsaI | GGTCTC | 1 cut(s) | 688 |
| BsaJI | CCNNGG | 4 cut(s) | 880, 976, 1098, 1195 |
| BsaWI | WCCGGW | 1 cut(s) | 941 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 40, 186, 860, 1196 |
| Bse1I | ACTGG | 2 cut(s) | 361, 499 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1049 |
| BseBI | CCWGG | 1 cut(s) | 977 |
| BseDI | CCNNGG | 4 cut(s) | 880, 976, 1098, 1195 |
| BseGI | GGATG | 1 cut(s) | 931 |
| BseJI | GATNNNNATC | 1 cut(s) | 1049 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 40, 186, 860, 1196 |
| BseMII | CTCAG | 2 cut(s) | 924, 1298 |
| BseNI | ACTGG | 2 cut(s) | 361, 499 |
| BseXI | GCAGC | 1 cut(s) | 1188 |
| Bsh1236I | CGCG | 1 cut(s) | 1100 |
| Bsh1285I | CGRYCG | 1 cut(s) | 422 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiEI | CGRYCG | 1 cut(s) | 422 |
| BsiSI | CCGG | 3 cut(s) | 855, 942, 1126 |
| BslFI | GGGAC | 2 cut(s) | 837, 1142 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 40, 186, 860, 1196 |
| BsmAI | GTCTC | 3 cut(s) | 688, 769, 913 |
| BsmFI | GGGAC | 2 cut(s) | 837, 1142 |
| BsmI | GAATGC | 1 cut(s) | 271 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bso31I | GGTCTC | 1 cut(s) | 688 |
| Bsp1286I | GDGCHC | 1 cut(s) | 46 |
| Bsp143I | GATC | 4 cut(s) | 419, 645, 815, 1044 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 555, 933 |
| BspACI | CCGC | 6 cut(s) | 187, 405, 710, 849, 1098, 1100 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 2 cut(s) | 923, 1297 |
| BspFNI | CGCG | 1 cut(s) | 1100 |
| BspLI | GGNNCC | 2 cut(s) | 853, 878 |
| BspMAI | CTGCAG | 1 cut(s) | 1178 |
| BspOI | GCTAGC | 1 cut(s) | 999 |
| BspPI | GGATC | 2 cut(s) | 640, 823 |
| BspTI | CTTAAG | 1 cut(s) | 338 |
| BspTNI | GGTCTC | 1 cut(s) | 688 |
| BsrI | ACTGG | 2 cut(s) | 361, 499 |
| BssECI | CCNNGG | 4 cut(s) | 880, 976, 1098, 1195 |
| BssMI | GATC | 4 cut(s) | 419, 645, 815, 1044 |
| BssT1I | CCWWGG | 2 cut(s) | 880, 1195 |
| Bst2UI | CCWGG | 1 cut(s) | 977 |
| Bst4CI | ACNGT | 5 cut(s) | 28, 202, 382, 863, 922 |
| Bst6I | CTCTTC | 1 cut(s) | 136 |
| BstAFI | CTTAAG | 1 cut(s) | 338 |
| BstC8I | GCNNGC | 3 cut(s) | 255, 708, 997 |
| BstDEI | CTNAG | 5 cut(s) | 555, 910, 933, 1284, 1299 |
| BstDSI | CCRYGG | 1 cut(s) | 1098 |
| BstF5I | GGATG | 1 cut(s) | 931 |
| BstFNI | CGCG | 1 cut(s) | 1100 |
| BstHHI | GCGC | 2 cut(s) | 706, 1148 |
| BstKTI | GATC | 4 cut(s) | 422, 648, 818, 1047 |
| BstMAI | GTCTC | 3 cut(s) | 688, 769, 913 |
| BstMBI | GATC | 4 cut(s) | 419, 645, 815, 1044 |
| BstMCI | CGRYCG | 1 cut(s) | 422 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 578, 795, 1074 |
| BstNI | CCWGG | 1 cut(s) | 977 |
| BstNSI | RCATGY | 1 cut(s) | 285 |
| BstSCI | CCNGG | 3 cut(s) | 853, 975, 1125 |
| BstSFI | CTRYAG | 2 cut(s) | 1086, 1174 |
| BstUI | CGCG | 1 cut(s) | 1100 |
| BstV1I | GCAGC | 1 cut(s) | 1188 |
| BstX2I | RGATCY | 1 cut(s) | 645 |
| BstYI | RGATCY | 1 cut(s) | 645 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgI | CCRYGG | 1 cut(s) | 1098 |
| BtgZI | GCGATG | 1 cut(s) | 804 |
| BtsCI | GGATG | 1 cut(s) | 931 |
| BtsIMutI | CAGTG | 2 cut(s) | 492, 1292 |
| Cac8I | GCNNGC | 3 cut(s) | 255, 708, 997 |
| CaiI | CAGNNNCTG | 1 cut(s) | 992 |
| CfoI | GCGC | 2 cut(s) | 706, 1148 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 359, 851, 1102 |
| Cfr42I | CCGCGG | 1 cut(s) | 1101 |
| Csp6I | GTAC | 3 cut(s) | 12, 945, 1123 |
| CviAII | CATG | 6 cut(s) | 60, 282, 363, 537, 561, 1191 |
| CviQI | GTAC | 3 cut(s) | 12, 945, 1123 |
| DdeI | CTNAG | 5 cut(s) | 555, 910, 933, 1284, 1299 |
| DpnI | GATC | 4 cut(s) | 421, 647, 817, 1046 |
| DpnII | GATC | 4 cut(s) | 419, 645, 815, 1044 |
| Eam1104I | CTCTTC | 1 cut(s) | 136 |
| EarI | CTCTTC | 1 cut(s) | 136 |
| Eco130I | CCWWGG | 2 cut(s) | 880, 1195 |
| Eco24I | GRGCYC | 1 cut(s) | 46 |
| Eco31I | GGTCTC | 1 cut(s) | 688 |
| Eco32I | GATATC | 1 cut(s) | 436 |
| Eco47I | GGWCC | 3 cut(s) | 359, 851, 1102 |
| Eco57I | CTGAAG | 1 cut(s) | 644 |
| EcoRII | CCWGG | 1 cut(s) | 975 |
| EcoRV | GATATC | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 2 cut(s) | 880, 1195 |
| EcoT38I | GRGCYC | 1 cut(s) | 46 |
| ErhI | CCWWGG | 2 cut(s) | 880, 1195 |
| FaeI | CATG | 6 cut(s) | 63, 285, 366, 540, 564, 1194 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 166, 198 |
| FaqI | GGGAC | 2 cut(s) | 837, 1142 |
| FatI | CATG | 6 cut(s) | 59, 281, 362, 536, 560, 1190 |
| Fnu4HI | GCNGC | 1 cut(s) | 1177 |
| FokI | GGATG | 1 cut(s) | 938 |
| FriOI | GRGCYC | 1 cut(s) | 46 |
| Fsp4HI | GCNGC | 1 cut(s) | 1177 |
| FspBI | CTAG | 3 cut(s) | 311, 996, 1143 |
| GlaI | GCGC | 2 cut(s) | 705, 1147 |
| GluI | GCNGC | 1 cut(s) | 1177 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 3 cut(s) | 855, 942, 1126 |
| HhaI | GCGC | 2 cut(s) | 706, 1148 |
| Hin1II | CATG | 6 cut(s) | 63, 285, 366, 540, 564, 1194 |
| Hin6I | GCGC | 2 cut(s) | 704, 1146 |
| HinP1I | GCGC | 2 cut(s) | 704, 1146 |
| HincII | GTYRAC | 1 cut(s) | 466 |
| HindII | GTYRAC | 1 cut(s) | 466 |
| HindIII | AAGCTT | 2 cut(s) | 69, 935 |
| HinfI | GANTC | 7 cut(s) | 78, 190, 619, 762, 770, 963, 1039 |
| HpaI | GTTAAC | 1 cut(s) | 466 |
| HpaII | CCGG | 3 cut(s) | 855, 942, 1126 |
| HphI | GGTGA | 2 cut(s) | 370, 640 |
| Hpy166II | GTNNAC | 4 cut(s) | 466, 505, 1123, 1219 |
| Hpy188III | TCNNGA | 4 cut(s) | 75, 262, 649, 987 |
| Hpy8I | GTNNAC | 4 cut(s) | 466, 505, 1123, 1219 |
| HpyAV | CCTTC | 1 cut(s) | 619 |
| HpyCH4III | ACNGT | 5 cut(s) | 28, 202, 382, 863, 922 |
| HpyCH4IV | ACGT | 5 cut(s) | 398, 521, 675, 1116, 1166 |
| HpyCH4V | TGCA | 9 cut(s) | 366, 540, 564, 638, 798, 1083, 1176, 1245, 1290 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 578, 795, 1074 |
| HpyF3I | CTNAG | 5 cut(s) | 555, 910, 933, 1284, 1299 |
| HpySE526I | ACGT | 5 cut(s) | 398, 521, 675, 1116, 1166 |
| Hsp92II | CATG | 6 cut(s) | 63, 285, 366, 540, 564, 1194 |
| HspAI | GCGC | 2 cut(s) | 704, 1146 |
| KspAI | GTTAAC | 1 cut(s) | 466 |
| KspI | CCGCGG | 1 cut(s) | 1101 |
| Kzo9I | GATC | 4 cut(s) | 419, 645, 815, 1044 |
| LmnI | GCTCC | 5 cut(s) | 221, 296, 674, 876, 1271 |
| Lsp1109I | GCAGC | 1 cut(s) | 1188 |
| LweI | GCATC | 2 cut(s) | 416, 1157 |
| MaeI | CTAG | 3 cut(s) | 311, 996, 1143 |
| MaeII | ACGT | 5 cut(s) | 398, 521, 675, 1116, 1166 |
| MaeIII | GTNAC | 4 cut(s) | 22, 697, 857, 916 |
| MalI | GATC | 4 cut(s) | 421, 647, 817, 1046 |
| MboI | GATC | 4 cut(s) | 419, 645, 815, 1044 |
| MboII | GAAGA | 5 cut(s) | 153, 279, 286, 628, 1123 |
| MflI | RGATCY | 1 cut(s) | 645 |
| MhlI | GDGCHC | 1 cut(s) | 46 |
| MluCI | AATT | 4 cut(s) | 350, 367, 892, 1200 |
| MlyI | GAGTC | 2 cut(s) | 184, 771 |
| MmeI | TCCRAC | 2 cut(s) | 218, 696 |
| MnlI | CCTC | 6 cut(s) | 139, 190, 479, 974, 1223, 1293 |
| MseI | TTAA | 8 cut(s) | 131, 303, 339, 353, 465, 1035, 1170, 1224 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1022 |
| MspA1I | CMGCKG | 1 cut(s) | 1100 |
| MspCI | CTTAAG | 1 cut(s) | 338 |
| MspI | CCGG | 3 cut(s) | 855, 942, 1126 |
| MspR9I | CCNGG | 3 cut(s) | 855, 977, 1127 |
| Mva1269I | GAATGC | 1 cut(s) | 271 |
| MvaI | CCWGG | 1 cut(s) | 977 |
| MvnI | CGCG | 1 cut(s) | 1100 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 578, 795, 1074 |
| NciI | CCSGG | 2 cut(s) | 855, 1127 |
| NdeII | GATC | 4 cut(s) | 419, 645, 815, 1044 |
| NheI | GCTAGC | 1 cut(s) | 995 |
| NlaIII | CATG | 6 cut(s) | 63, 285, 366, 540, 564, 1194 |
| NlaIV | GGNNCC | 2 cut(s) | 853, 878 |
| NmuCI | GTSAC | 2 cut(s) | 857, 916 |
| NspI | RCATGY | 1 cut(s) | 285 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 486, 513 |
| PctI | GAATGC | 1 cut(s) | 271 |
| PfeI | GAWTC | 5 cut(s) | 78, 619, 770, 963, 1039 |
| PkrI | GCNGC | 1 cut(s) | 1178 |
| Ple19I | CGATCG | 1 cut(s) | 422 |
| PleI | GAGTC | 2 cut(s) | 184, 770 |
| PpsI | GAGTC | 2 cut(s) | 184, 770 |
| PsiI | TTATAA | 1 cut(s) | 108 |
| Psp1406I | AACGTT | 3 cut(s) | 398, 675, 1166 |
| Psp6I | CCWGG | 1 cut(s) | 975 |
| PspGI | CCWGG | 1 cut(s) | 975 |
| PspN4I | GGNNCC | 2 cut(s) | 853, 878 |
| PspPI | GGNCC | 4 cut(s) | 4, 359, 851, 1102 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1106, 1138 |
| PstI | CTGCAG | 1 cut(s) | 1178 |
| PstNI | CAGNNNCTG | 1 cut(s) | 992 |
| PsuI | RGATCY | 1 cut(s) | 645 |
| PvuI | CGATCG | 1 cut(s) | 422 |
| RsaI | GTAC | 3 cut(s) | 13, 946, 1124 |
| RsaNI | GTAC | 3 cut(s) | 12, 945, 1123 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SacII | CCGCGG | 1 cut(s) | 1101 |
| SaqAI | TTAA | 8 cut(s) | 131, 303, 339, 353, 465, 1035, 1170, 1224 |
| SatI | GCNGC | 1 cut(s) | 1177 |
| Sau3AI | GATC | 4 cut(s) | 419, 645, 815, 1044 |
| Sau96I | GGNCC | 4 cut(s) | 4, 359, 851, 1102 |
| SchI | GAGTC | 2 cut(s) | 184, 771 |
| ScrFI | CCNGG | 3 cut(s) | 855, 977, 1127 |
| SduI | GDGCHC | 1 cut(s) | 46 |
| SfaNI | GCATC | 2 cut(s) | 416, 1157 |
| SfcI | CTRYAG | 2 cut(s) | 1086, 1174 |
| Sfr303I | CCGCGG | 1 cut(s) | 1101 |
| SgrBI | CCGCGG | 1 cut(s) | 1101 |
| SinI | GGWCC | 3 cut(s) | 359, 851, 1102 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SmlI | CTYRAG | 1 cut(s) | 338 |
| SmoI | CTYRAG | 1 cut(s) | 338 |
| Sse9I | AATT | 4 cut(s) | 350, 367, 892, 1200 |
| SsiI | CCGC | 6 cut(s) | 187, 405, 710, 849, 1098, 1100 |
| SspI | AATATT | 1 cut(s) | 1003 |
| SspMI | CTAG | 3 cut(s) | 311, 996, 1143 |
| StyD4I | CCNGG | 3 cut(s) | 853, 975, 1125 |
| StyI | CCWWGG | 2 cut(s) | 880, 1195 |
| TaaI | ACNGT | 5 cut(s) | 28, 202, 382, 863, 922 |
| TaiI | ACGT | 5 cut(s) | 401, 524, 678, 1119, 1169 |
| TaqI | TCGA | 5 cut(s) | 480, 599, 656, 760, 1053 |
| TasI | AATT | 4 cut(s) | 350, 367, 892, 1200 |
| TfiI | GAWTC | 5 cut(s) | 78, 619, 770, 963, 1039 |
| Tru1I | TTAA | 8 cut(s) | 131, 303, 339, 353, 465, 1035, 1170, 1224 |
| Tru9I | TTAA | 8 cut(s) | 131, 303, 339, 353, 465, 1035, 1170, 1224 |
| TscAI | CASTG | 2 cut(s) | 499, 1292 |
| TseFI | GTSAC | 2 cut(s) | 857, 916 |
| TseI | GCWGC | 1 cut(s) | 1176 |
| Tsp45I | GTSAC | 2 cut(s) | 857, 916 |
| TspDTI | ATGAA | 1 cut(s) | 725 |
| TspGWI | ACGGA | 2 cut(s) | 522, 559 |
| TspRI | CASTG | 2 cut(s) | 499, 1292 |
| Vha464I | CTTAAG | 1 cut(s) | 338 |
| VpaK11BI | GGWCC | 3 cut(s) | 359, 851, 1102 |
| XceI | RCATGY | 1 cut(s) | 285 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1255 |
| XspI | CTAG | 3 cut(s) | 311, 996, 1143 |