AT2G41850

Polygalacturonase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17461655 .. 17464242
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41850.1

Sequence Viewer

Length: 1302 bp
ATGGCCCGTTGTACCAACCTTGTTACCGTTTTCCTATTATGGGCTCTTTTGATGTTCTCATGGTGTAAAGCTTCAAGAATCAGCCCTAATGTATATGACCATTCTTATAAAAGGTTCAAATCCGATAGCTTAATCAAGCGAAGAGAGGACATCACGGGATTGAGAAGTTTTGTAAGAGCCTCTTTGCGGACTCCAACCACCGTTAGTGTTTCTGATTTTGGAGCTAAAGGAGATGGAAAAACCGATGACACGCAGGCGTTCGTGAATGCGTGGAAGAAAGCATGTTCTTCAAATGGAGCTGTTAATCTCCTAGTTCCTAAAGGGAATACTTATCTCCTTAAGTCTATTCAATTAACTGGTCCATGCAATTCTATTCTCACCGTTCAGATATTCGGAACGTTATCCGCATCTCAAAAACGATCGGATTACAAAGATATCAGCAAATGGATAATGTTTGATGGCGTTAACAATCTATCAGTCGATGGAGGCGACACTGGGGTTGTGGACGGAAACGGCGAAACGTGGTGGCAAAACTCATGCAAACGGAACAAAGCTAAGCCATGCACAAAAGCCCCAACGGCTCTTACTTTTTACAACTCGAAAAGTCTGATAGTGAAGAATCTGAAGGTGAGAAATGCACAGCAGATCCAGATTTCGATTGAAAAATGCTCCAACGTTCAGGTCTCTAATGTCGTGGTAACTGCGCCTGCGGATAGTCCTAACACCGATGGTATTCATATCACTAACACCCAAAACATTCGAGTCTCCGAATCCATCATTGGAACAGGCGATGATTGCATATCTATTGAAAGTGGATCACAAAATGTTCAAATCAATGATATAACTTGCGGTCCCGGTCACGGTATCAGTATTGGGAGCCTTGGAGATGACAATTCAAAGGCTTTTGTCTCAGGCGTGACTGTGGATGGTGCTAAGCTTTCCGGTACAGACAATGGAGTAAGAATCAAAACTTACCAGGGAGGGTCAGGAACTGCTAGCAATATTATATTTCAAAACATTCAGATGGATAATGTTAAGAATCCGATCATAATCGACCAAGACTACTGCGACAAGAGCAAATGCACTACAGAGAAATCCGCGGTCCAAGTGAAGAACGTGGTGTACCGGGACATAAGTGGCACTAGCGCATCGGAAAACGCAATAACGTTTAACTGCAGCAAGAACTATCCATGCCAAGGAATTGTGCTTGACAGAGTGAACATTAAAGGAGGAAAAGCAACTTGCACCAATGCTAATGTGGTTGATAAAGGAGCTGTTCTGCCTCAGTGCAACTCCACTTAG

Protein Analysis

433

Amino Acids

46.62

Weight (kDa)

8.98

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 68 - 115 7.4e-06 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 95 - 420 6.8e-105 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AccII CGCG 1 cut(s) 1100
AciI CCGC 6 cut(s) 187, 405, 710, 849, 1098, 1100
AclI AACGTT 3 cut(s) 398, 675, 1166
AclWI GGATC 2 cut(s) 640, 823
AcuI CTGAAG 1 cut(s) 644
AfaI GTAC 3 cut(s) 13, 946, 1124
AfiI CCNNNNNNNGG 4 cut(s) 40, 186, 860, 1196
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 9 cut(s) 75, 118, 291, 350, 662, 809, 830, 897, 1013
AjnI CCWGG 1 cut(s) 975
AjuI GAANNNNNNNTTGG 2 cut(s) 762, 794
AluBI AGCT 7 cut(s) 71, 129, 224, 299, 554, 937, 1274
AluI AGCT 7 cut(s) 71, 129, 224, 299, 554, 937, 1274
Alw26I GTCTC 3 cut(s) 688, 769, 913
AlwI GGATC 2 cut(s) 640, 823
AlwNI CAGNNNCTG 1 cut(s) 992
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 1176
AspLEI GCGC 2 cut(s) 706, 1148
AspS9I GGNCC 4 cut(s) 4, 359, 851, 1102
AsuC2I CCSGG 2 cut(s) 855, 1127
AsuHPI GGTGA 2 cut(s) 370, 640
AsuNHI GCTAGC 1 cut(s) 995
AvaII GGWCC 3 cut(s) 359, 851, 1102
BanII GRGCYC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 1188
BccI CCATC 7 cut(s) 227, 452, 476, 722, 782, 920, 1018
BceAI ACGGC 2 cut(s) 529, 594
BciT130I CCWGG 1 cut(s) 977
BcnI CCSGG 2 cut(s) 855, 1127
BcoDI GTCTC 3 cut(s) 688, 769, 913
BfaI CTAG 3 cut(s) 311, 996, 1143
BfmI CTRYAG 2 cut(s) 1086, 1174
BfrI CTTAAG 1 cut(s) 338
BglI GCCNNNNNGGC 1 cut(s) 578
BisI GCNGC 1 cut(s) 1177
BlpI GCTNAGC 2 cut(s) 555, 933
BlsI GCNGC 1 cut(s) 1178
Bme1390I CCNGG 3 cut(s) 855, 977, 1127
Bme18I GGWCC 3 cut(s) 359, 851, 1102
BmgT120I GGNCC 4 cut(s) 4, 359, 851, 1102
BmiI GGNNCC 2 cut(s) 853, 878
BmrFI CCNGG 3 cut(s) 855, 977, 1127
BmrI ACTGGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 416, 1157
BmtI GCTAGC 1 cut(s) 999
BmuI ACTGGG 1 cut(s) 504
Bpu1102I GCTNAGC 2 cut(s) 555, 933
BpuMI CCSGG 2 cut(s) 855, 1127
BsaBI GATNNNNATC 1 cut(s) 1049
BsaI GGTCTC 1 cut(s) 688
BsaJI CCNNGG 4 cut(s) 880, 976, 1098, 1195
BsaWI WCCGGW 1 cut(s) 941
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 186, 860, 1196
Bse1I ACTGG 2 cut(s) 361, 499
Bse8I GATNNNNATC 1 cut(s) 1049
BseBI CCWGG 1 cut(s) 977
BseDI CCNNGG 4 cut(s) 880, 976, 1098, 1195
BseGI GGATG 1 cut(s) 931
BseJI GATNNNNATC 1 cut(s) 1049
BseLI CCNNNNNNNGG 4 cut(s) 40, 186, 860, 1196
BseMII CTCAG 2 cut(s) 924, 1298
BseNI ACTGG 2 cut(s) 361, 499
BseXI GCAGC 1 cut(s) 1188
Bsh1236I CGCG 1 cut(s) 1100
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 422
BsiSI CCGG 3 cut(s) 855, 942, 1126
BslFI GGGAC 2 cut(s) 837, 1142
BslI CCNNNNNNNGG 4 cut(s) 40, 186, 860, 1196
BsmAI GTCTC 3 cut(s) 688, 769, 913
BsmFI GGGAC 2 cut(s) 837, 1142
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 688
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 4 cut(s) 419, 645, 815, 1044
Bsp1720I GCTNAGC 2 cut(s) 555, 933
BspACI CCGC 6 cut(s) 187, 405, 710, 849, 1098, 1100
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 923, 1297
BspFNI CGCG 1 cut(s) 1100
BspLI GGNNCC 2 cut(s) 853, 878
BspMAI CTGCAG 1 cut(s) 1178
BspOI GCTAGC 1 cut(s) 999
BspPI GGATC 2 cut(s) 640, 823
BspTI CTTAAG 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 688
BsrI ACTGG 2 cut(s) 361, 499
BssECI CCNNGG 4 cut(s) 880, 976, 1098, 1195
BssMI GATC 4 cut(s) 419, 645, 815, 1044
BssT1I CCWWGG 2 cut(s) 880, 1195
Bst2UI CCWGG 1 cut(s) 977
Bst4CI ACNGT 5 cut(s) 28, 202, 382, 863, 922
Bst6I CTCTTC 1 cut(s) 136
BstAFI CTTAAG 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 255, 708, 997
BstDEI CTNAG 5 cut(s) 555, 910, 933, 1284, 1299
BstDSI CCRYGG 1 cut(s) 1098
BstF5I GGATG 1 cut(s) 931
BstFNI CGCG 1 cut(s) 1100
BstHHI GCGC 2 cut(s) 706, 1148
BstKTI GATC 4 cut(s) 422, 648, 818, 1047
BstMAI GTCTC 3 cut(s) 688, 769, 913
BstMBI GATC 4 cut(s) 419, 645, 815, 1044
BstMCI CGRYCG 1 cut(s) 422
BstMWI GCNNNNNNNGC 3 cut(s) 578, 795, 1074
BstNI CCWGG 1 cut(s) 977
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 853, 975, 1125
BstSFI CTRYAG 2 cut(s) 1086, 1174
BstUI CGCG 1 cut(s) 1100
BstV1I GCAGC 1 cut(s) 1188
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 1098
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 1 cut(s) 931
BtsIMutI CAGTG 2 cut(s) 492, 1292
Cac8I GCNNGC 3 cut(s) 255, 708, 997
CaiI CAGNNNCTG 1 cut(s) 992
CfoI GCGC 2 cut(s) 706, 1148
Cfr13I GGNCC 4 cut(s) 4, 359, 851, 1102
Cfr42I CCGCGG 1 cut(s) 1101
Csp6I GTAC 3 cut(s) 12, 945, 1123
CviAII CATG 6 cut(s) 60, 282, 363, 537, 561, 1191
CviQI GTAC 3 cut(s) 12, 945, 1123
DdeI CTNAG 5 cut(s) 555, 910, 933, 1284, 1299
DpnI GATC 4 cut(s) 421, 647, 817, 1046
DpnII GATC 4 cut(s) 419, 645, 815, 1044
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 880, 1195
Eco24I GRGCYC 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 688
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 3 cut(s) 359, 851, 1102
Eco57I CTGAAG 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 975
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 880, 1195
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 880, 1195
FaeI CATG 6 cut(s) 63, 285, 366, 540, 564, 1194
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FaqI GGGAC 2 cut(s) 837, 1142
FatI CATG 6 cut(s) 59, 281, 362, 536, 560, 1190
Fnu4HI GCNGC 1 cut(s) 1177
FokI GGATG 1 cut(s) 938
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 1177
FspBI CTAG 3 cut(s) 311, 996, 1143
GlaI GCGC 2 cut(s) 705, 1147
GluI GCNGC 1 cut(s) 1177
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 855, 942, 1126
HhaI GCGC 2 cut(s) 706, 1148
Hin1II CATG 6 cut(s) 63, 285, 366, 540, 564, 1194
Hin6I GCGC 2 cut(s) 704, 1146
HinP1I GCGC 2 cut(s) 704, 1146
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 2 cut(s) 69, 935
HinfI GANTC 7 cut(s) 78, 190, 619, 762, 770, 963, 1039
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 3 cut(s) 855, 942, 1126
HphI GGTGA 2 cut(s) 370, 640
Hpy166II GTNNAC 4 cut(s) 466, 505, 1123, 1219
Hpy188III TCNNGA 4 cut(s) 75, 262, 649, 987
Hpy8I GTNNAC 4 cut(s) 466, 505, 1123, 1219
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 5 cut(s) 28, 202, 382, 863, 922
HpyCH4IV ACGT 5 cut(s) 398, 521, 675, 1116, 1166
HpyCH4V TGCA 9 cut(s) 366, 540, 564, 638, 798, 1083, 1176, 1245, 1290
HpyF10VI GCNNNNNNNGC 3 cut(s) 578, 795, 1074
HpyF3I CTNAG 5 cut(s) 555, 910, 933, 1284, 1299
HpySE526I ACGT 5 cut(s) 398, 521, 675, 1116, 1166
Hsp92II CATG 6 cut(s) 63, 285, 366, 540, 564, 1194
HspAI GCGC 2 cut(s) 704, 1146
KspAI GTTAAC 1 cut(s) 466
KspI CCGCGG 1 cut(s) 1101
Kzo9I GATC 4 cut(s) 419, 645, 815, 1044
LmnI GCTCC 5 cut(s) 221, 296, 674, 876, 1271
Lsp1109I GCAGC 1 cut(s) 1188
LweI GCATC 2 cut(s) 416, 1157
MaeI CTAG 3 cut(s) 311, 996, 1143
MaeII ACGT 5 cut(s) 398, 521, 675, 1116, 1166
MaeIII GTNAC 4 cut(s) 22, 697, 857, 916
MalI GATC 4 cut(s) 421, 647, 817, 1046
MboI GATC 4 cut(s) 419, 645, 815, 1044
MboII GAAGA 5 cut(s) 153, 279, 286, 628, 1123
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 350, 367, 892, 1200
MlyI GAGTC 2 cut(s) 184, 771
MmeI TCCRAC 2 cut(s) 218, 696
MnlI CCTC 6 cut(s) 139, 190, 479, 974, 1223, 1293
MseI TTAA 8 cut(s) 131, 303, 339, 353, 465, 1035, 1170, 1224
MslI CAYNNNNRTG 1 cut(s) 1022
MspA1I CMGCKG 1 cut(s) 1100
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 3 cut(s) 855, 942, 1126
MspR9I CCNGG 3 cut(s) 855, 977, 1127
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 977
MvnI CGCG 1 cut(s) 1100
MwoI GCNNNNNNNGC 3 cut(s) 578, 795, 1074
NciI CCSGG 2 cut(s) 855, 1127
NdeII GATC 4 cut(s) 419, 645, 815, 1044
NheI GCTAGC 1 cut(s) 995
NlaIII CATG 6 cut(s) 63, 285, 366, 540, 564, 1194
NlaIV GGNNCC 2 cut(s) 853, 878
NmuCI GTSAC 2 cut(s) 857, 916
NspI RCATGY 1 cut(s) 285
PcsI WCGNNNNNNNCGW 2 cut(s) 486, 513
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 5 cut(s) 78, 619, 770, 963, 1039
PkrI GCNGC 1 cut(s) 1178
Ple19I CGATCG 1 cut(s) 422
PleI GAGTC 2 cut(s) 184, 770
PpsI GAGTC 2 cut(s) 184, 770
PsiI TTATAA 1 cut(s) 108
Psp1406I AACGTT 3 cut(s) 398, 675, 1166
Psp6I CCWGG 1 cut(s) 975
PspGI CCWGG 1 cut(s) 975
PspN4I GGNNCC 2 cut(s) 853, 878
PspPI GGNCC 4 cut(s) 4, 359, 851, 1102
PsrI GAACNNNNNNTAC 2 cut(s) 1106, 1138
PstI CTGCAG 1 cut(s) 1178
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 645
PvuI CGATCG 1 cut(s) 422
RsaI GTAC 3 cut(s) 13, 946, 1124
RsaNI GTAC 3 cut(s) 12, 945, 1123
RseI CAYNNNNRTG 1 cut(s) 1022
SacII CCGCGG 1 cut(s) 1101
SaqAI TTAA 8 cut(s) 131, 303, 339, 353, 465, 1035, 1170, 1224
SatI GCNGC 1 cut(s) 1177
Sau3AI GATC 4 cut(s) 419, 645, 815, 1044
Sau96I GGNCC 4 cut(s) 4, 359, 851, 1102
SchI GAGTC 2 cut(s) 184, 771
ScrFI CCNGG 3 cut(s) 855, 977, 1127
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 416, 1157
SfcI CTRYAG 2 cut(s) 1086, 1174
Sfr303I CCGCGG 1 cut(s) 1101
SgrBI CCGCGG 1 cut(s) 1101
SinI GGWCC 3 cut(s) 359, 851, 1102
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 4 cut(s) 350, 367, 892, 1200
SsiI CCGC 6 cut(s) 187, 405, 710, 849, 1098, 1100
SspI AATATT 1 cut(s) 1003
SspMI CTAG 3 cut(s) 311, 996, 1143
StyD4I CCNGG 3 cut(s) 853, 975, 1125
StyI CCWWGG 2 cut(s) 880, 1195
TaaI ACNGT 5 cut(s) 28, 202, 382, 863, 922
TaiI ACGT 5 cut(s) 401, 524, 678, 1119, 1169
TaqI TCGA 5 cut(s) 480, 599, 656, 760, 1053
TasI AATT 4 cut(s) 350, 367, 892, 1200
TfiI GAWTC 5 cut(s) 78, 619, 770, 963, 1039
Tru1I TTAA 8 cut(s) 131, 303, 339, 353, 465, 1035, 1170, 1224
Tru9I TTAA 8 cut(s) 131, 303, 339, 353, 465, 1035, 1170, 1224
TscAI CASTG 2 cut(s) 499, 1292
TseFI GTSAC 2 cut(s) 857, 916
TseI GCWGC 1 cut(s) 1176
Tsp45I GTSAC 2 cut(s) 857, 916
TspDTI ATGAA 1 cut(s) 725
TspGWI ACGGA 2 cut(s) 522, 559
TspRI CASTG 2 cut(s) 499, 1292
Vha464I CTTAAG 1 cut(s) 338
VpaK11BI GGWCC 3 cut(s) 359, 851, 1102
XceI RCATGY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 1255
XspI CTAG 3 cut(s) 311, 996, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.