Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Reverse (-)

29608806 .. 29610588

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0186800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGAGGCTGGGGACAAGCTGTGACTGTTTGGTGCGGTCGAACCTCATCTAGTCATGCTCTTCCTTCTAGGGATAGCGGATGCTGCTGCTGGAACAATCGAAGTCTGAGAGATCTGGCCTCATCAGCTCTGGGAAGTGGGTTTTCTCTAGGACTACGGGAGTGCTGGATCGGTGCTGATTTGGGCAAAGGCGGTAACTTGAGAAGAATCTTCAGGGGAAGAAGTCCATATCTGATTATGTTCTTTCTGCACTTTCAAAGATTAAGAGTGATCTGGAGTCATATTAGGAGACAAGGTAGTGCTTCTGTTTCAATGACAGATGGAGAAACTGGTTATACTCACTACCTGATCCTCTTCGTAGCCTTGCAGGACCTGTGCCAGAGATTACATGGGCGTGAGTTTTCTTTACTGTGGCTTTGCCAATATCAAAATTCTGAAGTCTTTGTAAATGCAACACTAGTTGAGGAGCCAGAGCTGCATAGGAGTTTTCCTGTGTTTGCTTTAGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

170

Amino Acids

19.28

Weight (kDa)

8.8

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	36, 78, 192
AclWI	GGATC	2 cut(s)	176, 343
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	2 cut(s)	196, 456
AgsI	TTSAA	2 cut(s)	257, 312
AhlI	ACTAGT	1 cut(s)	457
AluBI	AGCT	3 cut(s)	20, 128, 475
AluI	AGCT	3 cut(s)	20, 128, 475
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	2 cut(s)	176, 343
AlwNI	CAGNNNCTG	1 cut(s)	373
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	84, 87, 475
ApoI	RAATTY	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BbvI	GCAGC	3 cut(s)	71, 74, 462
BccI	CCATC	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	4 cut(s)	51, 69, 149, 458
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	3 cut(s)	85, 88, 476
BlsI	GCNGC	3 cut(s)	86, 89, 477
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	468
BmsI	GCATC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse1I	ACTGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	71, 74, 462
BseYI	CCCAGC	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	4 cut(s)	112, 168, 270, 348
BspACI	CCGC	3 cut(s)	36, 78, 192
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	2 cut(s)	176, 343
BspQI	GCTCTTC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	4 cut(s)	112, 168, 270, 348
Bst4CI	ACNGT	2 cut(s)	28, 411
Bst6I	CTCTTC	2 cut(s)	66, 359
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	4 cut(s)	115, 171, 273, 351
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	4 cut(s)	112, 168, 270, 348
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 125, 475
BstV1I	GCAGC	3 cut(s)	71, 74, 462
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	370
CviAII	CATG	2 cut(s)	56, 389
CviJI	RGCY	8 cut(s)	9, 20, 119, 128, 362, 415, 469, 475
CviKI_1	RGCY	8 cut(s)	9, 20, 119, 128, 362, 415, 469, 475
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	4 cut(s)	114, 170, 272, 350
DpnII	GATC	4 cut(s)	112, 168, 270, 348
Eam1104I	CTCTTC	2 cut(s)	66, 359
EarI	CTCTTC	2 cut(s)	66, 359
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	196, 456
EcoO109I	RGGNCCY	1 cut(s)	370
FaeI	CATG	2 cut(s)	59, 392
FaiI	YATR	7 cut(s)	57, 229, 239, 282, 336, 390, 480
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	55, 388
Fnu4HI	GCNGC	3 cut(s)	85, 88, 476
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	85, 88, 476
FspBI	CTAG	4 cut(s)	51, 69, 149, 458
GluI	GCNGC	3 cut(s)	85, 88, 476
GsaI	CCCAGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	59, 392
HinfI	GANTC	2 cut(s)	207, 277
Hpy188I	TCNGA	3 cut(s)	108, 234, 436
Hpy188III	TCNNGA	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	28, 411
HpyCH4V	TGCA	4 cut(s)	250, 367, 452, 478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 125, 475
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	59, 392
Kzo9I	GATC	4 cut(s)	112, 168, 270, 348
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	3 cut(s)	71, 74, 462
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	4 cut(s)	51, 69, 149, 458
MaeIII	GTNAC	2 cut(s)	22, 194
MalI	GATC	4 cut(s)	114, 170, 272, 350
MboI	GATC	4 cut(s)	112, 168, 270, 348
MboII	GAAGA	5 cut(s)	53, 202, 216, 231, 346
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	4 cut(s)	55, 130, 362, 457
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	84, 125, 475
NdeII	GATC	4 cut(s)	112, 168, 270, 348
NlaIII	CATG	2 cut(s)	59, 392
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	86, 89, 477
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	370
PspPPI	RGGWCCY	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	3 cut(s)	85, 88, 476
Sau3AI	GATC	4 cut(s)	112, 168, 270, 348
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	1 cut(s)	286
SetI	ASST	7 cut(s)	22, 47, 130, 298, 348, 375, 477
SfaNI	GCATC	1 cut(s)	71
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	3 cut(s)	36, 78, 192
SspMI	CTAG	4 cut(s)	51, 69, 149, 458
TaaI	ACNGT	2 cut(s)	28, 411
TaqI	TCGA	2 cut(s)	40, 100
TasI	AATT	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	3 cut(s)	84, 87, 475
Tsp45I	GTSAC	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XspI	CTAG	4 cut(s)	51, 69, 149, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.