Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Forward (+)

27284330 .. 27290901

Gene Structure 6572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCAAGGATGCACCAACGGTATATATGTTCATCTGCCTGGAGCGCTGTTAAACCAAAGTTTGAGCTATTTGCGTGGTTTTAATTCTCACAGTAAATTTACATTTGAACCAATATGCTCGCAGGCACTTGCGTTCTATAAATGTAAGGATTTGATAGTGAAGAATCTCAAGATACAAGATGCTCAGCAAATTCATGTGTCTTTCCAGAAGTGCATGAACGTTCTAGCTTCCAATCTCTCAATTACTGCGCCAGAGAAAAGCCCCAACACCGATGGAATTCATGTTACAAATACTCAAGACATACTCATCACAACCTCTATTATAGCCACTGGTGATGATTGTATTTCAATTGTAAGTGGATCCGAAAAGGTGCAAGCAATTAACATAACCTGCGGACCTGGACATGGAATCAGTATCGGAAGCTTGGGATCTGGAAAATCAGAAGCTTATGTTTCTGAAGTTGCTCTATATGGAGCTAAACTAATTGGAACCACAAATGGAGTCAGGATCAAGACTTGGCAGGGAGGATCTGGTAGTGCAAACAACATCACATTTGAGAACATTGAAATGCTTGATGTTACCAACCCCATCCTAATAGATCAATACTACTGTGACAGCAAGAAGCCATGTAAAGAACAGAAATCGGCAGTTCAAGTGCAAAATGTATTGTACAAGAACATCAAAGGAACAAGTGCCTCAGAAGTTGCTATTAAGTTTGATTGCAGCAAGAACTTTCCTTGTCAGGGTATTGTGTTGCAAGACATTAAACTTGAGCATGGAGGAGGGAAAACAGCTAAAGCATTATGCAACAATATTAATTTCACTAGCATAGGAGTTGTTTCCCCTCTCTGTTATCAAGCGAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

289

Amino Acids

31.04

Weight (kDa)

8.38

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	41 - 273	6.2e-81	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	398
AciI	CCGC	1 cut(s)	393
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	5 cut(s)	354, 367, 436, 515, 535
AcsI	RAATTY	3 cut(s)	95, 189, 276
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	671
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	404, 743
AgsI	TTSAA	4 cut(s)	107, 348, 566, 653
AjnI	CCWGG	2 cut(s)	37, 397
AluBI	AGCT	6 cut(s)	66, 227, 423, 446, 476, 794
AluI	AGCT	6 cut(s)	66, 227, 423, 446, 476, 794
AlwI	GGATC	5 cut(s)	354, 367, 436, 515, 535
Aor51HI	AGCGCT	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	723
ApoI	RAATTY	3 cut(s)	95, 189, 276
AseI	ATTAAT	1 cut(s)	816
AspLEI	GCGC	2 cut(s)	46, 250
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	735
BccI	CCATC	2 cut(s)	266, 596
BciT130I	CCWGG	2 cut(s)	39, 399
BfaI	CTAG	2 cut(s)	224, 825
BfoI	RGCGCY	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	398
BisI	GCNGC	1 cut(s)	724
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	725
Bme1390I	CCNGG	2 cut(s)	39, 399
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	361, 490
BmrFI	CCNGG	2 cut(s)	39, 399
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	3 cut(s)	152, 279, 791
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 743
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	39, 399
BseGI	GGATG	2 cut(s)	14, 588
BseLI	CCNNNNNNNGG	2 cut(s)	404, 743
BseMII	CTCAG	2 cut(s)	197, 711
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	795
BseXI	GCAGC	1 cut(s)	735
BslI	CCNNNNNNNGG	2 cut(s)	404, 743
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	5 cut(s)	359, 428, 507, 527, 598
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	196, 710
BspLI	GGNNCC	2 cut(s)	361, 490
BspMI	ACCTGC	1 cut(s)	398
BspPI	GGATC	5 cut(s)	354, 367, 436, 515, 535
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	5 cut(s)	359, 428, 507, 527, 598
Bst2UI	CCWGG	2 cut(s)	39, 399
Bst4CI	ACNGT	3 cut(s)	20, 92, 611
BstAUI	TGTACA	1 cut(s)	669
BstC8I	GCNNGC	3 cut(s)	119, 123, 375
BstDEI	CTNAG	2 cut(s)	183, 697
BstF5I	GGATG	2 cut(s)	14, 588
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 250
BstKTI	GATC	5 cut(s)	362, 431, 510, 530, 601
BstMBI	GATC	5 cut(s)	359, 428, 507, 527, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	2 cut(s)	39, 399
BstSCI	CCNGG	2 cut(s)	37, 397
BstV1I	GCAGC	1 cut(s)	735
BstX2I	RGATCY	3 cut(s)	359, 428, 527
BstYI	RGATCY	3 cut(s)	359, 428, 527
BtsCI	GGATG	2 cut(s)	14, 588
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	3 cut(s)	119, 123, 375
CfoI	GCGC	2 cut(s)	46, 250
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	670
CviAII	CATG	6 cut(s)	194, 214, 281, 404, 627, 776
CviJI	RGCY	9 cut(s)	66, 227, 261, 326, 423, 446, 476, 625, 794
CviKI_1	RGCY	9 cut(s)	66, 227, 261, 326, 423, 446, 476, 625, 794
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	2 cut(s)	183, 697
DpnI	GATC	5 cut(s)	361, 430, 509, 529, 600
DpnII	GATC	5 cut(s)	359, 428, 507, 527, 598
Eco47I	GGWCC	1 cut(s)	395
Eco47III	AGCGCT	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	37, 397
FaeI	CATG	6 cut(s)	197, 217, 284, 407, 630, 779
FatI	CATG	6 cut(s)	193, 213, 280, 403, 626, 775
Fnu4HI	GCNGC	1 cut(s)	724
FokI	GGATG	2 cut(s)	21, 575
Fsp4HI	GCNGC	1 cut(s)	724
FspBI	CTAG	2 cut(s)	224, 825
GlaI	GCGC	2 cut(s)	45, 249
GluI	GCNGC	1 cut(s)	724
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	47
HhaI	GCGC	2 cut(s)	46, 250
Hin1II	CATG	6 cut(s)	197, 217, 284, 407, 630, 779
Hin6I	GCGC	2 cut(s)	44, 248
HinP1I	GCGC	2 cut(s)	44, 248
HindIII	AAGCTT	2 cut(s)	421, 444
HinfI	GANTC	3 cut(s)	163, 408, 501
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	5 cut(s)	364, 419, 442, 457, 700
Hpy188III	TCNNGA	6 cut(s)	169, 205, 296, 432, 505, 511
HpyCH4III	ACNGT	3 cut(s)	20, 92, 611
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	9 cut(s)	4, 12, 213, 373, 539, 658, 723, 757, 807
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	183, 697
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	197, 217, 284, 407, 630, 779
HspAI	GCGC	2 cut(s)	44, 248
Kzo9I	GATC	5 cut(s)	359, 428, 507, 527, 598
LmnI	GCTCC	2 cut(s)	41, 473
Lsp1109I	GCAGC	1 cut(s)	735
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	224, 825
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	283, 577, 611
MalI	GATC	5 cut(s)	361, 430, 509, 529, 600
MboI	GATC	5 cut(s)	359, 428, 507, 527, 598
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	3 cut(s)	359, 428, 527
MluCI	AATT	9 cut(s)	82, 95, 189, 240, 276, 348, 378, 483, 817
MlyI	GAGTC	1 cut(s)	510
MnlI	CCTC	6 cut(s)	325, 518, 706, 773, 776, 855
MseI	TTAA	6 cut(s)	50, 81, 381, 711, 765, 816
MslI	CAYNNNNRTG	1 cut(s)	566
MspR9I	CCNGG	2 cut(s)	39, 399
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	2 cut(s)	39, 399
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	5 cut(s)	359, 428, 507, 527, 598
NlaIII	CATG	6 cut(s)	197, 217, 284, 407, 630, 779
NlaIV	GGNNCC	2 cut(s)	361, 490
NmuCI	GTSAC	1 cut(s)	611
PfeI	GAWTC	2 cut(s)	163, 408
PkrI	GCNGC	1 cut(s)	725
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	816
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	37, 397
PspGI	CCWGG	2 cut(s)	37, 397
PspN4I	GGNNCC	2 cut(s)	361, 490
PspPI	GGNCC	1 cut(s)	395
PsuI	RGATCY	3 cut(s)	359, 428, 527
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	6 cut(s)	50, 81, 381, 711, 765, 816
SatI	GCNGC	1 cut(s)	724
Sau3AI	GATC	5 cut(s)	359, 428, 507, 527, 598
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	2 cut(s)	39, 399
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	3 cut(s)	167, 294, 770
SmoI	CTYRAG	3 cut(s)	167, 294, 770
Sse9I	AATT	9 cut(s)	82, 95, 189, 240, 276, 348, 378, 483, 817
SsiI	CCGC	1 cut(s)	393
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	2 cut(s)	224, 825
StyD4I	CCNGG	2 cut(s)	37, 397
TaaI	ACNGT	3 cut(s)	20, 92, 611
TaiI	ACGT	1 cut(s)	222
TasI	AATT	9 cut(s)	82, 95, 189, 240, 276, 348, 378, 483, 817
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	2 cut(s)	163, 408
Tru1I	TTAA	6 cut(s)	50, 81, 381, 711, 765, 816
Tru9I	TTAA	6 cut(s)	50, 81, 381, 711, 765, 816
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	1 cut(s)	723
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	4 cut(s)	20, 182, 230, 269
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	395
VspI	ATTAAT	1 cut(s)	816
XapI	RAATTY	3 cut(s)	95, 189, 276
XspI	CTAG	2 cut(s)	224, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.