Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Forward (+)

26510352 .. 26516314

Gene Structure 5963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTCACTTAAAAAATTTCTTCTCTCAATATTCATCATCATCATCATCAATATCATCTCTTCAATTTCATGTGACAGAAGTACTAATTTGCAAGAGAACACACTTGAGGATTTTGTTGATGAAGCATCAGGTACTGGATATGATTCCCAAGCGTATCCTTCATACTGGAGCATGATTGATGACAGCAACGACAACTTGGAGGACTTGATCGAGCAAAGTACTGATGATGTCCTCACTTTGAAGAGCTCTGATCAAGTGGCAGTTACCACAGTCAGTGTTCATGATTTTGGAGCTAAGGGTGATGGAGAAACTGATGACACAGAGGCGTTTGTGAAGGCATGGAAGGTAGCTTGTTCGTCTAAGAATGCAGCTGTTTTGGTGGTGCCTCAGAAGATCTATTGGCTTAAACCAATTAGATTTTCAGGTCCTTGCTTATCTCAATTGATGGTGCAGATTGTTGGTACCTTAGAAGCGTCGGATGATCGATCTGACTTCCGCCAAGATGGTAAACACTGGCTTATTTTTGATAGTGTTCGGAAGTTACTGCTTGATGGTGGTGGAACCATCAATGGCAATGGCAAGGAATGGTGGCAGAACTCATGCAAAATCAACAAATCTAAGCCATGCAAGGATGCACCAACGGCACTTGCGTTCTATAAATGTAAGGATTTGATAGTGAAGAATCTCAAGATACAAGATGCTCAGCAAATTCATGTGTCTTTCCAGAAGTGCATGAACGTTCTAGCTTCCAATCTCTCAATTACTGCGCCAGAGAAAAGCCCCAACACCGATGGAATTCATGTTACAAATACTCAAGACATACTCATCACAACCTCTATTATAGCCACTGGTGATGATTGTATTTCAATTGTAAGTGGATCCGAAAAGGTGCAAGCAATTAACATAACCTGCGGACCTGGACATGGAATCAGTATCGGAAGCTTGGGATCTGGAAAATCAGAAGCTTATGTTTCTGAAGTTGCTCTATATGGAGCTAAACTAATTGGAACCACAAATGGAGTCAGGATCAAGACTTGGCAGGGAGGATCTGGTAGTGCAAACAACATCACATTTGAGAACATTGAAATGCTTGATGTTACCAACCCCATCCTAATAGATCAATACTACTGTGACAGCAAGAAGCCATGTAAAGAACAGAAATCGGCAGTTCAAGTGCAAAATGTATTGTACAAGAACATCAAAGGAACAAGTGCCTCAGAAGTTGCTATTAAGTTTGATTGCAGCAAGAACTTTCCTTGTCAGGGTATTGTGTTGCAAGACATTAAACTTGAGCATGGAGGAGGGAAAACAGCTAAAGCATTATGCAACAATATTAATTTCACTAGCATAGGAGTTGTTTCCCCTCTCTGTTATCAAGCGAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

462

Amino Acids

50.2

Weight (kDa)

5.51

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	118 - 446	2.8e-104	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	917
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	2 cut(s)	382, 461
AciI	CCGC	2 cut(s)	496, 912
AclI	AACGTT	1 cut(s)	738
AclWI	GGATC	5 cut(s)	873, 886, 955, 1034, 1054
AcsI	RAATTY	3 cut(s)	14, 708, 795
AcuI	CTGAAG	1 cut(s)	996
AfaI	GTAC	5 cut(s)	82, 133, 220, 463, 1190
AfiI	CCNNNNNNNGG	2 cut(s)	923, 1262
AgsI	TTSAA	5 cut(s)	63, 241, 867, 1085, 1172
AjnI	CCWGG	1 cut(s)	916
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	9 cut(s)	246, 293, 350, 371, 746, 942, 965, 995, 1313
AluI	AGCT	9 cut(s)	246, 293, 350, 371, 746, 942, 965, 995, 1313
Alw21I	GWGCWC	1 cut(s)	248
AlwI	GGATC	5 cut(s)	873, 886, 955, 1034, 1054
AlwNI	CAGNNNCTG	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	368, 1242
ApoI	RAATTY	3 cut(s)	14, 708, 795
AseI	ATTAAT	1 cut(s)	1335
Asp718I	GGTACC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	2 cut(s)	425, 914
AsuHPI	GGTGA	2 cut(s)	311, 863
AvaII	GGWCC	2 cut(s)	425, 914
BamHI	GGATCC	1 cut(s)	878
BanI	GGYRCC	2 cut(s)	382, 461
BanII	GRGCYC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	380, 1254
BccI	CCATC	7 cut(s)	296, 439, 497, 545, 572, 785, 1115
BceAI	ACGGC	1 cut(s)	657
BciT130I	CCWGG	1 cut(s)	918
BciVI	GTATCC	1 cut(s)	165
BclI	TGATCA	1 cut(s)	250
BfaI	CTAG	2 cut(s)	743, 1344
BfuAI	ACCTGC	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	393
BisI	GCNGC	2 cut(s)	369, 1243
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	2 cut(s)	370, 1244
BmcAI	AGTACT	2 cut(s)	82, 220
Bme1390I	CCNGG	1 cut(s)	918
Bme18I	GGWCC	2 cut(s)	425, 914
BmgT120I	GGNCC	2 cut(s)	425, 914
BmiI	GGNNCC	5 cut(s)	384, 463, 562, 880, 1009
BmrFI	CCNGG	1 cut(s)	918
BmsI	GCATC	3 cut(s)	134, 622, 688
BpmI	CTGGAG	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	4 cut(s)	125, 671, 798, 1310
Bsa29I	ATCGAT	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	923, 1262
Bse1I	ACTGG	4 cut(s)	139, 170, 518, 853
Bse3DI	GCAATG	1 cut(s)	580
BseBI	CCWGG	1 cut(s)	918
BseCI	ATCGAT	1 cut(s)	484
BseGI	GGATG	3 cut(s)	484, 637, 1107
BseLI	CCNNNNNNNGG	2 cut(s)	923, 1262
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	3 cut(s)	401, 716, 1230
BseNI	ACTGG	4 cut(s)	139, 170, 518, 853
BseRI	GAGGAG	1 cut(s)	1314
BseXI	GCAGC	2 cut(s)	380, 1254
BsgI	GTGCAG	1 cut(s)	470
BshNI	GGYRCC	2 cut(s)	382, 461
BshVI	ATCGAT	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	923, 1262
BsmI	GAATGC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	1188
Bsp1720I	GCTNAGC	1 cut(s)	702
BspACI	CCGC	2 cut(s)	496, 912
BspCNI	CTCAG	3 cut(s)	400, 715, 1229
BspDI	ATCGAT	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	5 cut(s)	384, 463, 562, 880, 1009
BspMI	ACCTGC	1 cut(s)	917
BspPI	GGATC	5 cut(s)	873, 886, 955, 1034, 1054
BspQI	GCTCTTC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	382, 461
BsrDI	GCAATG	1 cut(s)	580
BsrGI	TGTACA	1 cut(s)	1188
BsrI	ACTGG	4 cut(s)	139, 170, 518, 853
Bst2UI	CCWGG	1 cut(s)	918
Bst4CI	ACNGT	2 cut(s)	271, 1130
Bst6I	CTCTTC	2 cut(s)	64, 236
BstAUI	TGTACA	1 cut(s)	1188
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	7 cut(s)	294, 360, 387, 466, 618, 702, 1216
BstF5I	GGATG	3 cut(s)	484, 637, 1107
BstHHI	GCGC	1 cut(s)	769
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	1 cut(s)	918
BstSCI	CCNGG	1 cut(s)	916
BstV1I	GCAGC	2 cut(s)	380, 1254
BstX2I	RGATCY	4 cut(s)	393, 878, 947, 1046
BstYI	RGATCY	4 cut(s)	393, 878, 947, 1046
Bsu15I	ATCGAT	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	484, 637, 1107
BtsIMutI	CAGTG	3 cut(s)	280, 511, 846
BveI	ACCTGC	1 cut(s)	917
Cac8I	GCNNGC	1 cut(s)	894
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	769
Cfr13I	GGNCC	2 cut(s)	425, 914
ClaI	ATCGAT	1 cut(s)	484
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	5 cut(s)	81, 132, 219, 462, 1189
CviQI	GTAC	5 cut(s)	81, 132, 219, 462, 1189
DdeI	CTNAG	7 cut(s)	294, 360, 387, 466, 618, 702, 1216
Eam1104I	CTCTTC	2 cut(s)	64, 236
EarI	CTCTTC	2 cut(s)	64, 236
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	425, 914
Eco53kI	GAGCTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	996
EcoICRI	GAGCTC	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	916
EcoT38I	GRGCYC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	369, 1243
FokI	GGATG	3 cut(s)	491, 644, 1094
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	369, 1243
FspBI	CTAG	2 cut(s)	743, 1344
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	2 cut(s)	369, 1243
GsuI	CTGGAG	1 cut(s)	187
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	1 cut(s)	769
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HindIII	AAGCTT	2 cut(s)	940, 963
HinfI	GANTC	4 cut(s)	143, 682, 927, 1020
HphI	GGTGA	2 cut(s)	311, 863
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188III	TCNNGA	7 cut(s)	281, 688, 724, 815, 951, 1024, 1030
Hpy8I	GTNNAC	1 cut(s)	509
Hpy99I	CGWCG	1 cut(s)	478
HpyAV	CCTTC	3 cut(s)	168, 328, 337
HpyCH4III	ACNGT	2 cut(s)	271, 1130
HpyCH4IV	ACGT	1 cut(s)	738
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	7 cut(s)	294, 360, 387, 466, 618, 702, 1216
HpySE526I	ACGT	1 cut(s)	738
HspAI	GCGC	1 cut(s)	767
KpnI	GGTACC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	3 cut(s)	168, 290, 992
Lsp1109I	GCAGC	2 cut(s)	380, 1254
LweI	GCATC	3 cut(s)	134, 622, 688
MaeI	CTAG	2 cut(s)	743, 1344
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	7 cut(s)	3, 71, 262, 540, 802, 1096, 1130
MboII	GAAGA	5 cut(s)	11, 51, 253, 403, 691
MfeI	CAATTG	2 cut(s)	440, 867
MflI	RGATCY	4 cut(s)	393, 878, 947, 1046
MhlI	GDGCHC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	1029
MmeI	TCCRAC	1 cut(s)	456
MseI	TTAA	6 cut(s)	9, 405, 900, 1230, 1284, 1335
MslI	CAYNNNNRTG	1 cut(s)	1085
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	918
MunI	CAATTG	2 cut(s)	440, 867
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	918
MwoI	GCNNNNNNNGC	1 cut(s)	641
NlaIV	GGNNCC	5 cut(s)	384, 463, 562, 880, 1009
NmuCI	GTSAC	3 cut(s)	3, 71, 1130
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	647
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	143, 682, 927
PkrI	GCNGC	2 cut(s)	370, 1244
PleI	GAGTC	1 cut(s)	1028
PpsI	GAGTC	1 cut(s)	1028
PpuMI	RGGWCCY	1 cut(s)	425
PshBI	ATTAAT	1 cut(s)	1335
Psp124BI	GAGCTC	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	738
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	916
PspGI	CCWGG	1 cut(s)	916
PspN4I	GGNNCC	5 cut(s)	384, 463, 562, 880, 1009
PspPI	GGNCC	2 cut(s)	425, 914
PspPPI	RGGWCCY	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	4 cut(s)	393, 878, 947, 1046
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	5 cut(s)	82, 133, 220, 463, 1190
RsaNI	GTAC	5 cut(s)	81, 132, 219, 462, 1189
RseI	CAYNNNNRTG	1 cut(s)	1085
SacI	GAGCTC	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	6 cut(s)	9, 405, 900, 1230, 1284, 1335
SatI	GCNGC	2 cut(s)	369, 1243
Sau96I	GGNCC	2 cut(s)	425, 914
ScaI	AGTACT	2 cut(s)	82, 220
SchI	GAGTC	1 cut(s)	1029
ScrFI	CCNGG	1 cut(s)	918
SduI	GDGCHC	1 cut(s)	248
SfaNI	GCATC	3 cut(s)	134, 622, 688
SinI	GGWCC	2 cut(s)	425, 914
SmiMI	CAYNNNNRTG	1 cut(s)	1085
SmlI	CTYRAG	4 cut(s)	104, 686, 813, 1289
SmoI	CTYRAG	4 cut(s)	104, 686, 813, 1289
SsiI	CCGC	2 cut(s)	496, 912
SspI	AATATT	2 cut(s)	30, 1333
SspMI	CTAG	2 cut(s)	743, 1344
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	916
TaaI	ACNGT	2 cut(s)	271, 1130
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	2 cut(s)	210, 484
TatI	WGTACW	3 cut(s)	80, 218, 1188
TfiI	GAWTC	3 cut(s)	143, 682, 927
Tru1I	TTAA	6 cut(s)	9, 405, 900, 1230, 1284, 1335
Tru9I	TTAA	6 cut(s)	9, 405, 900, 1230, 1284, 1335
TscAI	CASTG	3 cut(s)	280, 518, 853
TseFI	GTSAC	3 cut(s)	3, 71, 1130
TseI	GCWGC	2 cut(s)	368, 1242
Tsp45I	GTSAC	3 cut(s)	3, 71, 1130
TspDTI	ATGAA	8 cut(s)	22, 57, 135, 150, 269, 701, 749, 788
TspRI	CASTG	3 cut(s)	280, 518, 853
VpaK11BI	GGWCC	2 cut(s)	425, 914
VspI	ATTAAT	1 cut(s)	1335
XapI	RAATTY	3 cut(s)	14, 708, 795
XspI	CTAG	2 cut(s)	743, 1344
ZrmI	AGTACT	2 cut(s)	82, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.