Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Forward (+)

6345802 .. 6347625

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAGTTTTACTCGTGTATTTTGGCTGCAGGCACTCACCTTCTATAAGTGCAAGAATTTGATGGTGAGGAACCTGAAAATTCAAGATGCACAACAAATTCATGTGTCTTTCCAGAAATGCATGAACGTTGAAGTTTCCAATCTCTCAATAACTGCACCAGAAAAAAGCCCCAACACCGACGGAATTCATGTTACAGACACTCAAAACATATTGATCACAAGCTGTGTTACAGCCACAGGTGATGATTGTCTTTCTATTGTAAATGGATCCAAATTGGTGCAAGCTTCGAACATAACCTGCGGATCAGGCCATGGTATCAGGTTGAATTTTGGTTTTCACAATGACCTCAGTATTGGAAGCTTGGGATCTGGAAACTCAACAGCGTATGTTTCGGATATTACAGTGAATGGAGCAAAACTTTATGGAACTACAAATGGAGTTCGGATCAAAACTTGGCAGTACAAAGTACATACAAAAACCAGCAAGGTGATATATATGCAGGGAGGATCAGGAAGTGCAAGCAACATCAGATTTCAGAACATTGAAATGCACAATGTTACCAACCCCATACTTATAGACCAATATTACTGTGACAGAAAGAAACCGTGCAAAGAACAGAGATCAGCGGTTGAAGTAAAAAATGTGGTGTACAAAAACATCAAAGGAACAAGTGCTTCAGATATTGCTATAAAATTCGATTGCAGCAAGAGCTTCCCTTGTCTGGGGATTATATTGCAAGATATTAACCTCCAACACGAAGGAAGGAAAACAGCTAAAGCTCTGTGCAACAATGTTAACGTGACTAGCATAGGTGTCTCTCTCTGTATCCGCGGAAGCCAAAATCCAATCCAAACCTTCGGACAATCCGATTCCGGCGTCTCTCAAAAAATCCCGGAACTACATAATCCCGTCGATTCTACATTTCCACCACGTTTCGTTTATTGGCGGGGAGCTTCTAGTGTTGTACATACAAAATTTGAATGGGAACTCCGGAATTTCCAGATCTGGGTAGGCATTGCTACGTCGCCGAGTGCCAGCAGATCGATTTCTTGCCCTTCACCTGCGATAGCTGCCATCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

361

Amino Acids

39.47

Weight (kDa)

9.22

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1069
Acc36I	ACCTGC	2 cut(s)	305, 1069
AccII	CGCG	1 cut(s)	831
AccIII	TCCGGA	1 cut(s)	990
AciI	CCGC	5 cut(s)	300, 626, 829, 831, 946
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	6 cut(s)	261, 274, 310, 373, 452, 514
AcsI	RAATTY	8 cut(s)	55, 78, 96, 183, 325, 692, 974, 994
AcuI	CTGAAG	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	876
AfaI	GTAC	4 cut(s)	461, 468, 650, 966
AfiI	CCNNNNNNNGG	3 cut(s)	721, 722, 1006
AgsI	TTSAA	6 cut(s)	83, 131, 325, 545, 632, 980
AluBI	AGCT	8 cut(s)	222, 284, 360, 711, 773, 779, 953, 1070
AluI	AGCT	8 cut(s)	222, 284, 360, 711, 773, 779, 953, 1070
Alw26I	GTCTC	2 cut(s)	820, 883
AlwI	GGATC	6 cut(s)	261, 274, 310, 373, 452, 514
Aor13HI	TCCGGA	1 cut(s)	990
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	25, 702, 1070
ApoI	RAATTY	8 cut(s)	55, 78, 96, 183, 325, 692, 974, 994
AsuC2I	CCSGG	1 cut(s)	893
AsuHPI	GGTGA	5 cut(s)	28, 76, 251, 499, 1050
AsuII	TTCGAA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	12, 714, 1057
BccI	CCATC	2 cut(s)	55, 1082
BciVI	GTATCC	1 cut(s)	836
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	893
BcoDI	GTCTC	2 cut(s)	820, 883
BfaI	CTAG	2 cut(s)	804, 957
BfmI	CTRYAG	1 cut(s)	26
BfuAI	ACCTGC	2 cut(s)	305, 1069
BfuI	GTATCC	1 cut(s)	836
BglII	AGATCT	1 cut(s)	1002
BisI	GCNGC	3 cut(s)	26, 703, 1071
BlsI	GCNGC	3 cut(s)	27, 704, 1072
Bme1390I	CCNGG	1 cut(s)	893
BmiI	GGNNCC	2 cut(s)	71, 268
BmrFI	CCNGG	1 cut(s)	893
BmsI	GCATC	1 cut(s)	76
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	893
Bsa29I	ATCGAT	1 cut(s)	1043
BsaHI	GRCGYC	1 cut(s)	876
BsaJI	CCNNGG	2 cut(s)	310, 829
BsaWI	WCCGGW	1 cut(s)	990
Bsc4I	CCNNNNNNNGG	3 cut(s)	721, 722, 1006
Bse3DI	GCAATG	1 cut(s)	1014
BseAI	TCCGGA	1 cut(s)	990
BseCI	ATCGAT	1 cut(s)	1043
BseDI	CCNNGG	2 cut(s)	310, 829
BseLI	CCNNNNNNNGG	3 cut(s)	721, 722, 1006
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	1 cut(s)	361
BseXI	GCAGC	3 cut(s)	12, 714, 1057
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	831
BshFI	GGCC	1 cut(s)	309
BshVI	ATCGAT	1 cut(s)	1043
BsiSI	CCGG	3 cut(s)	873, 893, 991
BslI	CCNNNNNNNGG	3 cut(s)	721, 722, 1006
BsmAI	GTCTC	2 cut(s)	820, 883
BsmBI	CGTCTC	1 cut(s)	883
BsnI	GGCC	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	990
Bsp1407I	TGTACA	2 cut(s)	648, 964
Bsp143I	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	5 cut(s)	300, 626, 829, 831, 946
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	360
BspDI	ATCGAT	1 cut(s)	1043
BspEI	TCCGGA	1 cut(s)	990
BspFNI	CGCG	1 cut(s)	831
BspLI	GGNNCC	2 cut(s)	71, 268
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	2 cut(s)	305, 1069
BspPI	GGATC	6 cut(s)	261, 274, 310, 373, 452, 514
BspT104I	TTCGAA	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	1014
BsrGI	TGTACA	2 cut(s)	648, 964
BssECI	CCNNGG	2 cut(s)	310, 829
BssMI	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
BssNI	GRCGYC	1 cut(s)	876
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	403, 590, 606
BstACI	GRCGYC	1 cut(s)	876
BstAUI	TGTACA	2 cut(s)	648, 964
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	30, 282, 520, 1036
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	2 cut(s)	310, 829
BstFNI	CGCG	1 cut(s)	831
BstKTI	GATC	9 cut(s)	216, 269, 305, 368, 447, 509, 623, 1005, 1043
BstMAI	GTCTC	2 cut(s)	820, 883
BstMBI	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 708, 1070
BstSCI	CCNGG	1 cut(s)	891
BstSFI	CTRYAG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	831
BstV1I	GCAGC	3 cut(s)	12, 714, 1057
BstX2I	RGATCY	3 cut(s)	266, 365, 1002
BstYI	RGATCY	3 cut(s)	266, 365, 1002
Bsu15I	ATCGAT	1 cut(s)	1043
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	1043
BtgI	CCRYGG	2 cut(s)	310, 829
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	2 cut(s)	305, 1069
Cac8I	GCNNGC	4 cut(s)	30, 282, 520, 1036
Cfr42I	CCGCGG	1 cut(s)	832
ClaI	ATCGAT	1 cut(s)	1043
CseI	GACGC	1 cut(s)	865
Csp6I	GTAC	4 cut(s)	460, 467, 649, 965
CviAII	CATG	4 cut(s)	101, 121, 188, 311
CviQI	GTAC	4 cut(s)	460, 467, 649, 965
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	9 cut(s)	215, 268, 304, 367, 446, 508, 622, 1004, 1042
DpnII	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
Eco130I	CCWWGG	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	4 cut(s)	104, 124, 191, 314
FatI	CATG	4 cut(s)	100, 120, 187, 310
FauI	CCCGC	1 cut(s)	939
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	26, 703, 1071
Fsp4HI	GCNGC	3 cut(s)	26, 703, 1071
FspBI	CTAG	2 cut(s)	804, 957
GluI	GCNGC	3 cut(s)	26, 703, 1071
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	3 cut(s)	873, 893, 991
HgaI	GACGC	1 cut(s)	865
Hin1I	GRCGYC	1 cut(s)	876
Hin1II	CATG	4 cut(s)	104, 124, 191, 314
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HindIII	AAGCTT	2 cut(s)	282, 358
HinfI	GANTC	2 cut(s)	869, 914
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	3 cut(s)	873, 893, 991
HphI	GGTGA	5 cut(s)	28, 76, 251, 499, 1050
Hpy166II	GTNNAC	2 cut(s)	649, 796
Hpy188I	TCNGA	7 cut(s)	394, 444, 530, 537, 679, 860, 868
Hpy188III	TCNNGA	6 cut(s)	83, 112, 369, 510, 991, 1000
Hpy8I	GTNNAC	2 cut(s)	649, 796
Hpy99I	CGWCG	3 cut(s)	182, 914, 1027
HpyAV	CCTTC	5 cut(s)	49, 752, 756, 865, 1065
HpyCH4III	ACNGT	3 cut(s)	403, 590, 606
HpyCH4IV	ACGT	4 cut(s)	126, 798, 931, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 708, 1070
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	4 cut(s)	126, 798, 931, 1022
Hsp92I	GRCGYC	1 cut(s)	876
Hsp92II	CATG	4 cut(s)	104, 124, 191, 314
Kpn2I	TCCGGA	1 cut(s)	990
Ksp22I	TGATCA	1 cut(s)	213
KspAI	GTTAAC	1 cut(s)	796
KspI	CCGCGG	1 cut(s)	832
Kzo9I	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
LmnI	GCTCC	2 cut(s)	410, 950
Lsp1109I	GCAGC	3 cut(s)	12, 714, 1057
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	804, 957
MaeII	ACGT	4 cut(s)	126, 798, 931, 1022
MaeIII	GTNAC	5 cut(s)	190, 226, 556, 590, 799
MalI	GATC	9 cut(s)	215, 268, 304, 367, 446, 508, 622, 1004, 1042
MboI	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
MflI	RGATCY	3 cut(s)	266, 365, 1002
MluCI	AATT	9 cut(s)	55, 78, 96, 183, 272, 325, 692, 974, 994
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	4 cut(s)	60, 356, 497, 758
Mph1103I	ATGCAT	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	990
MseI	TTAA	2 cut(s)	744, 795
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	626, 831
MspI	CCGG	3 cut(s)	873, 893, 991
MspR9I	CCNGG	1 cut(s)	893
MvnI	CGCG	1 cut(s)	831
MwoI	GCNNNNNNNGC	3 cut(s)	306, 708, 1070
NciI	CCSGG	1 cut(s)	893
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
NlaIII	CATG	4 cut(s)	104, 124, 191, 314
NlaIV	GGNNCC	2 cut(s)	71, 268
NmeAIII	GCCGAG	1 cut(s)	1053
NmuCI	GTSAC	2 cut(s)	590, 799
NsiI	ATGCAT	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	1069
PcsI	WCGNNNNNNNCGW	1 cut(s)	864
PfeI	GAWTC	2 cut(s)	869, 914
PfoI	TCCNGGA	1 cut(s)	891
PkrI	GCNGC	3 cut(s)	27, 704, 1072
Psp1406I	AACGTT	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	71, 268
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	3 cut(s)	266, 365, 1002
RsaI	GTAC	4 cut(s)	461, 468, 650, 966
RsaNI	GTAC	4 cut(s)	460, 467, 649, 965
RseI	CAYNNNNRTG	1 cut(s)	545
SacII	CCGCGG	1 cut(s)	832
SaqAI	TTAA	2 cut(s)	744, 795
SatI	GCNGC	3 cut(s)	26, 703, 1071
Sau3AI	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
ScrFI	CCNGG	1 cut(s)	893
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	26
Sfr303I	CCGCGG	1 cut(s)	832
SfuI	TTCGAA	1 cut(s)	287
SgrBI	CCGCGG	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	9 cut(s)	55, 78, 96, 183, 272, 325, 692, 974, 994
SsiI	CCGC	5 cut(s)	300, 626, 829, 831, 946
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	2 cut(s)	804, 957
StyD4I	CCNGG	1 cut(s)	891
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	403, 590, 606
TaiI	ACGT	4 cut(s)	129, 801, 934, 1025
TaqI	TCGA	4 cut(s)	287, 696, 912, 1043
TasI	AATT	9 cut(s)	55, 78, 96, 183, 272, 325, 692, 974, 994
TatI	WGTACW	4 cut(s)	459, 466, 648, 964
TfiI	GAWTC	2 cut(s)	869, 914
Tru1I	TTAA	2 cut(s)	744, 795
Tru9I	TTAA	2 cut(s)	744, 795
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	590, 799
TseI	GCWGC	3 cut(s)	25, 702, 1070
Tsp45I	GTSAC	2 cut(s)	590, 799
TspDTI	ATGAA	3 cut(s)	89, 137, 176
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	408
XapI	RAATTY	8 cut(s)	55, 78, 96, 183, 325, 692, 974, 994
XspI	CTAG	2 cut(s)	804, 957
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.