Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Forward (+)

27586245 .. 27589521

Gene Structure 3277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGATTGATGACAGCAACGACAACTTGGAGGACTTGATCGAGCAAAGTACTGATGATGTCCTCACTTTGAAGAGCTCCGATCGAGTGGCAGTTACCACAGTCAGTGTTAATGATTTTGGAGCTAAGGGTGATGGAGAAACTGATGACACAGAGGCGTTCGTGAAGGCATGGAAGGTAGCTTGTTCGTCTAAGAATGCAACTGTTTTGGTGGTGCCTCAGAAGATCTATTGGCTTAAACCAATTAGATTTTCAGGCCCTTGCTTATCTCAATTGATGGTGCAGATTGTTGGTACCTTAGAAGCGTCGGATGATCGATCTGACTTCAGCCAAGATGGTAAACACTGGCTTATTTTTGATAGTGTTCGCAAGTTACTGCTTGATGGTGGTGGAACCATCAATGGCAATGGCAAGCAATGGTGGCAGAACTCATGCAAAATCAATAAATCTAAGCCATGCAAGGATGCACCAACGGCACTTGCGTTCTATAAATGTAAGGATTTGATAGTGAAGAATCTCAAGATACAAGATGCTCAGCAAATTCATGTGTCTTTCCAGAAGTGCATGAACGTTCTAGCTTCCAATCTCTCAATAACTGCACCAGAGAAAAGCCCCAACACCGATGGAATTCATGTTACAAATACTCAAGACATACTCATCACAACCTCTATTATAGCCACTGGTGATGATTGTATTTCAATTGTAAGTGGATCCGAAAAGGTGCAAGCAATGAACGTAACCTGCGGACCAGGACATGGAATTAGTATCGGAAGCTTGGGATCTGGAAAATCAGAAGCTTATGTTTCTGAAGTTGCTCTATATGGAGTTAAACTAATTGGAACCACAAATGGAGTCAGGATCAAGACTTGGGAGGGAGGATCTGGTAGTGCAAACAACATCACATTTGAGAACATTGAAATGCTTGATGTTACCAACCCCATCATAATAGATCAATACTACTGTGACAGCAAGAAGCCATGTAAAGAACAGAAATCGGCAGTTCAAGTGAAAAATGTATTGTACAAGAACATCACAGGAACAAGTGCCTCAGACGTTGCTATTAAGTTTGATTGCAGCAAGAACTTTCCTTGTCAGGGTATCGTGTTGCAAGATATTAAACTTGAGCATCGAGGAGGGAAAACAGCTAAAGCATTATGCAACAATATTAATTTCACTAGCATAGGAGTTGTTTCCCCAATCTGTTCTCAAGCGAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

405

Amino Acids

43.76

Weight (kDa)

6.24

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	61 - 389	1e-104	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	746
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	2 cut(s)	211, 290
AccB7I	CCANNNNNTGG	1 cut(s)	752
AciI	CCGC	1 cut(s)	741
AclI	AACGTT	1 cut(s)	567
AclWI	GGATC	5 cut(s)	702, 715, 784, 863, 883
AcsI	RAATTY	2 cut(s)	537, 624
AcuI	CTGAAG	2 cut(s)	307, 825
AfaI	GTAC	3 cut(s)	49, 292, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	752, 1091
AgsI	TTSAA	4 cut(s)	70, 696, 914, 1001
AjnI	CCWGG	1 cut(s)	745
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	7 cut(s)	75, 122, 179, 575, 771, 794, 1142
AluI	AGCT	7 cut(s)	75, 122, 179, 575, 771, 794, 1142
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	5 cut(s)	702, 715, 784, 863, 883
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	1071
ApoI	RAATTY	2 cut(s)	537, 624
AseI	ATTAAT	1 cut(s)	1164
Asp718I	GGTACC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	254, 743
AsuHPI	GGTGA	2 cut(s)	140, 692
AvaII	GGWCC	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	707
BanI	GGYRCC	2 cut(s)	211, 290
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	1083
BccI	CCATC	7 cut(s)	125, 268, 326, 374, 401, 614, 944
BceAI	ACGGC	1 cut(s)	486
BciT130I	CCWGG	1 cut(s)	747
BfaI	CTAG	2 cut(s)	572, 1173
BfuAI	ACCTGC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	1 cut(s)	1072
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	1073
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	254, 743
BmiI	GGNNCC	5 cut(s)	213, 292, 391, 709, 838
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	3 cut(s)	451, 517, 1132
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	4 cut(s)	500, 627, 1139, 1188
Bsa29I	ATCGAT	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 1091
Bse1I	ACTGG	2 cut(s)	347, 682
Bse3DI	GCAATG	3 cut(s)	409, 419, 732
BseBI	CCWGG	1 cut(s)	747
BseCI	ATCGAT	1 cut(s)	313
BseGI	GGATG	2 cut(s)	313, 466
BseLI	CCNNNNNNNGG	2 cut(s)	752, 1091
BseMI	GCAATG	3 cut(s)	409, 419, 732
BseMII	CTCAG	3 cut(s)	230, 545, 1059
BseNI	ACTGG	2 cut(s)	347, 682
BseRI	GAGGAG	1 cut(s)	1143
BseXI	GCAGC	1 cut(s)	1083
BsgI	GTGCAG	2 cut(s)	299, 579
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	2 cut(s)	211, 290
BshVI	ATCGAT	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	752, 1091
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	1 cut(s)	741
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	3 cut(s)	229, 544, 1058
BspDI	ATCGAT	1 cut(s)	313
BspLI	GGNNCC	5 cut(s)	213, 292, 391, 709, 838
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	5 cut(s)	702, 715, 784, 863, 883
BspQI	GCTCTTC	1 cut(s)	65
BspT107I	GGYRCC	2 cut(s)	211, 290
BsrDI	GCAATG	3 cut(s)	409, 419, 732
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	2 cut(s)	347, 682
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	100, 202, 959
Bst6I	CTCTTC	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	1017
BstC8I	GCNNGC	2 cut(s)	410, 723
BstDEI	CTNAG	7 cut(s)	123, 189, 216, 295, 447, 531, 1045
BstF5I	GGATG	2 cut(s)	313, 466
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 470
BstNI	CCWGG	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	745
BstV1I	GCAGC	1 cut(s)	1083
BstX2I	RGATCY	4 cut(s)	222, 707, 776, 875
BstYI	RGATCY	4 cut(s)	222, 707, 776, 875
Bsu15I	ATCGAT	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	313, 466
BtsIMutI	CAGTG	3 cut(s)	109, 340, 675
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	2 cut(s)	410, 723
Cfr13I	GGNCC	2 cut(s)	254, 743
ClaI	ATCGAT	1 cut(s)	313
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	3 cut(s)	48, 291, 1018
CviAII	CATG	8 cut(s)	168, 429, 453, 542, 562, 629, 752, 975
CviQI	GTAC	3 cut(s)	48, 291, 1018
DdeI	CTNAG	7 cut(s)	123, 189, 216, 295, 447, 531, 1045
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	743
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	307, 825
EcoICRI	GAGCTC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	77
FaeI	CATG	8 cut(s)	171, 432, 456, 545, 565, 632, 755, 978
FatI	CATG	8 cut(s)	167, 428, 452, 541, 561, 628, 751, 974
Fnu4HI	GCNGC	1 cut(s)	1072
FokI	GGATG	2 cut(s)	320, 473
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	1072
FspBI	CTAG	2 cut(s)	572, 1173
GluI	GCNGC	1 cut(s)	1072
HaeIII	GGCC	1 cut(s)	255
HgaI	GACGC	1 cut(s)	291
Hin1II	CATG	8 cut(s)	171, 432, 456, 545, 565, 632, 755, 978
HindIII	AAGCTT	2 cut(s)	769, 792
HinfI	GANTC	2 cut(s)	511, 849
HphI	GGTGA	2 cut(s)	140, 692
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	9 cut(s)	79, 219, 307, 319, 712, 767, 790, 805, 1048
Hpy188III	TCNNGA	7 cut(s)	160, 517, 553, 644, 780, 853, 859
Hpy8I	GTNNAC	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	157, 166
HpyCH4III	ACNGT	3 cut(s)	100, 202, 959
HpyCH4IV	ACGT	3 cut(s)	567, 732, 1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 470
HpyF3I	CTNAG	7 cut(s)	123, 189, 216, 295, 447, 531, 1045
HpySE526I	ACGT	3 cut(s)	567, 732, 1050
Hsp92II	CATG	8 cut(s)	171, 432, 456, 545, 565, 632, 755, 978
KpnI	GGTACC	1 cut(s)	294
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	80, 119
Lsp1109I	GCAGC	1 cut(s)	1083
LweI	GCATC	3 cut(s)	451, 517, 1132
MaeI	CTAG	2 cut(s)	572, 1173
MaeII	ACGT	3 cut(s)	567, 732, 1050
MaeIII	GTNAC	6 cut(s)	91, 369, 631, 733, 925, 959
MboII	GAAGA	3 cut(s)	82, 232, 520
MfeI	CAATTG	2 cut(s)	269, 696
MflI	RGATCY	4 cut(s)	222, 707, 776, 875
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	8 cut(s)	240, 269, 537, 624, 696, 756, 831, 1165
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	285
MseI	TTAA	6 cut(s)	108, 234, 825, 1059, 1113, 1164
MslI	CAYNNNNRTG	1 cut(s)	914
MspR9I	CCNGG	1 cut(s)	747
MunI	CAATTG	2 cut(s)	269, 696
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	418, 470
NlaIII	CATG	8 cut(s)	171, 432, 456, 545, 565, 632, 755, 978
NlaIV	GGNNCC	5 cut(s)	213, 292, 391, 709, 838
NmuCI	GTSAC	1 cut(s)	959
PciSI	GCTCTTC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	511
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	1 cut(s)	1073
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PshBI	ATTAAT	1 cut(s)	1164
Psp124BI	GAGCTC	1 cut(s)	77
Psp1406I	AACGTT	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	5 cut(s)	213, 292, 391, 709, 838
PspPI	GGNCC	2 cut(s)	254, 743
PsuI	RGATCY	4 cut(s)	222, 707, 776, 875
PvuI	CGATCG	1 cut(s)	82
RsaI	GTAC	3 cut(s)	49, 292, 1019
RsaNI	GTAC	3 cut(s)	48, 291, 1018
RseI	CAYNNNNRTG	1 cut(s)	914
SacI	GAGCTC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	6 cut(s)	108, 234, 825, 1059, 1113, 1164
SatI	GCNGC	1 cut(s)	1072
Sau96I	GGNCC	2 cut(s)	254, 743
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	3 cut(s)	451, 517, 1132
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	4 cut(s)	515, 642, 1118, 1203
SmoI	CTYRAG	4 cut(s)	515, 642, 1118, 1203
Sse9I	AATT	8 cut(s)	240, 269, 537, 624, 696, 756, 831, 1165
SsiI	CCGC	1 cut(s)	741
SspI	AATATT	1 cut(s)	1162
SspMI	CTAG	2 cut(s)	572, 1173
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	745
TaaI	ACNGT	3 cut(s)	100, 202, 959
TaiI	ACGT	3 cut(s)	570, 735, 1053
TaqI	TCGA	4 cut(s)	39, 82, 313, 1126
TasI	AATT	8 cut(s)	240, 269, 537, 624, 696, 756, 831, 1165
TatI	WGTACW	2 cut(s)	47, 1017
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	6 cut(s)	108, 234, 825, 1059, 1113, 1164
Tru9I	TTAA	6 cut(s)	108, 234, 825, 1059, 1113, 1164
TscAI	CASTG	3 cut(s)	109, 347, 682
TseFI	GTSAC	1 cut(s)	959
TseI	GCWGC	1 cut(s)	1071
Tsp45I	GTSAC	1 cut(s)	959
TspDTI	ATGAA	4 cut(s)	530, 578, 617, 743
TspRI	CASTG	3 cut(s)	109, 347, 682
Van91I	CCANNNNNTGG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	743
VspI	ATTAAT	1 cut(s)	1164
XapI	RAATTY	2 cut(s)	537, 624
XspI	CTAG	2 cut(s)	572, 1173
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.