Rmu_ssc0000267.1_g000001

Polygalacturonase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000267.1
Physical Location & Seq
Forward (+)
1614 .. 6218
4605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000267.1_g000001.1.cds

Sequence Viewer

Length: 1275 bp
atgatgtcacttaaaaaatttcttctctcaatattcatcatcatcatcatcaatatcatctcttcaatttcatgtgatagaagtactaatttgcaagagaacacacttgaggattttgttgatgaagcatcaggtactggatatgattcccaagcgtatccttcatactggagcatgattgatgacagcaacgacaacttggaggacttgatcgagcaaagtactgatgatgtcctcactttgaagagctctgatcaagtggcagttaccacagtcagtgttcatgattttggagctaagggtgatggagaaactgatgacacagaggcgtttgtgaaggcatggaaggtagcttgttcgtctaagaatgcagctgttttggtggtgcctcagaagatctattggcttaaaccaattagattttcaggtccttgcttatctcaattgatggtgcagattgttggtaccttagaagcgtcggatgatcgatctgacttccgccaagatggtaaacactggcttatttttgatagtgttcggaagttactgcttgatggtggtggaaccatcaatggcaatggcaaggaatggtggcagaactcatgcaaaatcaataaatctaagagagagaagtcatcagaaaccttgtcggactccggtgaccagtggctggccgaggactctggtgacggactccggcgaccggtcacaggaatctcgaatccggctaccagactggtggttggattcccgcgtctgaatttattatcggcgacgagatgtaggtctggctcgtcacggtctgcgtcgaggaactctggaggtcatggtttgatgaggaacaatcgaacaaatcttagaagttttgatcttttgttcaacgacttcgccaactccggctgggatcggttgttcagaagctttgacggtgggctcgagatcgaaaaaaatggcgcgtgggacatgcttgccggggccggtctcggagaagaaggtgttgaaagctacccgaacttaggccgactcttaacttcagtacccgactatgcaaaactatcactttggtaccccaagtttgaagcccgacccaagaacggtttggattttcggttttgtggactgaagagaaacgatgtcgtcgacgaccaccaacaaagccagactggcgtatgtccaacaagccctgcagagcaatgtgaagccggtgttcatcaaggtcaacgatctcaagcccagatcggtgtctcaacacctcccccagactcaaatctctga

Protein Analysis

424

Amino Acids

46.7

Weight (kDa)

5.1

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 464, 1065
AccB1I GGYRCC 3 cut(s) 385, 464, 1065
AccB7I CCANNNNNTGG 1 cut(s) 670
AccI GTMKAC 1 cut(s) 1140
AccII CGCG 2 cut(s) 754, 956
AciI CCGC 2 cut(s) 499, 752
AclWI GGATC 1 cut(s) 912
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 2 cut(s) 17, 760
AcuI CTGAAG 2 cut(s) 1017, 1142
AfaI GTAC 6 cut(s) 85, 136, 223, 466, 1038, 1067
AfiI CCNNNNNNNGG 5 cut(s) 670, 703, 710, 1016, 1094
AgeI ACCGGT 1 cut(s) 703
AgsI TTSAA 5 cut(s) 66, 244, 880, 1001, 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AloI GAACNNNNNNTCC 2 cut(s) 896, 928
AluBI AGCT 6 cut(s) 249, 296, 353, 374, 921, 1005
AluI AGCT 6 cut(s) 249, 296, 353, 374, 921, 1005
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 986, 1249
AlwI GGATC 1 cut(s) 912
AlwNI CAGNNNCTG 2 cut(s) 137, 670
Ama87I CYCGRG 1 cut(s) 935
AoxI GGCC 3 cut(s) 672, 975, 1018
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 17, 760
AsiGI ACCGGT 1 cut(s) 703
Asp718I GGTACC 2 cut(s) 464, 1065
AspLEI GCGC 1 cut(s) 956
AspS9I GGNCC 2 cut(s) 428, 975
AsuC2I CCSGG 1 cut(s) 973
AsuHPI GGTGA 3 cut(s) 314, 671, 698
AvaI CYCGRG 1 cut(s) 935
AvaII GGWCC 1 cut(s) 428
BaeI ACNNNNGTAYC 4 cut(s) 1020, 1049, 1053, 1082
BanI GGYRCC 3 cut(s) 385, 464, 1065
BanII GRGCYC 2 cut(s) 251, 936
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 383
BccI CCATC 5 cut(s) 299, 442, 500, 548, 575
BciVI GTATCC 1 cut(s) 168
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 973
BcoDI GTCTC 2 cut(s) 986, 1249
BfmI CTRYAG 1 cut(s) 1185
BfuI GTATCC 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 1164
BglII AGATCT 1 cut(s) 396
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmcAI AGTACT 2 cut(s) 85, 223
Bme1390I CCNGG 1 cut(s) 973
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 935
BmgT120I GGNCC 2 cut(s) 428, 975
BmiI GGNNCC 5 cut(s) 387, 466, 565, 976, 1067
BmrFI CCNGG 1 cut(s) 973
BmsI GCATC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 190, 840
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 128, 1212
BpuMI CCSGG 1 cut(s) 973
Bsa29I ATCGAT 1 cut(s) 487
BsaI GGTCTC 1 cut(s) 986
BsaJI CCNNGG 2 cut(s) 675, 972
BsaWI WCCGGW 2 cut(s) 656, 703
Bsc4I CCNNNNNNNGG 5 cut(s) 670, 703, 710, 1016, 1094
Bse118I RCCGGY 3 cut(s) 703, 977, 1202
Bse1I ACTGG 6 cut(s) 142, 173, 521, 664, 741, 1168
Bse3DI GCAATG 2 cut(s) 583, 1199
BseCI ATCGAT 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 675, 972
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 5 cut(s) 670, 703, 710, 1016, 1094
BseMI GCAATG 2 cut(s) 583, 1199
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 6 cut(s) 142, 173, 521, 664, 741, 1168
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 900
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 2 cut(s) 754, 956
Bsh1285I CGRYCG 1 cut(s) 704
BshFI GGCC 3 cut(s) 674, 977, 1020
BshNI GGYRCC 3 cut(s) 385, 464, 1065
BshTI ACCGGT 1 cut(s) 703
BshVI ATCGAT 1 cut(s) 487
BsiEI CGRYCG 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 935
BsiSI CCGG 8 cut(s) 657, 697, 704, 725, 897, 972, 978, 1203
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 5 cut(s) 670, 703, 710, 1016, 1094
BsmAI GTCTC 2 cut(s) 986, 1249
BsmFI GGGAC 1 cut(s) 974
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 3 cut(s) 674, 977, 1020
Bso31I GGTCTC 1 cut(s) 986
BsoBI CYCGRG 1 cut(s) 935
Bsp1286I GDGCHC 2 cut(s) 251, 936
BspACI CCGC 2 cut(s) 499, 752
BspANI GGCC 3 cut(s) 674, 977, 1020
BspCNI CTCAG 1 cut(s) 403
BspDI ATCGAT 1 cut(s) 487
BspFNI CGCG 2 cut(s) 754, 956
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 5 cut(s) 387, 466, 565, 976, 1067
BspMAI CTGCAG 1 cut(s) 1189
BspPI GGATC 1 cut(s) 912
BspQI GCTCTTC 1 cut(s) 239
BspT107I GGYRCC 3 cut(s) 385, 464, 1065
BspTNI GGTCTC 1 cut(s) 986
BsrDI GCAATG 2 cut(s) 583, 1199
BsrFI RCCGGY 3 cut(s) 703, 977, 1202
BsrI ACTGG 6 cut(s) 142, 173, 521, 664, 741, 1168
BssAI RCCGGY 3 cut(s) 703, 977, 1202
BssECI CCNNGG 2 cut(s) 675, 972
Bst4CI ACNGT 4 cut(s) 274, 801, 929, 1097
Bst6I CTCTTC 3 cut(s) 67, 239, 1118
BstC8I GCNNGC 2 cut(s) 672, 969
BstDEI CTNAG 7 cut(s) 297, 363, 390, 469, 621, 857, 1015
BstEII GGTNACC 1 cut(s) 659
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 2 cut(s) 754, 956
BstHHI GCGC 1 cut(s) 956
BstMAI GTCTC 2 cut(s) 986, 1249
BstMCI CGRYCG 1 cut(s) 704
BstMWI GCNNNNNNNGC 1 cut(s) 1164
BstNSI RCATGY 1 cut(s) 967
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 971
BstSFI CTRYAG 1 cut(s) 1185
BstUI CGCG 2 cut(s) 754, 956
BstV1I GCAGC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 396
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 396
Bsu15I ATCGAT 1 cut(s) 487
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 674, 977, 1020
BsuTUI ATCGAT 1 cut(s) 487
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 283, 514, 671
Cac8I GCNNGC 2 cut(s) 672, 969
CaiI CAGNNNCTG 2 cut(s) 137, 670
CciI TCATGA 1 cut(s) 283
CfoI GCGC 1 cut(s) 956
Cfr10I RCCGGY 3 cut(s) 703, 977, 1202
Cfr13I GGNCC 2 cut(s) 428, 975
ClaI ATCGAT 1 cut(s) 487
CseI GACGC 3 cut(s) 465, 743, 795
Csp6I GTAC 6 cut(s) 84, 135, 222, 465, 1037, 1066
CspAI ACCGGT 1 cut(s) 703
CviAII CATG 7 cut(s) 72, 175, 284, 342, 603, 827, 964
CviQI GTAC 6 cut(s) 84, 135, 222, 465, 1037, 1066
DdeI CTNAG 7 cut(s) 297, 363, 390, 469, 621, 857, 1015
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 3 cut(s) 67, 239, 1118
EarI CTCTTC 3 cut(s) 67, 239, 1118
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 249
Eco24I GRGCYC 2 cut(s) 251, 936
Eco31I GGTCTC 1 cut(s) 986
Eco47I GGWCC 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 249
Eco57I CTGAAG 2 cut(s) 1017, 1142
Eco88I CYCGRG 1 cut(s) 935
Eco91I GGTNACC 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 428
EcoO65I GGTNACC 1 cut(s) 659
EcoT38I GRGCYC 2 cut(s) 251, 936
FaeI CATG 7 cut(s) 75, 178, 287, 345, 606, 830, 967
FaqI GGGAC 1 cut(s) 974
FatI CATG 7 cut(s) 71, 174, 283, 341, 602, 826, 963
FauI CCCGC 1 cut(s) 759
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 1140
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 2 cut(s) 251, 936
Fsp4HI GCNGC 1 cut(s) 372
GlaI GCGC 1 cut(s) 955
GluI GCNGC 1 cut(s) 372
GsaI CCCAGC 1 cut(s) 904
GsuI CTGGAG 2 cut(s) 190, 840
HaeIII GGCC 3 cut(s) 674, 977, 1020
HapII CCGG 8 cut(s) 657, 697, 704, 725, 897, 972, 978, 1203
HgaI GACGC 3 cut(s) 465, 743, 795
HhaI GCGC 1 cut(s) 956
Hin1II CATG 7 cut(s) 75, 178, 287, 345, 606, 830, 967
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HincII GTYRAC 2 cut(s) 1141, 1220
HindII GTYRAC 2 cut(s) 1141, 1220
HindIII AAGCTT 1 cut(s) 919
HinfI GANTC 9 cut(s) 146, 653, 680, 693, 714, 721, 747, 1023, 1262
HpaII CCGG 8 cut(s) 657, 697, 704, 725, 897, 972, 978, 1203
HphI GGTGA 3 cut(s) 314, 671, 698
Hpy166II GTNNAC 4 cut(s) 512, 1118, 1141, 1220
Hpy188III TCNNGA 4 cut(s) 284, 718, 819, 937
Hpy8I GTNNAC 4 cut(s) 512, 1118, 1141, 1220
Hpy99I CGWCG 5 cut(s) 481, 778, 811, 1142, 1145
HpyAV CCTTC 4 cut(s) 171, 331, 340, 986
HpyCH4III ACNGT 4 cut(s) 274, 801, 929, 1097
HpyCH4V TGCA 6 cut(s) 94, 371, 454, 606, 1049, 1187
HpyF10VI GCNNNNNNNGC 1 cut(s) 1164
HpyF3I CTNAG 7 cut(s) 297, 363, 390, 469, 621, 857, 1015
Hsp92II CATG 7 cut(s) 75, 178, 287, 345, 606, 830, 967
HspAI GCGC 1 cut(s) 954
KpnI GGTACC 2 cut(s) 468, 1069
Ksp22I TGATCA 1 cut(s) 253
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 2 cut(s) 171, 293
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 1 cut(s) 137
MaeIII GTNAC 7 cut(s) 6, 265, 543, 659, 686, 706, 795
MboII GAAGA 6 cut(s) 14, 54, 256, 406, 1001, 1135
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 2 cut(s) 251, 936
MluCI AATT 6 cut(s) 17, 66, 88, 414, 443, 760
MlyI GAGTC 5 cut(s) 647, 674, 687, 1017, 1256
MmeI TCCRAC 4 cut(s) 459, 630, 724, 1199
MseI TTAA 3 cut(s) 12, 408, 1028
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 8 cut(s) 657, 697, 704, 725, 897, 972, 978, 1203
MspR9I CCNGG 1 cut(s) 973
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 373
MvnI CGCG 2 cut(s) 754, 956
MwoI GCNNNNNNNGC 1 cut(s) 1164
NciI CCSGG 1 cut(s) 973
NlaIII CATG 7 cut(s) 75, 178, 287, 345, 606, 830, 967
NlaIV GGNNCC 5 cut(s) 387, 466, 565, 976, 1067
NmeAIII GCCGAG 1 cut(s) 700
NmuCI GTSAC 5 cut(s) 6, 659, 686, 706, 795
NspI RCATGY 1 cut(s) 967
PaeR7I CTCGAG 1 cut(s) 935
PagI TCATGA 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 2 cut(s) 933, 1137
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 4 cut(s) 146, 714, 721, 747
PflMI CCANNNNNTGG 1 cut(s) 670
PinAI ACCGGT 1 cut(s) 703
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 5 cut(s) 647, 674, 687, 1017, 1256
PpsI GAGTC 5 cut(s) 647, 674, 687, 1017, 1256
PpuMI RGGWCCY 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 428
PspEI GGTNACC 1 cut(s) 659
PspFI CCCAGC 1 cut(s) 900
PspN4I GGNNCC 5 cut(s) 387, 466, 565, 976, 1067
PspPI GGNCC 2 cut(s) 428, 975
PspPPI RGGWCCY 1 cut(s) 428
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 2 cut(s) 137, 670
PsuI RGATCY 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 6 cut(s) 85, 136, 223, 466, 1038, 1067
RsaNI GTAC 6 cut(s) 84, 135, 222, 465, 1037, 1066
SacI GAGCTC 1 cut(s) 251
SalI GTCGAC 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 3 cut(s) 12, 408, 1028
SatI GCNGC 1 cut(s) 372
Sau96I GGNCC 2 cut(s) 428, 975
ScaI AGTACT 2 cut(s) 85, 223
SchI GAGTC 5 cut(s) 647, 674, 687, 1017, 1256
ScrFI CCNGG 1 cut(s) 973
SduI GDGCHC 2 cut(s) 251, 936
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 1 cut(s) 1185
Sfr274I CTCGAG 1 cut(s) 935
SgrDI CGTCGACG 1 cut(s) 1139
SinI GGWCC 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 935
SmlI CTYRAG 3 cut(s) 107, 935, 1227
SmoI CTYRAG 3 cut(s) 107, 935, 1227
Sse9I AATT 6 cut(s) 17, 66, 88, 414, 443, 760
SsiI CCGC 2 cut(s) 499, 752
SspI AATATT 1 cut(s) 33
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 971
TaaI ACNGT 4 cut(s) 274, 801, 929, 1097
TaqI TCGA 8 cut(s) 213, 487, 719, 809, 847, 936, 942, 1140
TasI AATT 6 cut(s) 17, 66, 88, 414, 443, 760
TatI WGTACW 2 cut(s) 83, 221
TfiI GAWTC 4 cut(s) 146, 714, 721, 747
Tru1I TTAA 3 cut(s) 12, 408, 1028
Tru9I TTAA 3 cut(s) 12, 408, 1028
TscAI CASTG 3 cut(s) 283, 521, 671
TseFI GTSAC 5 cut(s) 6, 659, 686, 706, 795
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 5 cut(s) 6, 659, 686, 706, 795
TspDTI ATGAA 6 cut(s) 25, 60, 138, 153, 272, 1199
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 3 cut(s) 283, 521, 671
Van91I CCANNNNNTGG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 2 cut(s) 17, 760
XceI RCATGY 1 cut(s) 967
XcmI CCANNNNNNNNNTGG 1 cut(s) 1096
XhoI CTCGAG 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 1140
ZrmI AGTACT 2 cut(s) 85, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.