Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Reverse (-)

10251448 .. 10254310

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G063900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGTCTCCTCAAGAAATTGATTTAATCCCATTCTTTTTCATCATCCTCTCTTTTGTTTCCTGCAGTTTACAAGACATCCCACTCAACAAGTATGTTGAGGAAGCATCTCAATTCGGTTCCCAAGCTTATCCTTCATACTTCGACATGATCGATGACGGCGGTAACTTCTCCAAAGACTTGATCAAGCAAAGTTCAGATGTCCTAAGTTTGAAGAGCTTCGACAAAGTGGATGGCACTTCAGCTTCGGTAAATGTCAATGATTTTGGAGCTGAGGGTGATGGAGAAACTGATGACACAGAGGCGTTTGCGAAGGCTTGGAAGGTAGCTTGTTCATCTAATGATGAAGCTGTTCTGGTGGTGCCTGAGAAGATCTATCACCTTAAACCAATTCGATTTTCAGGCCCTTGCAAATCTGAAGTTACGGTTCAGATTCTTGGAACCTTAAAAGCTTCTGATAATCGACCGGACTTCAGCCAAGATGGTAGACACTGGCTTGTCTTTGACACCGTCCGAAATTTATTGGTTGAAGGTGGTGGAGTCATCAATGGCAATGGGGAACAATGGTGGCAAAACTCATGCAAAATCAATAAATCTAAGCCCTGCAAGGACGCACCAACGGCACTCATCTTTCAGAAGTGCAAGAATTTGAGGGTGAATAACCTGAACATACAAGATGCGCAACAAATTCATGTGTCTTTCCAGAAGTGCATGAACGTTCAAGCTTCCAATCTCTCAATAATTGCACCAGAGAAAAGCCCCAATACTGATGGAATTCATGTCACAGATACGCAAAACATACTCATCACAAACTCTGTTATAGCCACAGGTGATGATTGTCTTTCAATTGTAAATGGATGCGAAAAGGTGCAAGCCACGAACATTACCTGTGGACCAGGTCATGGAATCAGTATTGGAAGCTTGGGATCTGGAAATTCAAAAGCTTATGTTTCAGAAATTACAGTCACTGGAGCTATACTTTCTGGAACCACAAATGGGGTTAGGATTAAGACATGGCAGGGAGGATCCGGAAGTGCAAGCAACATCACATTTGAGAACATTGAAATGCACAATGTTTCCAACCCGATAATTATCGACCAAAACTACTGCGACAACAGAAAGAAACCTTGCAAAGAACAGAGATCAGCAGTTCAAGTGGAAAATGTGGTGTACAAGAACATTAGCGGAACAAGTGCTTCGGATGTTGCGATAAAATTCGATTGCAGCAAGAGCTTCCCTTGTAAGGGGATTGTGTTGCAAGGTATTAATCTCCAGCGCGAAGGAGGGAAAGCAGCTAAAGCATCATGCAACCATGTCAATGTGAATAGCATAGGAGATGTTTCTCCACTTTGCCATTATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

454

Amino Acids

48.95

Weight (kDa)

5.56

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	899
AccI	GTMKAC	1 cut(s)	484
AccII	CGCG	1 cut(s)	1275
AccIII	TCCGGA	1 cut(s)	1025
AciI	CCGC	2 cut(s)	159, 1182
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	3 cut(s)	931, 1017, 1030
AcsI	RAATTY	6 cut(s)	514, 643, 684, 771, 931, 1211
AcuI	CTGAAG	3 cut(s)	222, 435, 454
AfaI	GTAC	1 cut(s)	1169
AfiI	CCNNNNNNNGG	4 cut(s)	899, 993, 1240, 1241
AgsI	TTSAA	7 cut(s)	211, 527, 719, 843, 936, 1061, 1151
AjnI	CCWGG	1 cut(s)	892
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	931, 1017, 1030
AlwNI	CAGNNNCTG	1 cut(s)	965
Aor13HI	TCCGGA	1 cut(s)	1025
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	1221, 1289
ApoI	RAATTY	6 cut(s)	514, 643, 684, 771, 931, 1211
AseI	ATTAAT	1 cut(s)	1263
Asp700I	GAANNNNTTC	2 cut(s)	215, 348
AspLEI	GCGC	2 cut(s)	679, 1275
AspS9I	GGNCC	2 cut(s)	401, 890
AsuHPI	GGTGA	4 cut(s)	287, 368, 664, 839
AvaII	GGWCC	1 cut(s)	890
BamHI	GGATCC	1 cut(s)	1022
BanI	GGYRCC	1 cut(s)	358
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	1233, 1301
BccI	CCATC	4 cut(s)	224, 272, 473, 761
BceAI	ACGGC	2 cut(s)	172, 633
BciT130I	CCWGG	1 cut(s)	894
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	61
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	2 cut(s)	1222, 1290
BlsI	GCNGC	2 cut(s)	1223, 1291
Bme1390I	CCNGG	1 cut(s)	894
Bme18I	GGWCC	1 cut(s)	890
BmgT120I	GGNCC	2 cut(s)	401, 890
BmiI	GGNNCC	5 cut(s)	118, 360, 439, 985, 1024
BmrFI	CCNGG	1 cut(s)	894
BmsI	GCATC	4 cut(s)	113, 664, 845, 1307
BpmI	CTGGAG	2 cut(s)	987, 1253
Bpu10I	CCTNAGC	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	1088
BsaWI	WCCGGW	2 cut(s)	463, 1025
Bsc4I	CCNNNNNNNGG	4 cut(s)	899, 993, 1240, 1241
Bse1I	ACTGG	2 cut(s)	494, 970
Bse3DI	GCAATG	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	1088
BseAI	TCCGGA	1 cut(s)	1025
BseBI	CCWGG	1 cut(s)	894
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	5 cut(s)	42, 75, 235, 860, 1204
BseJI	GATNNNNATC	1 cut(s)	1088
BseLI	CCNNNNNNNGG	4 cut(s)	899, 993, 1240, 1241
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	261, 354
BseNI	ACTGG	2 cut(s)	494, 970
BseXI	GCAGC	2 cut(s)	1233, 1301
Bsh1236I	CGCG	1 cut(s)	1275
Bsh1285I	CGRYCG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	402
BshNI	GGYRCC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	464, 1026
BslI	CCNNNNNNNGG	4 cut(s)	899, 993, 1240, 1241
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	1025
Bsp1407I	TGTACA	1 cut(s)	1167
Bsp143I	GATC	6 cut(s)	147, 180, 369, 923, 1022, 1139
BspACI	CCGC	2 cut(s)	159, 1182
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	262, 355
BspDI	ATCGAT	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	1025
BspFNI	CGCG	1 cut(s)	1275
BspLI	GGNNCC	5 cut(s)	118, 360, 439, 985, 1024
BspMAI	CTGCAG	1 cut(s)	65
BspPI	GGATC	3 cut(s)	931, 1017, 1030
BspQI	GCTCTTC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	556
BsrGI	TGTACA	1 cut(s)	1167
BsrI	ACTGG	2 cut(s)	494, 970
BssMI	GATC	6 cut(s)	147, 180, 369, 923, 1022, 1139
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	3 cut(s)	424, 508, 961
Bst6I	CTCTTC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	1167
BstC8I	GCNNGC	2 cut(s)	870, 1036
BstDEI	CTNAG	4 cut(s)	203, 270, 363, 594
BstF5I	GGATG	5 cut(s)	42, 75, 235, 860, 1204
BstFNI	CGCG	1 cut(s)	1275
BstHHI	GCGC	2 cut(s)	679, 1275
BstKTI	GATC	6 cut(s)	150, 183, 372, 926, 1025, 1142
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	147, 180, 369, 923, 1022, 1139
BstMCI	CGRYCG	1 cut(s)	464
BstMWI	GCNNNNNNNGC	3 cut(s)	617, 1227, 1295
BstNI	CCWGG	1 cut(s)	894
BstSCI	CCNGG	1 cut(s)	892
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	1275
BstV1I	GCAGC	2 cut(s)	1233, 1301
BstX2I	RGATCY	3 cut(s)	369, 923, 1022
BstYI	RGATCY	3 cut(s)	369, 923, 1022
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	5 cut(s)	42, 75, 235, 860, 1204
BtsIMutI	CAGTG	2 cut(s)	487, 963
Cac8I	GCNNGC	2 cut(s)	870, 1036
CaiI	CAGNNNCTG	1 cut(s)	965
CfoI	GCGC	2 cut(s)	679, 1275
Cfr13I	GGNCC	2 cut(s)	401, 890
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	617
CsiI	ACCWGGT	1 cut(s)	892
Csp6I	GTAC	1 cut(s)	1168
CviAII	CATG	9 cut(s)	145, 576, 689, 709, 776, 899, 1011, 1302, 1310
CviQI	GTAC	1 cut(s)	1168
DdeI	CTNAG	4 cut(s)	203, 270, 363, 594
DpnI	GATC	6 cut(s)	149, 182, 371, 925, 1024, 1141
DpnII	GATC	6 cut(s)	147, 180, 369, 923, 1022, 1139
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	890
Eco57I	CTGAAG	3 cut(s)	222, 435, 454
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	771
EcoRII	CCWGG	1 cut(s)	892
FaeI	CATG	9 cut(s)	148, 579, 692, 712, 779, 902, 1014, 1305, 1313
FatI	CATG	9 cut(s)	144, 575, 688, 708, 775, 898, 1010, 1301, 1309
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	2 cut(s)	1222, 1290
FokI	GGATG	5 cut(s)	29, 62, 242, 867, 1211
Fsp4HI	GCNGC	2 cut(s)	1222, 1290
FspI	TGCGCA	1 cut(s)	678
GlaI	GCGC	2 cut(s)	678, 1274
GluI	GCNGC	2 cut(s)	1222, 1290
GsuI	CTGGAG	2 cut(s)	987, 1253
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	2 cut(s)	464, 1026
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	2 cut(s)	679, 1275
Hin1II	CATG	9 cut(s)	148, 579, 692, 712, 779, 902, 1014, 1305, 1313
Hin6I	GCGC	2 cut(s)	677, 1273
HinP1I	GCGC	2 cut(s)	677, 1273
HindIII	AAGCTT	5 cut(s)	123, 447, 720, 916, 939
HinfI	GANTC	3 cut(s)	430, 537, 903
HpaII	CCGG	2 cut(s)	464, 1026
HphI	GGTGA	4 cut(s)	287, 368, 664, 839
Hpy166II	GTNNAC	4 cut(s)	68, 485, 890, 1168
Hpy188I	TCNGA	8 cut(s)	196, 415, 429, 454, 512, 633, 952, 1198
Hpy188III	TCNNGA	5 cut(s)	11, 700, 927, 981, 1026
Hpy8I	GTNNAC	4 cut(s)	68, 485, 890, 1168
HpyAV	CCTTC	5 cut(s)	141, 304, 313, 521, 1271
HpyCH4III	ACNGT	3 cut(s)	424, 508, 961
HpyCH4IV	ACGT	1 cut(s)	714
HpyF10VI	GCNNNNNNNGC	3 cut(s)	617, 1227, 1295
HpyF3I	CTNAG	4 cut(s)	203, 270, 363, 594
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	9 cut(s)	148, 579, 692, 712, 779, 902, 1014, 1305, 1313
HspAI	GCGC	2 cut(s)	677, 1273
Kpn2I	TCCGGA	1 cut(s)	1025
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	6 cut(s)	147, 180, 369, 923, 1022, 1139
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	2 cut(s)	266, 968
Lsp1109I	GCAGC	2 cut(s)	1233, 1301
LweI	GCATC	4 cut(s)	113, 664, 845, 1307
MabI	ACCWGGT	1 cut(s)	892
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	4 cut(s)	161, 418, 778, 961
MalI	GATC	6 cut(s)	149, 182, 371, 925, 1024, 1141
MboI	GATC	6 cut(s)	147, 180, 369, 923, 1022, 1139
MboII	GAAGA	2 cut(s)	223, 379
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	3 cut(s)	369, 923, 1022
MlyI	GAGTC	1 cut(s)	546
MmeI	TCCRAC	1 cut(s)	1101
MnlI	CCTC	8 cut(s)	18, 56, 91, 265, 292, 642, 1013, 1274
MroI	TCCGGA	1 cut(s)	1025
MroXI	GAANNNNTTC	2 cut(s)	215, 348
MseI	TTAA	5 cut(s)	23, 381, 443, 1005, 1263
MslI	CAYNNNNRTG	2 cut(s)	1061, 1314
MspI	CCGG	2 cut(s)	464, 1026
MspR9I	CCNGG	1 cut(s)	894
MunI	CAATTG	1 cut(s)	843
MvaI	CCWGG	1 cut(s)	894
MvnI	CGCG	1 cut(s)	1275
MwoI	GCNNNNNNNGC	3 cut(s)	617, 1227, 1295
NdeII	GATC	6 cut(s)	147, 180, 369, 923, 1022, 1139
NlaIII	CATG	9 cut(s)	148, 579, 692, 712, 779, 902, 1014, 1305, 1313
NlaIV	GGNNCC	5 cut(s)	118, 360, 439, 985, 1024
NmuCI	GTSAC	2 cut(s)	778, 961
NsbI	TGCGCA	1 cut(s)	678
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 1202
PdmI	GAANNNNTTC	2 cut(s)	215, 348
PfeI	GAWTC	2 cut(s)	430, 903
PflFI	GACNNNGTC	2 cut(s)	506, 894
PflMI	CCANNNNNTGG	1 cut(s)	899
PkrI	GCNGC	2 cut(s)	1223, 1291
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PshBI	ATTAAT	1 cut(s)	1263
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	5 cut(s)	118, 360, 439, 985, 1024
PspPI	GGNCC	2 cut(s)	401, 890
PstI	CTGCAG	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	965
PsuI	RGATCY	3 cut(s)	369, 923, 1022
PsyI	GACNNNGTC	2 cut(s)	506, 894
RsaI	GTAC	1 cut(s)	1169
RsaNI	GTAC	1 cut(s)	1168
RseI	CAYNNNNRTG	2 cut(s)	1061, 1314
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	5 cut(s)	23, 381, 443, 1005, 1263
SatI	GCNGC	2 cut(s)	1222, 1290
Sau3AI	GATC	6 cut(s)	147, 180, 369, 923, 1022, 1139
Sau96I	GGNCC	2 cut(s)	401, 890
SchI	GAGTC	1 cut(s)	546
ScrFI	CCNGG	1 cut(s)	894
SexAI	ACCWGGT	1 cut(s)	892
SfaNI	GCATC	4 cut(s)	113, 664, 845, 1307
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	890
SmiMI	CAYNNNNRTG	2 cut(s)	1061, 1314
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SsiI	CCGC	2 cut(s)	159, 1182
StyD4I	CCNGG	1 cut(s)	892
TaaI	ACNGT	3 cut(s)	424, 508, 961
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	7 cut(s)	141, 150, 219, 391, 460, 1092, 1215
TatI	WGTACW	1 cut(s)	1167
TfiI	GAWTC	2 cut(s)	430, 903
Tru1I	TTAA	5 cut(s)	23, 381, 443, 1005, 1263
Tru9I	TTAA	5 cut(s)	23, 381, 443, 1005, 1263
TscAI	CASTG	2 cut(s)	494, 970
TseFI	GTSAC	2 cut(s)	778, 961
TseI	GCWGC	2 cut(s)	1221, 1289
Tsp45I	GTSAC	2 cut(s)	778, 961
TspDTI	ATGAA	7 cut(s)	28, 123, 321, 357, 677, 725, 764
TspRI	CASTG	2 cut(s)	494, 970
Tth111I	GACNNNGTC	2 cut(s)	506, 894
Van91I	CCANNNNNTGG	1 cut(s)	899
VpaK11BI	GGWCC	1 cut(s)	890
VspI	ATTAAT	1 cut(s)	1263
XapI	RAATTY	6 cut(s)	514, 643, 684, 771, 931, 1211
XmiI	GTMKAC	1 cut(s)	484
XmnI	GAANNNNTTC	2 cut(s)	215, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.