Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Reverse (-)

20627116 .. 20629157

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCTCTAATGAGACCTTTATTGCTGTTCTGTGTTCTTCTTGTTCTCTCTCTGAGTTCTTCATGTTATAGTAGCAGATTCCAAGAGAACTCATTACTTCATAGTTATGTTGATGATGCTCATCGTGAAGCAACTGGTTTTTATGGTTCCGGGGCAGCTCATCCTTCGTACATGAGCATCCTTGAGAATCTCAAGTTCTCTGACCCGATCAATCTCCGAACTCGGCTCTTCAGCACATCATCTTCCGTTAAAAAGGTTAGCGTCGATGATTTTGGCGCTAAAGGGAATGGTGCTGCTGATGACACACAGGCATTCCAAAAGGCATGGAAGACAGCTTGTAGTTCCAGTGGGGCACTAGTTCTTCTGGTGCCAAAGAAGAACTATCTTGTTAAGCCAATCACATTTTCAGGGCCATGCAAATCTCAGCTTACAATGCAGCCCTGCGGGACGCAAGCACCTACGGCTGTGACCTTCTACCAATGCAATAACTTGGTGGTGAAGAATCTGAAGTTCCAAGACGCACAGCAAATGCACGTCACTTTCGAAGAGTGCACTAATGTTCAAGCTTTGTATCTAACAGTAACTGCGCCGGAGACTAGTCCCAACACTGACGGTATTCATGTTGCCAATACCCAAAACATCACAATCTCAAACAGTAATATCGGAACAGGTGATGATTGCATTTCAATTGTAAGTGGATCCCAAAATGTGCAAGCCTCCAGTATTACCTGTGGACCTGGCCATGGAATCAGTATCGGTAGCTTGGGGAAAGGAGGGTCTGAAGACCATGTTTCGCAAGTAACAGTGAACGGAGCTAAGATTTCAGGAACCACGAATGGAGTGAGGATCAAAACATGGCAAGGAGGCTCAGGAATGGCAAGCAACATTGCTTTTCAAAACATAGAAATGAATGACGTGACTAACCCCATAATCATAGACCAAAACTACTGTGACACCAGTGACGAAGGACAATGCAAACAACAGAGCAAGGCAGTGAAGGTACAAAATGTGTTGTACCAAAACATCAGAGGGACAAGCACTTCAAAAGATGCCATAACATTTGATTGTAGCAAGAGCATTCCATGTCAGGGAATTGTGCTGCAAAATGTTCAACTCGACAAAGGAGCAGAATGCAGCAATGTTAATCTGGCTTACAAAGGAAATGTCTCCCCTCGATGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

394

Amino Acids

42.08

Weight (kDa)

7.45

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	86 - 287	4.4e-10	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	150 - 382	7.5e-79	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	3 cut(s)	693, 706, 854
AcoI	YGGCCR	1 cut(s)	739
AcuI	CTGAAG	3 cut(s)	214, 527, 801
AfaI	GTAC	3 cut(s)	170, 1002, 1016
AfiI	CCNNNNNNNGG	2 cut(s)	743, 1088
AgsI	TTSAA	5 cut(s)	563, 687, 896, 1044, 1112
AhlI	ACTAGT	2 cut(s)	355, 596
AjiI	CACGTC	2 cut(s)	535, 916
AjnI	CCWGG	1 cut(s)	736
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AluBI	AGCT	6 cut(s)	158, 335, 427, 566, 762, 815
AluI	AGCT	6 cut(s)	158, 335, 427, 566, 762, 815
Alw21I	GWGCWC	1 cut(s)	554
Alw26I	GTCTC	3 cut(s)	7, 587, 1171
Alw44I	GTGCAC	1 cut(s)	550
AlwI	GGATC	3 cut(s)	693, 706, 854
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	2 cut(s)	410, 739
ApaLI	GTGCAC	1 cut(s)	550
ApeKI	GCWGC	5 cut(s)	155, 293, 436, 1099, 1134
ArsI	GACNNNNNNTTYG	2 cut(s)	1149, 1181
AspLEI	GCGC	2 cut(s)	278, 589
AspS9I	GGNCC	2 cut(s)	410, 734
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	508, 683
AsuII	TTCGAA	1 cut(s)	543
AvaII	GGWCC	1 cut(s)	734
BaeGI	GKGCMC	2 cut(s)	355, 554
BalI	TGGCCA	1 cut(s)	741
BamHI	GGATCC	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	335, 789
Bbv12I	GWGCWC	1 cut(s)	554
BbvI	GCAGC	5 cut(s)	167, 280, 448, 1086, 1146
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	738
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	7, 587, 1171
BcuI	ACTAGT	2 cut(s)	355, 596
BfaI	CTAG	2 cut(s)	356, 597
BfoI	RGCGCY	1 cut(s)	279
BisI	GCNGC	5 cut(s)	156, 294, 437, 1100, 1135
BlsI	GCNGC	5 cut(s)	157, 295, 438, 1101, 1136
Bme1390I	CCNGG	2 cut(s)	151, 738
Bme18I	GGWCC	1 cut(s)	734
BmgBI	CACGTC	2 cut(s)	535, 916
BmgT120I	GGNCC	2 cut(s)	410, 734
BmiI	GGNNCC	4 cut(s)	148, 369, 700, 829
BmrFI	CCNGG	2 cut(s)	151, 738
BmsI	GCATC	3 cut(s)	106, 186, 1039
BpiI	GAAGAC	2 cut(s)	335, 789
BpmI	CTGGAG	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	868
Bpu14I	TTCGAA	1 cut(s)	543
BpuEI	CTTGAG	2 cut(s)	176, 203
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	150, 742
Bsc4I	CCNNNNNNNGG	2 cut(s)	743, 1088
Bse1I	ACTGG	4 cut(s)	139, 345, 720, 957
Bse3DI	GCAATG	2 cut(s)	885, 1144
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	150, 742
BseGI	GGATG	2 cut(s)	160, 177
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	743, 1088
BseMI	GCAATG	2 cut(s)	885, 1144
BseMII	CTCAG	3 cut(s)	44, 437, 882
BseNI	ACTGG	4 cut(s)	139, 345, 720, 957
BseSI	GKGCMC	2 cut(s)	355, 554
BseXI	GCAGC	5 cut(s)	167, 280, 448, 1086, 1146
BshFI	GGCC	2 cut(s)	412, 741
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	554
BsiSI	CCGG	2 cut(s)	150, 590
BslFI	GGGAC	3 cut(s)	460, 585, 1045
BslI	CCNNNNNNNGG	2 cut(s)	743, 1088
BsmAI	GTCTC	3 cut(s)	7, 587, 1171
BsmFI	GGGAC	3 cut(s)	460, 585, 1045
BsmI	GAATGC	3 cut(s)	311, 1077, 1136
BsnI	GGCC	2 cut(s)	412, 741
Bso31I	GGTCTC	1 cut(s)	7
Bsp119I	TTCGAA	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	355, 554
Bsp143I	GATC	3 cut(s)	207, 698, 846
Bsp19I	CCATGG	1 cut(s)	742
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	2 cut(s)	412, 741
BspCNI	CTCAG	3 cut(s)	45, 436, 881
BspLI	GGNNCC	4 cut(s)	148, 369, 700, 829
BspPI	GGATC	3 cut(s)	693, 706, 854
BspQI	GCTCTTC	1 cut(s)	233
BspT104I	TTCGAA	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	7
BsrDI	GCAATG	2 cut(s)	885, 1144
BsrI	ACTGG	4 cut(s)	139, 345, 720, 957
BssECI	CCNNGG	2 cut(s)	150, 742
BssMI	GATC	3 cut(s)	207, 698, 846
BssT1I	CCWWGG	1 cut(s)	742
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	5 cut(s)	580, 614, 656, 805, 950
Bst6I	CTCTTC	2 cut(s)	233, 540
BstBI	TTCGAA	1 cut(s)	543
BstC8I	GCNNGC	3 cut(s)	453, 714, 880
BstDEI	CTNAG	4 cut(s)	53, 423, 816, 868
BstDSI	CCRYGG	1 cut(s)	742
BstF5I	GGATG	2 cut(s)	160, 177
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	278, 589
BstKTI	GATC	3 cut(s)	210, 701, 849
BstMAI	GTCTC	3 cut(s)	7, 587, 1171
BstMBI	GATC	3 cut(s)	207, 698, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 461
BstNI	CCWGG	1 cut(s)	738
BstSCI	CCNGG	2 cut(s)	149, 736
BstSLI	GKGCMC	2 cut(s)	355, 554
BstV1I	GCAGC	5 cut(s)	167, 280, 448, 1086, 1146
BstV2I	GAAGAC	2 cut(s)	335, 789
BstX2I	RGATCY	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	698
BsuRI	GGCC	2 cut(s)	412, 741
BtgI	CCRYGG	1 cut(s)	742
BtrI	CACGTC	2 cut(s)	535, 916
BtsCI	GGATG	2 cut(s)	160, 177
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	5 cut(s)	352, 606, 810, 964, 999
Cac8I	GCNNGC	3 cut(s)	453, 714, 880
CaiI	CAGNNNCTG	1 cut(s)	584
CfoI	GCGC	2 cut(s)	278, 589
Cfr13I	GGNCC	2 cut(s)	410, 734
CseI	GACGC	3 cut(s)	250, 457, 527
Csp6I	GTAC	3 cut(s)	169, 1001, 1015
CviAII	CATG	9 cut(s)	63, 172, 324, 414, 620, 743, 788, 855, 1083
CviQI	GTAC	3 cut(s)	169, 1001, 1015
DdeI	CTNAG	4 cut(s)	53, 423, 816, 868
DpnI	GATC	3 cut(s)	209, 700, 848
DpnII	GATC	3 cut(s)	207, 698, 846
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	2 cut(s)	233, 540
EarI	CTCTTC	2 cut(s)	233, 540
Eco130I	CCWWGG	1 cut(s)	742
Eco31I	GGTCTC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	734
Eco57I	CTGAAG	3 cut(s)	214, 527, 801
EcoRII	CCWGG	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	742
FaeI	CATG	9 cut(s)	66, 175, 327, 417, 623, 746, 791, 858, 1086
FaqI	GGGAC	3 cut(s)	460, 585, 1045
FatI	CATG	9 cut(s)	62, 171, 323, 413, 619, 742, 787, 854, 1082
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	5 cut(s)	156, 294, 437, 1100, 1135
FokI	GGATG	2 cut(s)	147, 164
Fsp4HI	GCNGC	5 cut(s)	156, 294, 437, 1100, 1135
FspBI	CTAG	2 cut(s)	356, 597
GlaI	GCGC	2 cut(s)	277, 588
GluI	GCNGC	5 cut(s)	156, 294, 437, 1100, 1135
GsuI	CTGGAG	1 cut(s)	703
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	412, 741
HapII	CCGG	2 cut(s)	150, 590
HgaI	GACGC	3 cut(s)	250, 457, 527
HhaI	GCGC	2 cut(s)	278, 589
Hin1II	CATG	9 cut(s)	66, 175, 327, 417, 623, 746, 791, 858, 1086
Hin6I	GCGC	2 cut(s)	276, 587
HinP1I	GCGC	2 cut(s)	276, 587
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	4 cut(s)	78, 187, 502, 747
HpaII	CCGG	2 cut(s)	150, 590
HphI	GGTGA	2 cut(s)	508, 683
Hpy166II	GTNNAC	3 cut(s)	552, 734, 808
Hpy188I	TCNGA	7 cut(s)	54, 202, 218, 507, 665, 781, 1028
Hpy188III	TCNNGA	3 cut(s)	125, 825, 870
Hpy8I	GTNNAC	3 cut(s)	552, 734, 808
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	4 cut(s)	174, 481, 959, 991
HpyCH4III	ACNGT	5 cut(s)	580, 614, 656, 805, 950
HpyCH4IV	ACGT	2 cut(s)	534, 915
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 461
HpyF3I	CTNAG	4 cut(s)	53, 423, 816, 868
HpySE526I	ACGT	2 cut(s)	534, 915
Hsp92II	CATG	9 cut(s)	66, 175, 327, 417, 623, 746, 791, 858, 1086
HspAI	GCGC	2 cut(s)	276, 587
Kzo9I	GATC	3 cut(s)	207, 698, 846
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	812, 1124
Lsp1109I	GCAGC	5 cut(s)	167, 280, 448, 1086, 1146
LweI	GCATC	3 cut(s)	106, 186, 1039
MaeI	CTAG	2 cut(s)	356, 597
MaeII	ACGT	2 cut(s)	534, 915
MaeIII	GTNAC	7 cut(s)	466, 535, 580, 799, 916, 950, 959
MalI	GATC	3 cut(s)	209, 700, 848
MboI	GATC	3 cut(s)	207, 698, 846
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	1 cut(s)	698
MhlI	GDGCHC	2 cut(s)	355, 554
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	2 cut(s)	687, 1092
MluNI	TGGCCA	1 cut(s)	741
MnlI	CCTC	6 cut(s)	727, 767, 837, 857, 1022, 1182
Mox20I	TGGCCA	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	3 cut(s)	249, 390, 1143
MslI	CAYNNNNRTG	2 cut(s)	105, 905
Msp20I	TGGCCA	1 cut(s)	741
MspI	CCGG	2 cut(s)	150, 590
MspR9I	CCNGG	2 cut(s)	151, 738
MunI	CAATTG	1 cut(s)	687
Mva1269I	GAATGC	3 cut(s)	311, 1077, 1136
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	2 cut(s)	433, 461
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	742
NdeII	GATC	3 cut(s)	207, 698, 846
NlaIII	CATG	9 cut(s)	66, 175, 327, 417, 623, 746, 791, 858, 1086
NlaIV	GGNNCC	4 cut(s)	148, 369, 700, 829
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	5 cut(s)	466, 535, 916, 950, 959
NspV	TTCGAA	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	3 cut(s)	311, 1077, 1136
PfeI	GAWTC	4 cut(s)	78, 187, 502, 747
PkrI	GCNGC	5 cut(s)	157, 295, 438, 1101, 1136
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	4 cut(s)	148, 369, 700, 829
PspPI	GGNCC	2 cut(s)	410, 734
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	698
RsaI	GTAC	3 cut(s)	170, 1002, 1016
RsaNI	GTAC	3 cut(s)	169, 1001, 1015
RseI	CAYNNNNRTG	2 cut(s)	105, 905
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	249, 390, 1143
SatI	GCNGC	5 cut(s)	156, 294, 437, 1100, 1135
Sau3AI	GATC	3 cut(s)	207, 698, 846
Sau96I	GGNCC	2 cut(s)	410, 734
ScrFI	CCNGG	2 cut(s)	151, 738
SduI	GDGCHC	2 cut(s)	355, 554
SfaNI	GCATC	3 cut(s)	106, 186, 1039
SfuI	TTCGAA	1 cut(s)	543
SinI	GGWCC	1 cut(s)	734
SmiMI	CAYNNNNRTG	2 cut(s)	105, 905
SmlI	CTYRAG	2 cut(s)	182, 191
SmoI	CTYRAG	2 cut(s)	182, 191
SpeI	ACTAGT	2 cut(s)	355, 596
Sse9I	AATT	2 cut(s)	687, 1092
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	2 cut(s)	356, 597
StyD4I	CCNGG	2 cut(s)	149, 736
StyI	CCWWGG	1 cut(s)	742
TaaI	ACNGT	5 cut(s)	580, 614, 656, 805, 950
TaiI	ACGT	2 cut(s)	537, 918
TaqI	TCGA	4 cut(s)	264, 543, 1116, 1174
TasI	AATT	2 cut(s)	687, 1092
TfiI	GAWTC	4 cut(s)	78, 187, 502, 747
Tru1I	TTAA	3 cut(s)	249, 390, 1143
Tru9I	TTAA	3 cut(s)	249, 390, 1143
TscAI	CASTG	5 cut(s)	352, 613, 810, 964, 999
TseFI	GTSAC	5 cut(s)	466, 535, 916, 950, 959
TseI	GCWGC	5 cut(s)	155, 293, 436, 1099, 1134
Tsp45I	GTSAC	5 cut(s)	466, 535, 916, 950, 959
TspDTI	ATGAA	4 cut(s)	51, 89, 608, 923
TspGWI	ACGGA	2 cut(s)	235, 825
TspRI	CASTG	5 cut(s)	352, 613, 810, 964, 999
VneI	GTGCAC	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	734
XspI	CTAG	2 cut(s)	356, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.