Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Forward (+)

17641999 .. 17642858

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGCATCAGGACTTGGTCGAGCATAGTGCTCATGATGTCCTCAGTTTGAAGAGCTTCGATCAACTGGCCGCTACCACAGTCAATGTTAATGATTTTGGAGCTAAGGGTGATGGAGAAAATGATGACACAGAGAATGCAGCTGTTTTGGTGGTGCCTCAGAAGATCTATTGGCTTAAACCAGTTAGATTTTCAGGTCCTTGCTTATCTCAATTGATGGTGCAGGTTACAGTTCAAAGGATGTTTTTTGATTTTGGAGAATCAAACTTTCAGATTGTTGGTACCTTAGAAGCATCGGATAATCGAACTGACTTCAGCAAAGATGGTAAACATTGGCTTATCTTTGACAGTGTTCGCGATTTAGTGCGTGTTGGCAGTGGAGCCGTCAATGGCAATGGCCAACAATGGTGGCACAACTTGTTGGAAAGTATATTGGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

148

Amino Acids

16.42

Weight (kDa)

5.03

Isoelectric Point (pI)

15.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	48 - 139	4.8e-06	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	2 cut(s)	154, 281
AccII	CGCG	1 cut(s)	357
AciI	CCGC	1 cut(s)	72
AcoI	YGGCCR	2 cut(s)	69, 397
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	52, 236
AluBI	AGCT	3 cut(s)	57, 104, 143
AluI	AGCT	3 cut(s)	57, 104, 143
Alw21I	GWGCWC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	69, 397
ApeKI	GCWGC	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	197
BalI	TGGCCA	1 cut(s)	399
BanI	GGYRCC	2 cut(s)	154, 281
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	107, 211, 317
BceAI	ACGGC	1 cut(s)	368
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	2 cut(s)	72, 141
BlsI	GCNGC	2 cut(s)	73, 142
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	156, 283, 382
BmsI	GCATC	2 cut(s)	16, 302
Bpu10I	CCTNAGC	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	72, 182
Bse3DI	GCAATG	1 cut(s)	400
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	58, 173
BseNI	ACTGG	2 cut(s)	72, 182
BseXI	GCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	71, 399
BshNI	GGYRCC	2 cut(s)	154, 281
BsiHKAI	GWGCWC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	71, 399
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	61, 165
Bsp68I	TCGCGA	1 cut(s)	357
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	2 cut(s)	71, 399
BspCNI	CTCAG	2 cut(s)	57, 172
BspFNI	CGCG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	156, 283, 382
BspMI	ACCTGC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	47
BspT107I	GGYRCC	2 cut(s)	154, 281
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	72, 182
BssMI	GATC	2 cut(s)	61, 165
Bst4CI	ACNGT	3 cut(s)	82, 232, 350
Bst6I	CTCTTC	1 cut(s)	47
BstDEI	CTNAG	4 cut(s)	44, 105, 159, 286
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	2 cut(s)	64, 168
BstMBI	GATC	2 cut(s)	61, 165
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	71, 399
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	355, 382
BtuMI	TCGCGA	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	214
CciI	TCATGA	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	282
CspCI	CAANNNNNGTGG	2 cut(s)	389, 424
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	8 cut(s)	57, 71, 104, 143, 175, 337, 383, 399
CviKI_1	RGCY	8 cut(s)	57, 71, 104, 143, 175, 337, 383, 399
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	4 cut(s)	44, 105, 159, 286
DpnI	GATC	2 cut(s)	63, 167
DpnII	GATC	2 cut(s)	61, 165
EaeI	YGGCCR	2 cut(s)	69, 397
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	197
FaeI	CATG	1 cut(s)	38
FaiI	YATR	4 cut(s)	27, 36, 431, 442
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	72, 141
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	2 cut(s)	72, 141
GluI	GCNGC	2 cut(s)	72, 141
HaeIII	GGCC	2 cut(s)	71, 399
Hin1II	CATG	1 cut(s)	38
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	3 cut(s)	162, 273, 298
Hpy188III	TCNNGA	3 cut(s)	11, 35, 356
Hpy8I	GTNNAC	1 cut(s)	329
HpyCH4III	ACNGT	3 cut(s)	82, 232, 350
HpyCH4V	TGCA	2 cut(s)	140, 223
HpyF3I	CTNAG	4 cut(s)	44, 105, 159, 286
Hsp92II	CATG	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	61, 165
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	2 cut(s)	101, 380
LpnPI	CCDG	4 cut(s)	53, 180, 195, 209
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	2 cut(s)	16, 302
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	63, 167
MboI	GATC	2 cut(s)	61, 165
MboII	GAAGA	2 cut(s)	64, 175
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	1 cut(s)	212
MluNI	TGGCCA	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	2 cut(s)	53, 168
Mox20I	TGGCCA	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	2 cut(s)	90, 177
Msp20I	TGGCCA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	142
MvnI	CGCG	1 cut(s)	357
NdeII	GATC	2 cut(s)	61, 165
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	3 cut(s)	156, 283, 382
NruI	TCGCGA	1 cut(s)	357
PagI	TCATGA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	47
PctI	GAATGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	260
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	73, 142
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	156, 283, 382
PspPI	GGNCC	1 cut(s)	197
PspPPI	RGGWCCY	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	143
RruI	TCGCGA	1 cut(s)	357
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	90, 177
SatI	GCNGC	2 cut(s)	72, 141
Sau3AI	GATC	2 cut(s)	61, 165
Sau96I	GGNCC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	6 cut(s)	59, 106, 145, 199, 228, 287
SfaNI	GCATC	2 cut(s)	16, 302
SinI	GGWCC	1 cut(s)	197
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	82, 232, 350
TaqI	TCGA	3 cut(s)	21, 60, 304
TasI	AATT	1 cut(s)	212
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	90, 177
Tru9I	TTAA	2 cut(s)	90, 177
TscAI	CASTG	2 cut(s)	355, 382
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	355, 382
Tth111I	GACNNNGTC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.