Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Forward (+)

16996300 .. 16998852

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0193400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCGGTGGAGTCTAGATTCAGGCTTGAGAGGCCGTTTGACATCGCGGAGGCCTTTTCTCAAAGGCGATCTGGCTCGCTTGCGGTTCTAATCGATCAGCGCGTGGAGTCGTTGGAATCGCCGGCGAGGCGGAGGGCGTTAGCGACACCGGTGTATCAGAGACGGCTAGGGTTATGGGCTACAGGAGGTGATGGGCTCGAAAGGAGCAGAATGAGGACACCGAGAGCCCCGATTGGTCGAGAGAATGTGCTGCTGGCCGGAAGTTCTAGCCGGAGAAGGGGACGGGGATCGAACAGTGTGTTGCCTTCTTGGTACCCAAGAACCCCTCTCCGTGATATTACTGCGATTACCAGGGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGAGGAGAATGGTGAAACTGCAGAGGGTCAATTTCCATCTCTACAAGTTCAGGATGCTCCTCCTGAGCATCAAGTTCTCGCTGCTACTCCTTCAACCATTAAGAAGAGACCTTGCCCACCTCCTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTGCTGAACTCGATTGACAAAGTTGAGAAGGTGGTGTTGGAAGAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTAGAACTTTGATGTCAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

237

Amino Acids

26.79

Weight (kDa)

11.02

Isoelectric Point (pI)

68.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccII	CGCG	2 cut(s)	47, 102
AciI	CCGC	3 cut(s)	47, 83, 130
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	2 cut(s)	620, 665
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	277, 363, 560
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	477
AjnI	CCWGG	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AluBI	AGCT	2 cut(s)	374, 589
AluI	AGCT	2 cut(s)	374, 589
Alw21I	GWGCWC	2 cut(s)	376, 525
Alw26I	GTCTC	2 cut(s)	154, 484
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	643
Ama87I	CYCGRG	1 cut(s)	655
AoxI	GGCC	4 cut(s)	32, 51, 255, 354
ApaLI	GTGCAC	1 cut(s)	521
ApeKI	GCWGC	3 cut(s)	250, 464, 589
ApoI	RAATTY	1 cut(s)	528
AsiGI	ACCGGT	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	633
Asp718I	GGTACC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	354, 651
AsuHPI	GGTGA	3 cut(s)	200, 395, 407
AvaI	CYCGRG	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	525
BaeI	ACNNNNGTAYC	2 cut(s)	137, 170
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	3 cut(s)	198, 229, 376
Bbv12I	GWGCWC	2 cut(s)	376, 525
BbvI	GCAGC	3 cut(s)	237, 451, 576
BccI	CCATC	2 cut(s)	185, 427
BceAI	ACGGC	2 cut(s)	19, 179
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	154, 484
BfaI	CTAG	4 cut(s)	15, 167, 267, 536
BfmI	CTRYAG	2 cut(s)	180, 402
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	251, 465, 590
BlsI	GCNGC	3 cut(s)	252, 466, 591
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	651
BmeT110I	CYCGRG	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	354, 651
BmiI	GGNNCC	2 cut(s)	314, 653
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	2 cut(s)	427, 460
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 363, 560
Bse118I	RCCGGY	3 cut(s)	4, 121, 148
BseBI	CCWGG	1 cut(s)	352
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	3 cut(s)	277, 363, 560
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	3 cut(s)	379, 401, 432
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	3 cut(s)	237, 451, 576
Bsh1236I	CGCG	2 cut(s)	47, 102
BshFI	GGCC	4 cut(s)	34, 53, 257, 356
BshNI	GGYRCC	1 cut(s)	312
BshTI	ACCGGT	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	376, 525
BsiHKCI	CYCGRG	1 cut(s)	655
BsiSI	CCGG	5 cut(s)	5, 122, 149, 258, 271
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	277, 363, 560
BsmAI	GTCTC	2 cut(s)	154, 484
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	4 cut(s)	34, 53, 257, 356
Bso31I	GGTCTC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	4 cut(s)	198, 229, 376, 525
Bsp143I	GATC	3 cut(s)	68, 94, 287
BspACI	CCGC	3 cut(s)	47, 83, 130
BspANI	GGCC	4 cut(s)	34, 53, 257, 356
BspCNI	CTCAG	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	47, 102
BspLI	GGNNCC	2 cut(s)	314, 653
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	484
BsrFI	RCCGGY	3 cut(s)	4, 121, 148
BssAI	RCCGGY	3 cut(s)	4, 121, 148
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	68, 94, 287
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	3 cut(s)	364, 482, 641
BstC8I	GCNNGC	5 cut(s)	77, 81, 123, 255, 376
BstDEI	CTNAG	2 cut(s)	447, 663
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	2 cut(s)	47, 102
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	3 cut(s)	71, 97, 290
BstMAI	GTCTC	2 cut(s)	154, 484
BstMBI	GATC	3 cut(s)	68, 94, 287
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 127, 668
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstSFI	CTRYAG	2 cut(s)	180, 402
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	2 cut(s)	47, 102
BstV1I	GCAGC	3 cut(s)	237, 451, 576
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	34, 53, 257, 356
BsuTUI	ATCGAT	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	5 cut(s)	77, 81, 123, 255, 376
CaiI	CAGNNNCTG	1 cut(s)	643
CfoI	GCGC	1 cut(s)	102
Cfr10I	RCCGGY	3 cut(s)	4, 121, 148
Cfr13I	GGNCC	2 cut(s)	354, 651
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	313
CspAI	ACCGGT	1 cut(s)	148
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	447, 663
DpnI	GATC	3 cut(s)	70, 96, 289
DpnII	GATC	3 cut(s)	68, 94, 287
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	3 cut(s)	364, 482, 641
EarI	CTCTTC	3 cut(s)	364, 482, 641
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	374
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	3 cut(s)	198, 229, 376
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	374
Eco57I	CTGAAG	2 cut(s)	620, 665
Eco88I	CYCGRG	1 cut(s)	655
EcoICRI	GAGCTC	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	3 cut(s)	198, 229, 376
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	1 cut(s)	175
FaqI	GGGAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	251, 465, 590
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	3 cut(s)	198, 229, 376
Fsp4HI	GCNGC	3 cut(s)	251, 465, 590
FspBI	CTAG	4 cut(s)	15, 167, 267, 536
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	3 cut(s)	251, 465, 590
HaeIII	GGCC	4 cut(s)	34, 53, 257, 356
HapII	CCGG	5 cut(s)	5, 122, 149, 258, 271
HhaI	GCGC	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	11, 18, 107, 116
HpaII	CCGG	5 cut(s)	5, 122, 149, 258, 271
HphI	GGTGA	3 cut(s)	200, 395, 407
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	159, 639
Hpy188III	TCNNGA	4 cut(s)	15, 239, 434, 446
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	6 cut(s)	270, 315, 483, 516, 610, 661
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	404, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 127, 668
HpyF3I	CTNAG	2 cut(s)	447, 663
HspAI	GCGC	1 cut(s)	100
KpnI	GGTACC	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	68, 94, 287
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	204, 445
Lsp1109I	GCAGC	3 cut(s)	237, 451, 576
LweI	GCATC	2 cut(s)	427, 460
MaeI	CTAG	4 cut(s)	15, 167, 267, 536
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	3 cut(s)	70, 96, 289
MboI	GATC	3 cut(s)	68, 94, 287
MboII	GAAGA	5 cut(s)	381, 499, 595, 641, 658
MhlI	GDGCHC	4 cut(s)	198, 229, 376, 525
MluCI	AATT	2 cut(s)	413, 528
MlyI	GAGTC	2 cut(s)	20, 116
MmeI	TCCRAC	2 cut(s)	93, 606
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	2 cut(s)	483, 516
MspI	CCGG	5 cut(s)	5, 122, 149, 258, 271
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	2 cut(s)	47, 102
MwoI	GCNNNNNNNGC	3 cut(s)	31, 127, 668
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	3 cut(s)	68, 94, 287
NgoMIV	GCCGGC	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	314, 653
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	18, 116
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	252, 466, 591
PleI	GAGTC	2 cut(s)	19, 115
PpsI	GAGTC	2 cut(s)	19, 115
PpuMI	RGGWCCY	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	314, 653
PspPI	GGNCC	2 cut(s)	354, 651
PspPPI	RGGWCCY	1 cut(s)	651
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	643
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SacI	GAGCTC	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	483, 516
SatI	GCNGC	3 cut(s)	251, 465, 590
Sau3AI	GATC	3 cut(s)	68, 94, 287
Sau96I	GGNCC	2 cut(s)	354, 651
SchI	GAGTC	2 cut(s)	20, 116
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	4 cut(s)	198, 229, 376, 525
SetI	ASST	8 cut(s)	190, 376, 496, 505, 543, 591, 621, 690
SfaNI	GCATC	2 cut(s)	427, 460
SfcI	CTRYAG	2 cut(s)	180, 402
SgrAI	CRCCGGYG	2 cut(s)	121, 148
SinI	GGWCC	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	413, 528
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	47, 83, 130
SspMI	CTAG	4 cut(s)	15, 167, 267, 536
SstI	GAGCTC	1 cut(s)	376
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	5 cut(s)	93, 198, 238, 290, 599
TasI	AATT	2 cut(s)	413, 528
TfiI	GAWTC	2 cut(s)	18, 116
Tru1I	TTAA	2 cut(s)	483, 516
Tru9I	TTAA	2 cut(s)	483, 516
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	3 cut(s)	250, 464, 589
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	301
VneI	GTGCAC	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	651
XapI	RAATTY	1 cut(s)	528
XbaI	TCTAGA	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	4 cut(s)	15, 167, 267, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.