Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Forward (+)

27197654 .. 27207678

Gene Structure 10025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG271500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGATGTCACTTAAAACATTTCTTCTCTCAATATTCATCATCATCATCATCAATATCATCTCTTCAATTTCATGTGACAGAAGTACTAATTTGCAAGAGAACACACTTGAGGATTTTGTTGATGAAGCATCAGGTACTGGATATGATTCCCAAGCGTATCCTTCATACTGGAGCATGATTGATGACAGCAACGACAACTTGGAGGACTTGATCGAGCAAAGTACTGATGATGTCCTCACTTTGAAGAGCTCTGATCAAGAGGCAGTTACCACAGTCAGTGTTCATGATTTTGGAGCTAAGGGTGATGGAGAAACTGATGACACAGAGGCGTTTGTGAAGGCATGGAAGGTAGCTTGTTCGTCTAAGAATGCAGCTGTTTTGGTGGTGCCTCAGAAGATCTATTGGCTTAAACCAATTAGATTTTCAGGTCCTTGCTTATCTCAATTGATGGTGCAGATTGTTGGTACCTTAGAAGCGTCGGATGATCGATCTGACTTCCGCCAAGATGGTAAACACTGGCTTATTTTTGATAGTGTTCGGAAGTTACTGCTTGATGGTGGTGGAACCATCAATGGCAATGGCAAGGAATGGTGGCAGAACTCATGCAAAATCAATAAATCTAAGCCATGCAAGGATGCACCAACGGCACTTGCGTTCTATAAATGTAAGGATTTGATAGTGCAGAATCTAAAGATACAAGATGCTCAGCAAATTCATGTGTCTTTCCAGAAGTGCGTGAACGTTCTAGCTTCCAATCTCTCAATTACTGCACCAGAGAAAAGCCCCAACACCGATGGAATTCATGTTACAAATACTCAAGACATACTCATCACAACCTCTATTATAGCCACTGGTGATGATTGTATTTCAATTGTAAGTGGATCCGAAAAGGTGCAAGCAATGAACGTAACCTGCGGACCAGGTCATGGAATCAGTATCGGAAGCTTGGGATCTGGAAAATCAGAAGCTTATGTTTCTGAAGTTGCTCTATATGGAGCTAAACTAATTGGAACCACAAATGGAGTCAGGATCAAGACTTGGCAGGGAGGATCTGGTAGTGCAAACAACATCACATTTGAGAACATTGAAATGCTTGATGTTACCAACCCCATCCTAATAGATCAATACTACTGTGACAGCAAGAAGCCATGTAAAGAACAGAAATCGTCAGTTCAAGTGCAAAATGTATTGTACAAGAACATCAAAGGAACAAGTGCCTCAGACGTTGCTATTAAGTTTGATTGCAGCAAGAACTTTCCTTGTCAGGGTATTGTGTTGCAAGACATTAAACTTGAGCATGGAGGAGGGAAAACAGCTAAAGCATTATGCAACAATATTAATTTCACAAGCATAGGAGTTGTTTCCCCTCTCTGTTATCAAGCGAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

463

Amino Acids

50.31

Weight (kDa)

5.21

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	119 - 447	4.9e-104	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	920
Acc65I	GGTACC	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	385, 464
AccB7I	CCANNNNNTGG	1 cut(s)	926
AciI	CCGC	2 cut(s)	499, 915
AclI	AACGTT	1 cut(s)	741
AclWI	GGATC	5 cut(s)	876, 889, 958, 1037, 1057
AcsI	RAATTY	2 cut(s)	711, 798
AcuI	CTGAAG	1 cut(s)	999
AfaI	GTAC	5 cut(s)	85, 136, 223, 466, 1193
AfiI	CCNNNNNNNGG	2 cut(s)	926, 1265
AgsI	TTSAA	5 cut(s)	66, 244, 870, 1088, 1175
AjnI	CCWGG	1 cut(s)	919
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	9 cut(s)	249, 296, 353, 374, 749, 945, 968, 998, 1316
AluI	AGCT	9 cut(s)	249, 296, 353, 374, 749, 945, 968, 998, 1316
Alw21I	GWGCWC	1 cut(s)	251
AlwI	GGATC	5 cut(s)	876, 889, 958, 1037, 1057
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	371, 1245
ApoI	RAATTY	2 cut(s)	711, 798
AseI	ATTAAT	1 cut(s)	1338
Asp718I	GGTACC	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	428, 917
AsuHPI	GGTGA	2 cut(s)	314, 866
AvaII	GGWCC	2 cut(s)	428, 917
BamHI	GGATCC	1 cut(s)	881
BanI	GGYRCC	2 cut(s)	385, 464
BanII	GRGCYC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	383, 1257
BccI	CCATC	7 cut(s)	299, 442, 500, 548, 575, 788, 1118
BceAI	ACGGC	1 cut(s)	660
BciT130I	CCWGG	1 cut(s)	921
BciVI	GTATCC	1 cut(s)	168
BclI	TGATCA	1 cut(s)	253
BfaI	CTAG	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	920
BfuI	GTATCC	1 cut(s)	168
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	2 cut(s)	372, 1246
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	2 cut(s)	373, 1247
BmcAI	AGTACT	2 cut(s)	85, 223
Bme1390I	CCNGG	1 cut(s)	921
Bme18I	GGWCC	2 cut(s)	428, 917
BmgT120I	GGNCC	2 cut(s)	428, 917
BmiI	GGNNCC	5 cut(s)	387, 466, 565, 883, 1012
BmrFI	CCNGG	1 cut(s)	921
BmsI	GCATC	3 cut(s)	137, 625, 691
BpmI	CTGGAG	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	3 cut(s)	128, 801, 1313
Bsa29I	ATCGAT	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	926, 1265
Bse1I	ACTGG	4 cut(s)	142, 173, 521, 856
Bse3DI	GCAATG	2 cut(s)	583, 906
BseBI	CCWGG	1 cut(s)	921
BseCI	ATCGAT	1 cut(s)	487
BseGI	GGATG	3 cut(s)	487, 640, 1110
BseLI	CCNNNNNNNGG	2 cut(s)	926, 1265
BseMI	GCAATG	2 cut(s)	583, 906
BseMII	CTCAG	3 cut(s)	404, 719, 1233
BseNI	ACTGG	4 cut(s)	142, 173, 521, 856
BseRI	GAGGAG	1 cut(s)	1317
BseXI	GCAGC	2 cut(s)	383, 1257
BsgI	GTGCAG	3 cut(s)	473, 701, 753
BshNI	GGYRCC	2 cut(s)	385, 464
BshVI	ATCGAT	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	926, 1265
BsmI	GAATGC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp1407I	TGTACA	1 cut(s)	1191
Bsp1720I	GCTNAGC	1 cut(s)	705
BspACI	CCGC	2 cut(s)	499, 915
BspCNI	CTCAG	3 cut(s)	403, 718, 1232
BspDI	ATCGAT	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	5 cut(s)	387, 466, 565, 883, 1012
BspMI	ACCTGC	1 cut(s)	920
BspPI	GGATC	5 cut(s)	876, 889, 958, 1037, 1057
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	2 cut(s)	385, 464
BsrDI	GCAATG	2 cut(s)	583, 906
BsrGI	TGTACA	1 cut(s)	1191
BsrI	ACTGG	4 cut(s)	142, 173, 521, 856
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	2 cut(s)	274, 1133
Bst6I	CTCTTC	2 cut(s)	67, 239
BstAUI	TGTACA	1 cut(s)	1191
BstC8I	GCNNGC	1 cut(s)	897
BstDEI	CTNAG	7 cut(s)	297, 363, 390, 469, 621, 705, 1219
BstF5I	GGATG	3 cut(s)	487, 640, 1110
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	1 cut(s)	921
BstSCI	CCNGG	1 cut(s)	919
BstV1I	GCAGC	2 cut(s)	383, 1257
BstX2I	RGATCY	4 cut(s)	396, 881, 950, 1049
BstYI	RGATCY	4 cut(s)	396, 881, 950, 1049
Bsu15I	ATCGAT	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	487, 640, 1110
BtsIMutI	CAGTG	3 cut(s)	283, 514, 849
BveI	ACCTGC	1 cut(s)	920
Cac8I	GCNNGC	1 cut(s)	897
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	428, 917
ClaI	ATCGAT	1 cut(s)	487
CseI	GACGC	1 cut(s)	465
CsiI	ACCWGGT	1 cut(s)	919
Csp6I	GTAC	5 cut(s)	84, 135, 222, 465, 1192
CviQI	GTAC	5 cut(s)	84, 135, 222, 465, 1192
DdeI	CTNAG	7 cut(s)	297, 363, 390, 469, 621, 705, 1219
Eam1104I	CTCTTC	2 cut(s)	67, 239
EarI	CTCTTC	2 cut(s)	67, 239
EciI	GGCGGA	1 cut(s)	488
Ecl136II	GAGCTC	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	428, 917
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	999
EcoICRI	GAGCTC	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	798
EcoRII	CCWGG	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	372, 1246
FokI	GGATG	3 cut(s)	494, 647, 1097
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	372, 1246
FspBI	CTAG	1 cut(s)	746
GluI	GCNGC	2 cut(s)	372, 1246
GsuI	CTGGAG	1 cut(s)	190
HgaI	GACGC	1 cut(s)	465
HindIII	AAGCTT	2 cut(s)	943, 966
HinfI	GANTC	4 cut(s)	146, 685, 930, 1023
HphI	GGTGA	2 cut(s)	314, 866
Hpy166II	GTNNAC	2 cut(s)	512, 739
Hpy188III	TCNNGA	7 cut(s)	257, 284, 727, 818, 954, 1027, 1033
Hpy8I	GTNNAC	2 cut(s)	512, 739
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	3 cut(s)	171, 331, 340
HpyCH4III	ACNGT	2 cut(s)	274, 1133
HpyCH4IV	ACGT	3 cut(s)	741, 906, 1224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	7 cut(s)	297, 363, 390, 469, 621, 705, 1219
HpySE526I	ACGT	3 cut(s)	741, 906, 1224
KpnI	GGTACC	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	253
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	3 cut(s)	171, 293, 995
Lsp1109I	GCAGC	2 cut(s)	383, 1257
LweI	GCATC	3 cut(s)	137, 625, 691
MabI	ACCWGGT	1 cut(s)	919
MaeI	CTAG	1 cut(s)	746
MaeII	ACGT	3 cut(s)	741, 906, 1224
MaeIII	GTNAC	8 cut(s)	6, 74, 265, 543, 805, 907, 1099, 1133
MboII	GAAGA	4 cut(s)	14, 54, 256, 406
MfeI	CAATTG	2 cut(s)	443, 870
MflI	RGATCY	4 cut(s)	396, 881, 950, 1049
MhlI	GDGCHC	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	1032
MmeI	TCCRAC	1 cut(s)	459
MseI	TTAA	5 cut(s)	12, 408, 1233, 1287, 1338
MslI	CAYNNNNRTG	1 cut(s)	1088
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	921
MunI	CAATTG	2 cut(s)	443, 870
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	921
MwoI	GCNNNNNNNGC	1 cut(s)	644
NlaIV	GGNNCC	5 cut(s)	387, 466, 565, 883, 1012
NmuCI	GTSAC	3 cut(s)	6, 74, 1133
PagI	TCATGA	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	650
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	146, 685, 930
PflFI	GACNNNGTC	1 cut(s)	921
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	2 cut(s)	373, 1247
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
PpuMI	RGGWCCY	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	1338
Psp124BI	GAGCTC	1 cut(s)	251
Psp1406I	AACGTT	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	919
PspGI	CCWGG	1 cut(s)	919
PspN4I	GGNNCC	5 cut(s)	387, 466, 565, 883, 1012
PspPI	GGNCC	2 cut(s)	428, 917
PspPPI	RGGWCCY	1 cut(s)	428
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	4 cut(s)	396, 881, 950, 1049
PsyI	GACNNNGTC	1 cut(s)	921
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	5 cut(s)	85, 136, 223, 466, 1193
RsaNI	GTAC	5 cut(s)	84, 135, 222, 465, 1192
RseI	CAYNNNNRTG	1 cut(s)	1088
SacI	GAGCTC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	5 cut(s)	12, 408, 1233, 1287, 1338
SatI	GCNGC	2 cut(s)	372, 1246
Sau96I	GGNCC	2 cut(s)	428, 917
ScaI	AGTACT	2 cut(s)	85, 223
SchI	GAGTC	1 cut(s)	1032
ScrFI	CCNGG	1 cut(s)	921
SduI	GDGCHC	1 cut(s)	251
SexAI	ACCWGGT	1 cut(s)	919
SfaNI	GCATC	3 cut(s)	137, 625, 691
SinI	GGWCC	2 cut(s)	428, 917
SmiMI	CAYNNNNRTG	1 cut(s)	1088
SmlI	CTYRAG	3 cut(s)	107, 816, 1292
SmoI	CTYRAG	3 cut(s)	107, 816, 1292
SsiI	CCGC	2 cut(s)	499, 915
SspI	AATATT	2 cut(s)	33, 1336
SspMI	CTAG	1 cut(s)	746
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	919
TaaI	ACNGT	2 cut(s)	274, 1133
TaiI	ACGT	3 cut(s)	744, 909, 1227
TaqI	TCGA	2 cut(s)	213, 487
TatI	WGTACW	3 cut(s)	83, 221, 1191
TfiI	GAWTC	3 cut(s)	146, 685, 930
Tru1I	TTAA	5 cut(s)	12, 408, 1233, 1287, 1338
Tru9I	TTAA	5 cut(s)	12, 408, 1233, 1287, 1338
TscAI	CASTG	3 cut(s)	283, 521, 856
TseFI	GTSAC	3 cut(s)	6, 74, 1133
TseI	GCWGC	2 cut(s)	371, 1245
Tsp45I	GTSAC	3 cut(s)	6, 74, 1133
TspDTI	ATGAA	8 cut(s)	25, 60, 138, 153, 272, 704, 791, 917
TspRI	CASTG	3 cut(s)	283, 521, 856
Tth111I	GACNNNGTC	1 cut(s)	921
Van91I	CCANNNNNTGG	1 cut(s)	926
VpaK11BI	GGWCC	2 cut(s)	428, 917
VspI	ATTAAT	1 cut(s)	1338
XapI	RAATTY	2 cut(s)	711, 798
XspI	CTAG	1 cut(s)	746
ZrmI	AGTACT	2 cut(s)	85, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.