pycom05g17960

Polygalacturonase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
21050476 .. 21052855
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17960.3

Sequence Viewer

Length: 1380 bp
ATGGCTTCACGAACACATTTGTTATGGTCATTTGTTGTTGTTTTTGTTGTTTCCTTTAGTACTACTTCATGTTACGGTAGTTTCCAGGAGGTCAACTCACTTCATAGTTACATTGACCATGTTGATAAAGAGTCTGGCTACAATCCTAGGGCTTATCCTTCTTACATGGACACCACTGAAGGTTTCAAGTCCATGGAATTGATCAGACCAAGAACTCAGCTCTTCAGTTCAAGGAAGATCAACAAAATCGCCGGTGGCATAGCGACATCATCAGCTCCGGCCAAAACGATTAGCGTTGACGATTTTGGAGCTAAAGGGAATGGTGCTGATGATGACACACAGGCATTTTTGAAGGCATGGAAGGTAGCTTGTTCTTCCAGTGGAGCAATAGTTCTTGTGGTGCCACAGAAAAGCTATCTTGTTAGGCCAATTGAATTCTCAGGCCCCTGCAAATCTCGACTTACAATGCAGATTTATGGAACCATAGAAGCATCAGAAGACCGATCAATCTACAAAGACCTAGACCGCTGGCTCATGTTTGACAACGTCCAAAACTTACTAGTTGTTGGTCCCGGAACCATCAATGGCAATGGAAACATATGGTGGAAAAACTCATGCAAAAGAAAGCCTCAGCCCCCTTGCGGTAAACAAGCCCCCACGGCTGTGACCTTCAACGGGTGCAATAACTTGGTGGTGAAGAATCTGAAGATCCAAGACGCTCAACAAATGCATGTTATGTTCCAAAACTGCTTCAATGTTCAAGCTTCCCGTCTCACAGTAACTGCACCTGAGGATAGCCCCAATACTGATGGAATTCATGTTGCAAATACCCAAAACATCACTATCTCGAGCTCGGTTATAGGAACAGGTGATGACTGTATTTCTATTGTGAGTGGGTCTCAAAGAGTTCAAGCCAAAAACATAACTTGTGGGCCAGGCCATGGAATCAGTATTGGTAGCTTGGGAAAAGATGGCTCAAAAGACTATGTTTCAGGAGTACTTGTGAATGGAGCTAAGCTTTCAGGAACCACCAATGGACTCAGGATCAAGACATGGCAGGGTGGCTTAGGCAGTGCAACCAACATTGTTTTCCAGAATGTGCAAATGAATAATGTCACCAACCCCATCATGATCGACCAGAACTACTGTGACCACAAAACCAAAGACTGCAATCAACAGAAATCGGCGGTTCAAGTGAAAAATGTGTTGTACCAAAACATCAGAGGAACAAGTGCTTCCGGCGACGCGATAACGGTTAACTGCAGCCAAAGTTTTCCTTGTCAAGGGATTGTGCTGCAAAATATTCAACTGCAGAATGGAAGAGCTGAATGCAACAATGTTCAGCCTGCTTACAAAGGAGTTGTCTCTCCAAGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

49.74

Weight (kDa)

8.93

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 941
AccII CGCG 1 cut(s) 1247
AciI CCGC 3 cut(s) 526, 642, 1187
AclWI GGATC 2 cut(s) 703, 1052
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 2 cut(s) 434, 813
AcuI CTGAAG 3 cut(s) 198, 208, 725
AfaI GTAC 3 cut(s) 61, 999, 1211
AfiI CCNNNNNNNGG 4 cut(s) 641, 675, 941, 1283
AhlI ACTAGT 1 cut(s) 559
AjnI CCWGG 2 cut(s) 84, 934
AjuI GAANNNNNNNTTGG 2 cut(s) 1073, 1105
AleI CACNNNNGTG 1 cut(s) 662
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 3 cut(s) 776, 903, 1369
AlwI GGATC 2 cut(s) 703, 1052
AlwNI CAGNNNCTG 1 cut(s) 782
Ama87I CYCGRG 1 cut(s) 847
AoxI GGCC 5 cut(s) 279, 425, 442, 932, 937
ApeKI GCWGC 2 cut(s) 1263, 1294
ApoI RAATTY 2 cut(s) 434, 813
ArsI GACNNNNNNTTYG 2 cut(s) 1347, 1379
AspA2I CCTAGG 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 443, 569, 932
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 3 cut(s) 706, 881, 1108
AvaI CYCGRG 1 cut(s) 847
AvaII GGWCC 1 cut(s) 569
AvrII CCTAGG 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 789
BanI GGYRCC 1 cut(s) 400
BanII GRGCYC 1 cut(s) 854
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 854
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 1275, 1281
BccI CCATC 4 cut(s) 587, 803, 965, 1133
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 2 cut(s) 86, 936
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 3 cut(s) 776, 903, 1369
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 3 cut(s) 147, 521, 560
BfmI CTRYAG 2 cut(s) 1261, 1310
BglI GCCNNNNNGGC 1 cut(s) 659
BisI GCNGC 2 cut(s) 1264, 1295
BlnI CCTAGG 1 cut(s) 146
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 2 cut(s) 1265, 1296
BmcAI AGTACT 2 cut(s) 61, 999
Bme1390I CCNGG 3 cut(s) 86, 573, 936
Bme18I GGWCC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 3 cut(s) 443, 569, 932
BmiI GGNNCC 6 cut(s) 402, 445, 481, 571, 577, 1027
BmrFI CCNGG 3 cut(s) 86, 573, 936
BmsI GCATC 1 cut(s) 500
BpiI GAAGAC 1 cut(s) 504
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 883, 915
Bpu10I CCTNAGC 2 cut(s) 630, 1066
Bpu1102I GCTNAGC 1 cut(s) 1014
BpuMI CCSGG 1 cut(s) 573
BsaI GGTCTC 1 cut(s) 903
BsaJI CCNNGG 4 cut(s) 146, 192, 657, 940
BsaXI ACNNNNNCTCC 4 cut(s) 375, 405, 987, 1017
Bsc4I CCNNNNNNNGG 4 cut(s) 641, 675, 941, 1283
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 378
Bse21I CCTNAGG 1 cut(s) 789
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 2 cut(s) 86, 936
BseDI CCNNGG 4 cut(s) 146, 192, 657, 940
BseLI CCNNNNNNNGG 4 cut(s) 641, 675, 941, 1283
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 5 cut(s) 230, 453, 644, 780, 1054
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 1275, 1281
BsgI GTGCAG 1 cut(s) 768
Bsh1236I CGCG 1 cut(s) 1247
BshFI GGCC 5 cut(s) 281, 427, 444, 934, 939
BshNI GGYRCC 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 854
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 4 cut(s) 252, 278, 573, 1239
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 4 cut(s) 641, 675, 941, 1283
BsmAI GTCTC 3 cut(s) 776, 903, 1369
BsmBI CGTCTC 1 cut(s) 776
BsmFI GGGAC 1 cut(s) 555
BsmI GAATGC 1 cut(s) 1334
BsnI GGCC 5 cut(s) 281, 427, 444, 934, 939
Bso31I GGTCTC 1 cut(s) 903
BsoBI CYCGRG 1 cut(s) 847
Bsp1286I GDGCHC 1 cut(s) 854
Bsp143I GATC 6 cut(s) 201, 237, 503, 708, 1044, 1131
Bsp1720I GCTNAGC 1 cut(s) 1014
Bsp19I CCATGG 2 cut(s) 192, 940
BspACI CCGC 3 cut(s) 526, 642, 1187
BspANI GGCC 5 cut(s) 281, 427, 444, 934, 939
BspCNI CTCAG 5 cut(s) 229, 452, 643, 781, 1053
BspFNI CGCG 1 cut(s) 1247
BspHI TCATGA 1 cut(s) 1128
BspLI GGNNCC 6 cut(s) 402, 445, 481, 571, 577, 1027
BspMAI CTGCAG 2 cut(s) 1265, 1314
BspPI GGATC 2 cut(s) 703, 1052
BspQI GCTCTTC 2 cut(s) 227, 1315
BspT107I GGYRCC 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 903
BsrDI GCAATG 1 cut(s) 595
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 378
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 4 cut(s) 146, 192, 657, 940
BssMI GATC 6 cut(s) 201, 237, 503, 708, 1044, 1131
BssT1I CCWWGG 3 cut(s) 146, 192, 940
Bst2UI CCWGG 2 cut(s) 86, 936
Bst4CI ACNGT 5 cut(s) 77, 778, 878, 1148, 1255
Bst6I CTCTTC 2 cut(s) 227, 1315
BstC8I GCNNGC 2 cut(s) 530, 1347
BstDEI CTNAG 7 cut(s) 216, 439, 630, 789, 1014, 1040, 1066
BstDSI CCRYGG 3 cut(s) 192, 657, 940
BstENI CCTNNNNNAGG 1 cut(s) 1281
BstFNI CGCG 1 cut(s) 1247
BstKTI GATC 6 cut(s) 204, 240, 506, 711, 1047, 1134
BstMAI GTCTC 3 cut(s) 776, 903, 1369
BstMBI GATC 6 cut(s) 201, 237, 503, 708, 1044, 1131
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstNI CCWGG 2 cut(s) 86, 936
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 3 cut(s) 84, 571, 934
BstSFI CTRYAG 2 cut(s) 1261, 1310
BstUI CGCG 1 cut(s) 1247
BstV1I GCAGC 2 cut(s) 1275, 1281
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 708
BstYI RGATCY 1 cut(s) 708
Bsu36I CCTNAGG 1 cut(s) 789
BsuRI GGCC 5 cut(s) 281, 427, 444, 934, 939
BtgI CCRYGG 3 cut(s) 192, 657, 940
BtsI GCAGTG 1 cut(s) 1078
BtsIMutI CAGTG 3 cut(s) 174, 385, 1078
Cac8I GCNNGC 2 cut(s) 530, 1347
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 1 cut(s) 1128
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 443, 569, 932
CseI GACGC 2 cut(s) 725, 1253
Csp6I GTAC 3 cut(s) 60, 998, 1210
CviQI GTAC 3 cut(s) 60, 998, 1210
DdeI CTNAG 7 cut(s) 216, 439, 630, 789, 1014, 1040, 1066
DpnI GATC 6 cut(s) 203, 239, 505, 710, 1046, 1133
DpnII GATC 6 cut(s) 201, 237, 503, 708, 1044, 1131
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 227, 1315
EarI CTCTTC 2 cut(s) 227, 1315
Ecl136II GAGCTC 1 cut(s) 852
Eco130I CCWWGG 3 cut(s) 146, 192, 940
Eco24I GRGCYC 1 cut(s) 854
Eco31I GGTCTC 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 569
Eco53kI GAGCTC 1 cut(s) 852
Eco57I CTGAAG 3 cut(s) 198, 208, 725
Eco81I CCTNAGG 1 cut(s) 789
Eco88I CYCGRG 1 cut(s) 847
EcoICRI GAGCTC 1 cut(s) 852
EcoNI CCTNNNNNAGG 1 cut(s) 1281
EcoO109I RGGNCCY 1 cut(s) 443
EcoRI GAATTC 2 cut(s) 434, 813
EcoRII CCWGG 2 cut(s) 84, 934
EcoT14I CCWWGG 3 cut(s) 146, 192, 940
EcoT22I ATGCAT 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 3 cut(s) 146, 192, 940
Esp3I CGTCTC 1 cut(s) 776
FalI AAGNNNNNCTT 2 cut(s) 1261, 1293
FaqI GGGAC 1 cut(s) 555
FauNDI CATATG 1 cut(s) 599
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 1264, 1295
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 2 cut(s) 1264, 1295
FspBI CTAG 3 cut(s) 147, 521, 560
GluI GCNGC 2 cut(s) 1264, 1295
HaeIII GGCC 5 cut(s) 281, 427, 444, 934, 939
HapII CCGG 4 cut(s) 252, 278, 573, 1239
HgaI GACGC 2 cut(s) 725, 1253
HincII GTYRAC 3 cut(s) 94, 298, 1258
HindII GTYRAC 3 cut(s) 94, 298, 1258
HindIII AAGCTT 2 cut(s) 762, 1016
HinfI GANTC 4 cut(s) 131, 700, 945, 1038
HpaI GTTAAC 1 cut(s) 1258
HpaII CCGG 4 cut(s) 252, 278, 573, 1239
HphI GGTGA 3 cut(s) 706, 881, 1108
Hpy166II GTNNAC 4 cut(s) 94, 298, 647, 1258
Hpy188I TCNGA 4 cut(s) 206, 496, 705, 1223
Hpy188III TCNNGA 9 cut(s) 9, 456, 847, 993, 1023, 1042, 1048, 1093, 1129
Hpy8I GTNNAC 4 cut(s) 94, 298, 647, 1258
Hpy99I CGWCG 1 cut(s) 1247
HpyAV CCTTC 5 cut(s) 168, 173, 346, 355, 679
HpyCH4III ACNGT 5 cut(s) 77, 778, 878, 1148, 1255
HpyCH4IV ACGT 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpyF3I CTNAG 7 cut(s) 216, 439, 630, 789, 1014, 1040, 1066
HpySE526I ACGT 1 cut(s) 546
Ksp22I TGATCA 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 1258
Kzo9I GATC 6 cut(s) 201, 237, 503, 708, 1044, 1131
LguI GCTCTTC 2 cut(s) 227, 1315
LmnI GCTCC 4 cut(s) 280, 308, 383, 1010
Lsp1109I GCAGC 2 cut(s) 1275, 1281
LweI GCATC 1 cut(s) 500
MaeI CTAG 3 cut(s) 147, 521, 560
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 6 cut(s) 71, 107, 664, 778, 1114, 1148
MalI GATC 6 cut(s) 203, 239, 505, 710, 1046, 1133
MboI GATC 6 cut(s) 201, 237, 503, 708, 1044, 1131
MboII GAAGA 7 cut(s) 214, 247, 366, 509, 709, 718, 1332
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 708
MhlI GDGCHC 1 cut(s) 854
MluCI AATT 4 cut(s) 197, 429, 434, 813
MlyI GAGTC 2 cut(s) 140, 1032
MnlI CCTC 4 cut(s) 82, 639, 784, 1217
Mph1103I ATGCAT 1 cut(s) 732
MseI TTAA 1 cut(s) 1257
MslI CAYNNNNRTG 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 528
MspI CCGG 4 cut(s) 252, 278, 573, 1239
MspR9I CCNGG 3 cut(s) 86, 573, 936
MunI CAATTG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 1334
MvaI CCWGG 2 cut(s) 86, 936
MvnI CGCG 1 cut(s) 1247
MwoI GCNNNNNNNGC 1 cut(s) 659
NciI CCSGG 1 cut(s) 573
NcoI CCATGG 2 cut(s) 192, 940
NdeI CATATG 1 cut(s) 599
NdeII GATC 6 cut(s) 201, 237, 503, 708, 1044, 1131
NlaIV GGNNCC 6 cut(s) 402, 445, 481, 571, 577, 1027
NmuCI GTSAC 3 cut(s) 664, 1114, 1148
NsiI ATGCAT 1 cut(s) 732
NspI RCATGY 1 cut(s) 734
OliI CACNNNNGTG 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 847
PagI TCATGA 1 cut(s) 1128
PciSI GCTCTTC 2 cut(s) 227, 1315
PctI GAATGC 1 cut(s) 1334
PfeI GAWTC 2 cut(s) 700, 945
PflFI GACNNNGTC 1 cut(s) 545
PflMI CCANNNNNTGG 1 cut(s) 941
PfoI TCCNGGA 2 cut(s) 84, 571
PkrI GCNGC 2 cut(s) 1265, 1296
PleI GAGTC 2 cut(s) 139, 1032
PpsI GAGTC 2 cut(s) 139, 1032
Psp124BI GAGCTC 1 cut(s) 854
Psp6I CCWGG 2 cut(s) 84, 934
PspGI CCWGG 2 cut(s) 84, 934
PspN4I GGNNCC 6 cut(s) 402, 445, 481, 571, 577, 1027
PspPI GGNCC 3 cut(s) 443, 569, 932
PstI CTGCAG 2 cut(s) 1265, 1314
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 1 cut(s) 708
PsyI GACNNNGTC 1 cut(s) 545
RsaI GTAC 3 cut(s) 61, 999, 1211
RsaNI GTAC 3 cut(s) 60, 998, 1210
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 854
SapI GCTCTTC 2 cut(s) 227, 1315
SaqAI TTAA 1 cut(s) 1257
SatI GCNGC 2 cut(s) 1264, 1295
Sau3AI GATC 6 cut(s) 201, 237, 503, 708, 1044, 1131
Sau96I GGNCC 3 cut(s) 443, 569, 932
ScaI AGTACT 2 cut(s) 61, 999
SchI GAGTC 2 cut(s) 140, 1032
ScrFI CCNGG 3 cut(s) 86, 573, 936
SduI GDGCHC 1 cut(s) 854
SfaNI GCATC 1 cut(s) 500
SfcI CTRYAG 2 cut(s) 1261, 1310
Sfr274I CTCGAG 1 cut(s) 847
SgrAI CRCCGGYG 1 cut(s) 251
SinI GGWCC 1 cut(s) 569
SlaI CTCGAG 1 cut(s) 847
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 847
SmoI CTYRAG 1 cut(s) 847
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 4 cut(s) 197, 429, 434, 813
SsiI CCGC 3 cut(s) 526, 642, 1187
SspI AATATT 1 cut(s) 1303
SspMI CTAG 3 cut(s) 147, 521, 560
SstI GAGCTC 1 cut(s) 854
StyD4I CCNGG 3 cut(s) 84, 571, 934
StyI CCWWGG 3 cut(s) 146, 192, 940
TaaI ACNGT 5 cut(s) 77, 778, 878, 1148, 1255
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 457, 848, 1134
TaqII GACCGA 1 cut(s) 516
TasI AATT 4 cut(s) 197, 429, 434, 813
TatI WGTACW 2 cut(s) 59, 997
TfiI GAWTC 2 cut(s) 700, 945
Tru1I TTAA 1 cut(s) 1257
Tru9I TTAA 1 cut(s) 1257
TscAI CASTG 3 cut(s) 181, 385, 1078
TseFI GTSAC 3 cut(s) 664, 1114, 1148
TseI GCWGC 2 cut(s) 1263, 1294
Tsp45I GTSAC 3 cut(s) 664, 1114, 1148
TspDTI ATGAA 4 cut(s) 57, 92, 806, 1121
TspRI CASTG 3 cut(s) 181, 385, 1078
Tth111I GACNNNGTC 1 cut(s) 545
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 569
XagI CCTNNNNNAGG 1 cut(s) 1281
XapI RAATTY 2 cut(s) 434, 813
XceI RCATGY 1 cut(s) 734
XhoI CTCGAG 1 cut(s) 847
XmaJI CCTAGG 1 cut(s) 146
XspI CTAG 3 cut(s) 147, 521, 560
ZrmI AGTACT 2 cut(s) 61, 999
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.