Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Reverse (-)

18269211 .. 18271941

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCGATAGGAAACCCAGAAGTAGCAACTATGGGGAAGGAGAACACTGAAGCCGAGTCCTCTAATGGAAACGAGTCTCAGTTAAGTTCTGACTTAACGAAGAGTCTTGATCTGGCTGAAGTGAAGGAAGACGAAAAGGATAATAACCAAGAAGAAGAAGATGGACTGAAAGCTGAGGCTTCAACGAAGAAGAAGAAGAAGAAAAGTAAAAGCAAGAAGAAGAAGAGTTCTCTTCAACAGACTGATCCTCCTTCAATTCCTGTTCTTGAGCTCTTCCCTTCTGGAGATTTTCCTCAAGGTGAAATCCAACAGTACAATGATGATAATTTGTGGAGAACAACATCTGAAGAGAAGAGAGAGATGGAGAGGCTGCAAAAGCCGATATATAACTCTCTTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGTATATTGAAGCCTGGAATGTTGATGATTGATCTCTGTGAGACTTTAGAGAACACTGTTCGTAAGTTGATATCAGAGAATGGTCTTCAAGCTGGTATCGCCTTTCCTACAGGATGTTCACTGAATAATGTTGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTGATGAAGCTGGATTTTGGAACACATATTGATGGGCACATTGTTGATTCTGCTTTTACAGTTGCGTTCAATCCTATGTTTGATCCTCTTTTAGCAGCCTCGCGTGACGCAACATATACTGGTATCAAGGAAGCCGGGGTAGATGTCCGGCTCTGTGATGTTGGTGCTGCAGTTCAGGAGGTCATGGAGTCTTATGAGGTTGAAATCAATGGAAAAGTCTACCAAGTCAAAAGTATCAGAAACCTGAATGGGCACAGCATTGGACGCTATCAGATACACGCTGAAAAATCAGTTCCTAATGTTAGAGGAGGCGAGCAGACGAAAATGGAAGAGGGTGAATTATATGCCATTGAAACTTTTGGATCAACAGGGAAAGGATATGTAAGAGAAGACTTAGAATGTAGCCATTACATGAAAAACTATGATGTGGGTCATGTACCTTTGAGGTTACCAAGGGCAAAACAACTCCTTGCCACTATTAACAAGAACTTCTCCACGCTAGCCTTCTGCAGACGTTATTTGGACCGCCTTGGTGAAACAAAATACTTGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATGTCCTCCAGTGTGTGATGTCAAAGGAAGCTATATTTCTCAGTTTGAGCATACAATCCTGTTGCGACCAACTTGCAAAGAGATTATTTCCAAAGGAGACGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

441

Amino Acids

49.39

Weight (kDa)

5.66

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	11 - 210	6.4e-29	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	1 cut(s)	730
AciI	CCGC	2 cut(s)	407, 1153
AclWI	GGATC	3 cut(s)	239, 704, 997
AcuI	CTGAAG	4 cut(s)	69, 138, 366, 599
AfaI	GTAC	2 cut(s)	314, 1065
AfiI	CCNNNNNNNGG	2 cut(s)	406, 596
AgsI	TTSAA	8 cut(s)	183, 236, 255, 451, 530, 697, 830, 980
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	5 cut(s)	173, 271, 533, 637, 1248
AluI	AGCT	5 cut(s)	173, 271, 533, 637, 1248
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	3 cut(s)	81, 476, 1308
AlwI	GGATC	3 cut(s)	239, 704, 997
ApeKI	GCWGC	5 cut(s)	370, 404, 575, 722, 794
AspS9I	GGNCC	1 cut(s)	1150
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	311, 974, 1172
AsuNHI	GCTAGC	1 cut(s)	1126
AvaII	GGWCC	1 cut(s)	1150
BaeGI	GKGCMC	2 cut(s)	666, 882
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	3 cut(s)	135, 518, 1023
Bbv12I	GWGCWC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	5 cut(s)	357, 416, 562, 734, 781
BccI	CCATC	4 cut(s)	155, 355, 653, 1171
BcgI	CGANNNNNNTGC	2 cut(s)	1272, 1306
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	3 cut(s)	81, 476, 1308
BfaI	CTAG	1 cut(s)	1127
BfmI	CTRYAG	3 cut(s)	549, 795, 1135
BisI	GCNGC	5 cut(s)	371, 405, 576, 723, 795
BlsI	GCNGC	5 cut(s)	372, 406, 577, 724, 796
Bme1390I	CCNGG	2 cut(s)	456, 763
Bme18I	GGWCC	1 cut(s)	1150
BmgT120I	GGNCC	1 cut(s)	1150
BmrFI	CCNGG	2 cut(s)	456, 763
BmtI	GCTAGC	1 cut(s)	1130
BpiI	GAAGAC	3 cut(s)	135, 518, 1023
BpmI	CTGGAG	3 cut(s)	303, 618, 1209
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	279, 287
BpuMI	CCSGG	1 cut(s)	763
BsaJI	CCNNGG	3 cut(s)	762, 1079, 1156
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 596
Bse1I	ACTGG	2 cut(s)	751, 1226
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	762, 1079, 1156
BseGI	GGATG	1 cut(s)	560
BseLI	CCNNNNNNNGG	2 cut(s)	406, 596
BseMII	CTCAG	3 cut(s)	92, 165, 1271
BseNI	ACTGG	2 cut(s)	751, 1226
BseRI	GAGGAG	1 cut(s)	948
BseSI	GKGCMC	2 cut(s)	666, 882
BseXI	GCAGC	5 cut(s)	357, 416, 562, 734, 781
Bsh1236I	CGCG	1 cut(s)	730
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	762, 775
BslI	CCNNNNNNNGG	2 cut(s)	406, 596
BsmAI	GTCTC	3 cut(s)	81, 476, 1308
BsmBI	CGTCTC	1 cut(s)	1308
Bsp1286I	GDGCHC	3 cut(s)	273, 666, 882
Bsp143I	GATC	5 cut(s)	109, 244, 472, 709, 989
BspACI	CCGC	2 cut(s)	407, 1153
BspCNI	CTCAG	3 cut(s)	91, 166, 1270
BspFNI	CGCG	1 cut(s)	730
BspMAI	CTGCAG	2 cut(s)	799, 1139
BspOI	GCTAGC	1 cut(s)	1130
BspPI	GGATC	3 cut(s)	239, 704, 997
BspQI	GCTCTTC	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	751, 1226
BssECI	CCNNGG	3 cut(s)	762, 1079, 1156
BssMI	GATC	5 cut(s)	109, 244, 472, 709, 989
BssT1I	CCWWGG	2 cut(s)	1079, 1156
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	4 cut(s)	312, 499, 610, 688
Bst6I	CTCTTC	8 cut(s)	95, 218, 237, 278, 342, 347, 399, 951
BstC8I	GCNNGC	2 cut(s)	941, 1128
BstDEI	CTNAG	4 cut(s)	78, 174, 1021, 1257
BstEII	GGTNACC	1 cut(s)	1074
BstF5I	GGATG	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	730
BstKTI	GATC	5 cut(s)	112, 247, 475, 712, 992
BstMAI	GTCTC	3 cut(s)	81, 476, 1308
BstMBI	GATC	5 cut(s)	109, 244, 472, 709, 989
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 539, 891
BstNI	CCWGG	1 cut(s)	456
BstPI	GGTNACC	1 cut(s)	1074
BstSCI	CCNGG	2 cut(s)	454, 761
BstSFI	CTRYAG	3 cut(s)	549, 795, 1135
BstSLI	GKGCMC	2 cut(s)	666, 882
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	5 cut(s)	357, 416, 562, 734, 781
BstV2I	GAAGAC	3 cut(s)	135, 518, 1023
BtsCI	GGATG	1 cut(s)	560
BtsIMutI	CAGTG	4 cut(s)	45, 495, 560, 1233
Cac8I	GCNNGC	2 cut(s)	941, 1128
Cfr13I	GGNCC	1 cut(s)	1150
CseI	GACGC	2 cut(s)	743, 900
Csp6I	GTAC	2 cut(s)	313, 1064
CviAII	CATG	4 cut(s)	811, 1039, 1061, 1218
CviQI	GTAC	2 cut(s)	313, 1064
DdeI	CTNAG	4 cut(s)	78, 174, 1021, 1257
DpnI	GATC	5 cut(s)	111, 246, 474, 711, 991
DpnII	GATC	5 cut(s)	109, 244, 472, 709, 989
DraI	TTTAAA	1 cut(s)	1185
Eam1104I	CTCTTC	8 cut(s)	95, 218, 237, 278, 342, 347, 399, 951
EarI	CTCTTC	8 cut(s)	95, 218, 237, 278, 342, 347, 399, 951
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	1079, 1156
Eco24I	GRGCYC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	1150
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	4 cut(s)	69, 138, 366, 599
Eco91I	GGTNACC	1 cut(s)	1074
EcoICRI	GAGCTC	1 cut(s)	271
EcoO65I	GGTNACC	1 cut(s)	1074
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	513
EcoT14I	CCWWGG	2 cut(s)	1079, 1156
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	2 cut(s)	1079, 1156
Esp3I	CGTCTC	1 cut(s)	1308
FaeI	CATG	4 cut(s)	814, 1042, 1064, 1221
FatI	CATG	4 cut(s)	810, 1038, 1060, 1217
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	5 cut(s)	371, 405, 576, 723, 795
FokI	GGATG	1 cut(s)	567
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	5 cut(s)	371, 405, 576, 723, 795
FspBI	CTAG	1 cut(s)	1127
GluI	GCNGC	5 cut(s)	371, 405, 576, 723, 795
GsuI	CTGGAG	3 cut(s)	303, 618, 1209
HapII	CCGG	2 cut(s)	762, 775
HgaI	GACGC	2 cut(s)	743, 900
Hin1II	CATG	4 cut(s)	814, 1042, 1064, 1221
HinfI	GANTC	7 cut(s)	56, 74, 103, 674, 815, 1189, 1199
HpaII	CCGG	2 cut(s)	762, 775
HphI	GGTGA	3 cut(s)	311, 974, 1172
Hpy166II	GTNNAC	2 cut(s)	560, 847
Hpy188I	TCNGA	5 cut(s)	91, 346, 517, 866, 900
Hpy188III	TCNNGA	5 cut(s)	107, 266, 282, 597, 803
Hpy8I	GTNNAC	2 cut(s)	560, 847
HpyAV	CCTTC	6 cut(s)	31, 118, 261, 288, 623, 1141
HpyCH4III	ACNGT	4 cut(s)	312, 499, 610, 688
HpyCH4IV	ACGT	1 cut(s)	1141
HpyCH4V	TGCA	4 cut(s)	373, 797, 1137, 1293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 539, 891
HpyF3I	CTNAG	4 cut(s)	78, 174, 1021, 1257
HpySE526I	ACGT	1 cut(s)	1141
Hsp92II	CATG	4 cut(s)	814, 1042, 1064, 1221
Kzo9I	GATC	5 cut(s)	109, 244, 472, 709, 989
LguI	GCTCTTC	1 cut(s)	278
Lsp1109I	GCAGC	5 cut(s)	357, 416, 562, 734, 781
MaeI	CTAG	1 cut(s)	1127
MaeII	ACGT	1 cut(s)	1141
MaeIII	GTNAC	2 cut(s)	731, 1074
MalI	GATC	5 cut(s)	111, 246, 474, 711, 991
MboI	GATC	5 cut(s)	109, 244, 472, 709, 989
MhlI	GDGCHC	3 cut(s)	273, 666, 882
MluCI	AATT	4 cut(s)	255, 325, 965, 1209
MlyI	GAGTC	4 cut(s)	65, 83, 112, 824
MmeI	TCCRAC	1 cut(s)	331
MseI	TTAA	4 cut(s)	83, 95, 1107, 1184
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	2 cut(s)	762, 775
MspR9I	CCNGG	2 cut(s)	456, 763
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	3 cut(s)	376, 539, 891
NciI	CCSGG	1 cut(s)	763
NdeII	GATC	5 cut(s)	109, 244, 472, 709, 989
NheI	GCTAGC	1 cut(s)	1126
NlaIII	CATG	4 cut(s)	814, 1042, 1064, 1221
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	731
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	674, 1189, 1199
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	5 cut(s)	372, 406, 577, 724, 796
PleI	GAGTC	4 cut(s)	64, 82, 111, 823
PpsI	GAGTC	4 cut(s)	64, 82, 111, 823
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	1074
PspGI	CCWGG	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	1150
PstI	CTGCAG	2 cut(s)	799, 1139
RsaI	GTAC	2 cut(s)	314, 1065
RsaNI	GTAC	2 cut(s)	313, 1064
RseI	CAYNNNNRTG	1 cut(s)	657
SacI	GAGCTC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	83, 95, 1107, 1184
SatI	GCNGC	5 cut(s)	371, 405, 576, 723, 795
Sau3AI	GATC	5 cut(s)	109, 244, 472, 709, 989
Sau96I	GGNCC	1 cut(s)	1150
SchI	GAGTC	4 cut(s)	65, 83, 112, 824
ScrFI	CCNGG	2 cut(s)	456, 763
SduI	GDGCHC	3 cut(s)	273, 666, 882
SfcI	CTRYAG	3 cut(s)	549, 795, 1135
SinI	GGWCC	1 cut(s)	1150
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	2 cut(s)	266, 294
SmoI	CTYRAG	2 cut(s)	266, 294
Sse9I	AATT	4 cut(s)	255, 325, 965, 1209
SsiI	CCGC	2 cut(s)	407, 1153
SspMI	CTAG	1 cut(s)	1127
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	454, 761
StyI	CCWWGG	2 cut(s)	1079, 1156
TaaI	ACNGT	4 cut(s)	312, 499, 610, 688
TaiI	ACGT	1 cut(s)	1144
TasI	AATT	4 cut(s)	255, 325, 965, 1209
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	3 cut(s)	674, 1189, 1199
Tru1I	TTAA	4 cut(s)	83, 95, 1107, 1184
Tru9I	TTAA	4 cut(s)	83, 95, 1107, 1184
TscAI	CASTG	4 cut(s)	52, 502, 567, 1233
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	5 cut(s)	370, 404, 575, 722, 794
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	3 cut(s)	404, 647, 1055
TspRI	CASTG	4 cut(s)	52, 502, 567, 1233
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	1150
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	1 cut(s)	1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.