Rh1BG073300

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
11286717 .. 11293376
6660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG073300.1

Sequence Viewer

Length: 1329 bp
ATGGCAATGGTAATGGAGAAGCCGCTCAACAATCTCCAACTGTTGAGAAAGATGAGGATGAAGACAAAGGAGTCTGGTTCCACCGTACAATCTTCCCTGCCATTAGAAGAGAAGATAAAGTGTACAAATCTTGGATTGAAAAAGAAAGCACAGGCAGAGCATACTGATCCACAATCTTTAAGTGGGCAAACTGATCCACAATCTACAAGTAGGCAAACTGCTCCACAATCTACAAGTAGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGATGGCGAAATTCAACAATACAGAGATGACAACTTGTGGAGGACTACTTCTGAACAGAAGAGGGAGTTGGAGCGCCTTGAAAAGCCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCTGTAAGTTAATATCCGAGAATGGTCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGGCCCCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTAGATTTTGGAACTCATGTTGATGGTCATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTGAAAGGAGGGGAGAAGACAAAAATGGAAGAGGGTGAATTTTTTGCGATTGAAACTTTCGCATCAACTGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCGTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCATTGTCCAGCCTCTTCCTCCTCTCTGTGATGTTAAAGGGAGCTATGTATCTCAGTCTGAGCATACAATTTTACTCCGGCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTAA

Protein Analysis

442

Amino Acids

49.53

Weight (kDa)

6.62

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 133 - 336 2.6e-27 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 1301
AccBSI CCGCTC 1 cut(s) 25
AccIII TCCGGA 1 cut(s) 867
AciI CCGC 2 cut(s) 23, 1156
AclWI GGATC 4 cut(s) 161, 188, 242, 707
AcoI YGGCCR 2 cut(s) 1060, 1286
AcsI RAATTY 4 cut(s) 306, 968, 1048, 1192
AcuI CTGAAG 1 cut(s) 602
AcvI CACGTG 1 cut(s) 734
AfaI GTAC 3 cut(s) 87, 124, 429
AfiI CCNNNNNNNGG 3 cut(s) 286, 599, 1162
AflII CTTAAG 1 cut(s) 1187
AgsI TTSAA 9 cut(s) 139, 311, 377, 568, 700, 725, 833, 877, 983
AjnI CCWGG 3 cut(s) 423, 457, 1158
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 2 cut(s) 407, 1251
AluI AGCT 2 cut(s) 407, 1251
Alw26I GTCTC 2 cut(s) 479, 1160
AlwI GGATC 4 cut(s) 161, 188, 242, 707
Aor13HI TCCGGA 1 cut(s) 867
AoxI GGCC 3 cut(s) 588, 1060, 1286
ApaI GGGCCC 1 cut(s) 592
ApeKI GCWGC 5 cut(s) 407, 578, 797, 1032, 1078
ApoI RAATTY 4 cut(s) 306, 968, 1048, 1192
AspA2I CCTAGG 1 cut(s) 1082
AspLEI GCGC 2 cut(s) 372, 1186
AspS9I GGNCC 3 cut(s) 588, 589, 893
AsuHPI GGTGA 1 cut(s) 977
AsuNHI GCTAGC 1 cut(s) 1099
AvaII GGWCC 1 cut(s) 893
AvrII CCTAGG 1 cut(s) 1082
BaeGI GKGCMC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 592
BbrPI CACGTG 1 cut(s) 734
BbsI GAAGAC 2 cut(s) 68, 953
BbvI GCAGC 5 cut(s) 394, 565, 784, 1044, 1065
BccI CCATC 3 cut(s) 262, 293, 656
BciT130I CCWGG 3 cut(s) 425, 459, 1160
BciVI GTATCC 1 cut(s) 875
BcoDI GTCTC 2 cut(s) 479, 1160
BfaI CTAG 3 cut(s) 1025, 1083, 1100
BfmI CTRYAG 2 cut(s) 408, 1138
BfoI RGCGCY 2 cut(s) 373, 1187
BfrI CTTAAG 1 cut(s) 1187
BfuAI ACCTGC 1 cut(s) 1301
BfuI GTATCC 1 cut(s) 875
BglII AGATCT 1 cut(s) 1021
BisI GCNGC 6 cut(s) 23, 408, 579, 798, 1033, 1079
BlnI CCTAGG 1 cut(s) 1082
BlsI GCNGC 6 cut(s) 24, 409, 580, 799, 1034, 1080
Bme1390I CCNGG 3 cut(s) 425, 459, 1160
Bme18I GGWCC 1 cut(s) 893
BmgT120I GGNCC 3 cut(s) 588, 589, 893
BmiI GGNNCC 3 cut(s) 79, 590, 591
BmrFI CCNGG 3 cut(s) 425, 459, 1160
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 4 cut(s) 548, 1001, 1045, 1192
BmtI GCTAGC 1 cut(s) 1103
BmuI ACTGGG 1 cut(s) 1008
BpiI GAAGAC 2 cut(s) 68, 953
BsaAI YACGTR 1 cut(s) 734
BsaI GGTCTC 1 cut(s) 1160
BsaJI CCNNGG 2 cut(s) 1082, 1159
BsaWI WCCGGW 1 cut(s) 867
BsaXI ACNNNNNCTCC 2 cut(s) 1157, 1187
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 599, 1162
Bse118I RCCGGY 1 cut(s) 1058
Bse1I ACTGG 1 cut(s) 1003
Bse3DI GCAATG 2 cut(s) 12, 540
BseAI TCCGGA 1 cut(s) 867
BseBI CCWGG 3 cut(s) 425, 459, 1160
BseDI CCNNGG 2 cut(s) 1082, 1159
BseGI GGATG 4 cut(s) 63, 254, 563, 1065
BseLI CCNNNNNNNGG 3 cut(s) 286, 599, 1162
BseMI GCAATG 2 cut(s) 12, 540
BseMII CTCAG 3 cut(s) 1064, 1257, 1274
BseNI ACTGG 1 cut(s) 1003
BseRI GAGGAG 1 cut(s) 1218
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 5 cut(s) 394, 565, 784, 1044, 1065
BsgI GTGCAG 1 cut(s) 1051
BshFI GGCC 3 cut(s) 590, 1062, 1288
BsiSI CCGG 3 cut(s) 868, 1059, 1285
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 3 cut(s) 286, 599, 1162
BsmAI GTCTC 2 cut(s) 479, 1160
BsmFI GGGAC 1 cut(s) 617
BsmI GAATGC 2 cut(s) 545, 695
BsnI GGCC 3 cut(s) 590, 1062, 1288
Bso31I GGTCTC 1 cut(s) 1160
Bsp120I GGGCCC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 592
Bsp13I TCCGGA 1 cut(s) 867
Bsp1407I TGTACA 1 cut(s) 122
Bsp143I GATC 6 cut(s) 166, 193, 247, 271, 712, 1021
BspACI CCGC 2 cut(s) 23, 1156
BspANI GGCC 3 cut(s) 590, 1062, 1288
BspCNI CTCAG 3 cut(s) 1065, 1258, 1273
BspEI TCCGGA 1 cut(s) 867
BspLI GGNNCC 3 cut(s) 79, 590, 591
BspMAI CTGCAG 2 cut(s) 412, 1142
BspMI ACCTGC 1 cut(s) 1301
BspOI GCTAGC 1 cut(s) 1103
BspPI GGATC 4 cut(s) 161, 188, 242, 707
BspTI CTTAAG 1 cut(s) 1187
BspTNI GGTCTC 1 cut(s) 1160
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 12, 540
BsrFI RCCGGY 1 cut(s) 1058
BsrGI TGTACA 1 cut(s) 122
BsrI ACTGG 1 cut(s) 1003
BssAI RCCGGY 1 cut(s) 1058
BssECI CCNNGG 2 cut(s) 1082, 1159
BssMI GATC 6 cut(s) 166, 193, 247, 271, 712, 1021
BssT1I CCWWGG 1 cut(s) 1082
Bst2UI CCWGG 3 cut(s) 425, 459, 1160
Bst4CI ACNGT 6 cut(s) 42, 85, 502, 613, 680, 691
Bst6I CTCTTC 4 cut(s) 102, 350, 954, 1227
BstAFI CTTAAG 1 cut(s) 1187
BstAPI GCANNNNNTGC 1 cut(s) 542
BstAUI TGTACA 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 734
BstC8I GCNNGC 5 cut(s) 538, 1060, 1101, 1142, 1207
BstDEI CTNAG 3 cut(s) 1073, 1260, 1266
BstF5I GGATG 4 cut(s) 63, 254, 563, 1065
BstH2I RGCGCY 2 cut(s) 373, 1187
BstHHI GCGC 2 cut(s) 372, 1186
BstKTI GATC 6 cut(s) 169, 196, 250, 274, 715, 1024
BstMAI GTCTC 2 cut(s) 479, 1160
BstMBI GATC 6 cut(s) 166, 193, 247, 271, 712, 1021
BstMWI GCNNNNNNNGC 3 cut(s) 542, 587, 1206
BstNI CCWGG 3 cut(s) 425, 459, 1160
BstSCI CCNGG 3 cut(s) 423, 457, 1158
BstSFI CTRYAG 2 cut(s) 408, 1138
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 5 cut(s) 394, 565, 784, 1044, 1065
BstV2I GAAGAC 2 cut(s) 68, 953
BstX2I RGATCY 1 cut(s) 1021
BstYI RGATCY 1 cut(s) 1021
BsuI GTATCC 1 cut(s) 875
BsuRI GGCC 3 cut(s) 590, 1062, 1288
BtgZI GCGATG 2 cut(s) 404, 1215
BtsCI GGATG 4 cut(s) 63, 254, 563, 1065
BtsIMutI CAGTG 1 cut(s) 1070
BveI ACCTGC 1 cut(s) 1301
Cac8I GCNNGC 5 cut(s) 538, 1060, 1101, 1142, 1207
CfoI GCGC 2 cut(s) 372, 1186
Cfr10I RCCGGY 1 cut(s) 1058
Cfr13I GGNCC 3 cut(s) 588, 589, 893
CseI GACGC 1 cut(s) 767
Csp6I GTAC 3 cut(s) 86, 123, 428
CviAII CATG 5 cut(s) 284, 656, 814, 908, 1042
CviQI GTAC 3 cut(s) 86, 123, 428
DdeI CTNAG 3 cut(s) 1073, 1260, 1266
DpnI GATC 6 cut(s) 168, 195, 249, 273, 714, 1023
DpnII GATC 6 cut(s) 166, 193, 247, 271, 712, 1021
DraI TTTAAA 1 cut(s) 453
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 1060, 1286
Eam1104I CTCTTC 4 cut(s) 102, 350, 954, 1227
EarI CTCTTC 4 cut(s) 102, 350, 954, 1227
Eco130I CCWWGG 1 cut(s) 1082
Eco24I GRGCYC 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 1160
Eco47I GGWCC 1 cut(s) 893
Eco57I CTGAAG 1 cut(s) 602
Eco72I CACGTG 1 cut(s) 734
EcoO109I RGGNCCY 1 cut(s) 589
EcoRII CCWGG 3 cut(s) 423, 457, 1158
EcoT14I CCWWGG 1 cut(s) 1082
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 1082
FaeI CATG 5 cut(s) 287, 659, 817, 911, 1045
FaqI GGGAC 1 cut(s) 617
FatI CATG 5 cut(s) 283, 655, 813, 907, 1041
FauNDI CATATG 1 cut(s) 823
Fnu4HI GCNGC 6 cut(s) 23, 408, 579, 798, 1033, 1079
FokI GGATG 4 cut(s) 70, 241, 570, 1052
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 6 cut(s) 23, 408, 579, 798, 1033, 1079
FspBI CTAG 3 cut(s) 1025, 1083, 1100
GlaI GCGC 2 cut(s) 371, 1185
GluI GCNGC 6 cut(s) 23, 408, 579, 798, 1033, 1079
HaeII RGCGCY 2 cut(s) 373, 1187
HaeIII GGCC 3 cut(s) 590, 1062, 1288
HapII CCGG 3 cut(s) 868, 1059, 1285
HgaI GACGC 1 cut(s) 767
HhaI GCGC 2 cut(s) 372, 1186
Hin1II CATG 5 cut(s) 287, 659, 817, 911, 1045
Hin6I GCGC 2 cut(s) 370, 1184
HinP1I GCGC 2 cut(s) 370, 1184
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 3 cut(s) 71, 761, 818
HpaII CCGG 3 cut(s) 868, 1059, 1285
HphI GGTGA 1 cut(s) 977
Hpy166II GTNNAC 2 cut(s) 123, 676
Hpy188I TCNGA 5 cut(s) 349, 443, 520, 1016, 1267
Hpy188III TCNNGA 6 cut(s) 296, 530, 765, 868, 1025, 1311
Hpy8I GTNNAC 2 cut(s) 123, 676
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 1 cut(s) 838
HpyCH4III ACNGT 6 cut(s) 42, 85, 502, 613, 680, 691
HpyCH4IV ACGT 1 cut(s) 733
HpyCH4V TGCA 7 cut(s) 410, 545, 683, 800, 1032, 1140, 1296
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 587, 1206
HpyF3I CTNAG 3 cut(s) 1073, 1260, 1266
HpySE526I ACGT 1 cut(s) 733
Hsp92II CATG 5 cut(s) 287, 659, 817, 911, 1045
HspAI GCGC 2 cut(s) 370, 1184
Kpn2I TCCGGA 1 cut(s) 867
KroI GCCGGC 1 cut(s) 1058
KroNI GCCGGC 1 cut(s) 1060
Kzo9I GATC 6 cut(s) 166, 193, 247, 271, 712, 1021
LmnI GCTCC 3 cut(s) 226, 367, 1248
Lsp1109I GCAGC 5 cut(s) 394, 565, 784, 1044, 1065
LweI GCATC 4 cut(s) 548, 1001, 1045, 1192
MaeI CTAG 3 cut(s) 1025, 1083, 1100
MaeII ACGT 1 cut(s) 733
MalI GATC 6 cut(s) 168, 195, 249, 273, 714, 1023
MbiI CCGCTC 1 cut(s) 25
MboI GATC 6 cut(s) 166, 193, 247, 271, 712, 1021
MboII GAAGA 9 cut(s) 73, 84, 119, 124, 367, 958, 971, 1031, 1214
MfeI CAATTG 1 cut(s) 1094
MflI RGATCY 1 cut(s) 1021
MhlI GDGCHC 1 cut(s) 592
MlyI GAGTC 2 cut(s) 80, 770
MmeI TCCRAC 2 cut(s) 61, 345
MroI TCCGGA 1 cut(s) 867
MroNI GCCGGC 1 cut(s) 1058
MseI TTAA 7 cut(s) 179, 452, 512, 858, 1110, 1188, 1242
MslI CAYNNNNRTG 1 cut(s) 660
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 3 cut(s) 868, 1059, 1285
MspR9I CCNGG 3 cut(s) 425, 459, 1160
MunI CAATTG 1 cut(s) 1094
Mva1269I GAATGC 2 cut(s) 545, 695
MvaI CCWGG 3 cut(s) 425, 459, 1160
MwoI GCNNNNNNNGC 3 cut(s) 542, 587, 1206
NaeI GCCGGC 1 cut(s) 1060
NdeI CATATG 1 cut(s) 823
NdeII GATC 6 cut(s) 166, 193, 247, 271, 712, 1021
NgoMIV GCCGGC 1 cut(s) 1058
NheI GCTAGC 1 cut(s) 1099
NlaIII CATG 5 cut(s) 287, 659, 817, 911, 1045
NlaIV GGNNCC 3 cut(s) 79, 590, 591
PctI GAATGC 2 cut(s) 545, 695
PdiI GCCGGC 1 cut(s) 1060
PfeI GAWTC 1 cut(s) 818
PkrI GCNGC 6 cut(s) 24, 409, 580, 799, 1034, 1080
PleI GAGTC 2 cut(s) 79, 769
PmaCI CACGTG 1 cut(s) 734
PmlI CACGTG 1 cut(s) 734
PpsI GAGTC 2 cut(s) 79, 769
Ppu21I YACGTR 1 cut(s) 734
Psp6I CCWGG 3 cut(s) 423, 457, 1158
PspCI CACGTG 1 cut(s) 734
PspGI CCWGG 3 cut(s) 423, 457, 1158
PspN4I GGNNCC 3 cut(s) 79, 590, 591
PspOMI GGGCCC 1 cut(s) 588
PspPI GGNCC 3 cut(s) 588, 589, 893
PstI CTGCAG 2 cut(s) 412, 1142
PsuI RGATCY 1 cut(s) 1021
RsaI GTAC 3 cut(s) 87, 124, 429
RsaNI GTAC 3 cut(s) 86, 123, 428
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 7 cut(s) 179, 452, 512, 858, 1110, 1188, 1242
SatI GCNGC 6 cut(s) 23, 408, 579, 798, 1033, 1079
Sau3AI GATC 6 cut(s) 166, 193, 247, 271, 712, 1021
Sau96I GGNCC 3 cut(s) 588, 589, 893
SchI GAGTC 2 cut(s) 80, 770
ScrFI CCNGG 3 cut(s) 425, 459, 1160
SduI GDGCHC 1 cut(s) 592
SetI ASST 9 cut(s) 409, 429, 736, 831, 849, 898, 1253, 1295, 1305
SfaNI GCATC 4 cut(s) 548, 1001, 1045, 1192
SfcI CTRYAG 2 cut(s) 408, 1138
SinI GGWCC 1 cut(s) 893
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
SsiI CCGC 2 cut(s) 23, 1156
SspMI CTAG 3 cut(s) 1025, 1083, 1100
StyD4I CCNGG 3 cut(s) 423, 457, 1158
StyI CCWWGG 1 cut(s) 1082
TaaI ACNGT 6 cut(s) 42, 85, 502, 613, 680, 691
TaiI ACGT 1 cut(s) 736
TaqI TCGA 1 cut(s) 403
TatI WGTACW 1 cut(s) 122
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 7 cut(s) 179, 452, 512, 858, 1110, 1188, 1242
Tru9I TTAA 7 cut(s) 179, 452, 512, 858, 1110, 1188, 1242
TscAI CASTG 1 cut(s) 1077
TseI GCWGC 5 cut(s) 407, 578, 797, 1032, 1078
TspDTI ATGAA 4 cut(s) 74, 407, 650, 1058
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 1 cut(s) 1077
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 1 cut(s) 893
XapI RAATTY 4 cut(s) 306, 968, 1048, 1192
XbaI TCTAGA 1 cut(s) 1024
XcmI CCANNNNNNNNNTGG 2 cut(s) 908, 1177
XmaJI CCTAGG 1 cut(s) 1082
XspI CTAG 3 cut(s) 1025, 1083, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.