Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Reverse (-)

26150501 .. 26156170

Gene Structure 5670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCAAGGGCAGACTGATCCACCATCTATTCCTCTTGTTGACCTGTTCCCATCTGGGGAGTTTCCCGAGGGTGAAATTCAACAGTACAAAGATGATAACCTTTGGAGGACTAGCTCTGAAGAGAAGAGGGAGCTGGAGCGCCTTGAAAAACCAATGTATAATTCTGTTCGTCGAGCGGCAGAAGTTCATCGCCAGGTTCGGAAATACATCAAAGGCATATTAAGGCCTGGAATGTTGATGACTGATTTGTGTGAGACTCTGGAGAACACAGTCAGGAAGTTAATATCCGAGAATGGTCTGGATGCAGGCATTGCTTTCCCGACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGACTGTGCTTCAGTATGATGATGTAATGAAGCTGGATTTTGGAACTCATGTTGACGGAAACATAGTTGACTGCGCTTTTACAGTAGCATTCAATCCTATGTTTGATCCACTCCTTGAAGCCTCGCGTGAAGCAACAAATACTGGTATCAAGGAGTGTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATACAAGAAGTCATGGAATCATATGAGGTTGAAATAAATGGAAAGGTTTATCAAGTTAAAAGTATTCGAAACTTGAATGGACATAGCATTGGACGTTATCAAATCCATGCTGGAAAATCTGTCCCTATTGTGAAAGGCGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTCGCAATTGAAACTTTTGCATCAACTGGGAAAGGGTATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGAAGCTGGCCACATCCCACTGAGGTTGCCCAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCCTTCTGCAGGCGTTACTTAGACCGCCTTGGAGAGACTAAGTATCTTATGGCACTAAAGAATCTGTGTGATGCTGGCATTGTGCAGCCCTATCCTCCTCTCTGTGATGTTAAGGGCAGCTATGTTTCTCAGTTTGAGCATACCATTTTACTCCGGCCAACCTGCAAAGAGGTCATATCCAGAGGTGACGACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

366

Amino Acids

41.15

Weight (kDa)

5.62

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	56 - 259	1.9e-28	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1070
AccBSI	CCGCTC	1 cut(s)	176
AccII	CGCG	1 cut(s)	502
AciI	CCGC	3 cut(s)	176, 708, 925
AclWI	GGATC	2 cut(s)	11, 476
AcoI	YGGCCR	2 cut(s)	829, 1055
AcsI	RAATTY	3 cut(s)	75, 737, 817
AcuI	CTGAAG	2 cut(s)	138, 371
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	3 cut(s)	55, 368, 909
AgsI	TTSAA	9 cut(s)	80, 146, 337, 469, 494, 602, 646, 752, 824
AjnI	CCWGG	3 cut(s)	192, 226, 851
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	5 cut(s)	114, 133, 409, 827, 1020
AluI	AGCT	5 cut(s)	114, 133, 409, 827, 1020
Alw26I	GTCTC	2 cut(s)	248, 929
AlwI	GGATC	2 cut(s)	11, 476
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	4 cut(s)	224, 829, 900, 1055
ApeKI	GCWGC	5 cut(s)	347, 566, 801, 985, 1017
ApoI	RAATTY	3 cut(s)	75, 737, 817
AspLEI	GCGC	2 cut(s)	141, 452
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	83, 746, 1097
AsuII	TTCGAA	1 cut(s)	637
AsuNHI	GCTAGC	1 cut(s)	868
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	831
BbvI	GCAGC	5 cut(s)	334, 553, 813, 997, 1029
BccI	CCATC	2 cut(s)	31, 58
BciT130I	CCWGG	3 cut(s)	194, 228, 853
BcoDI	GTCTC	2 cut(s)	248, 929
BfaI	CTAG	3 cut(s)	111, 794, 869
BfmI	CTRYAG	1 cut(s)	907
BfoI	RGCGCY	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	1070
BglII	AGATCT	1 cut(s)	790
BisI	GCNGC	6 cut(s)	177, 348, 567, 802, 986, 1018
BlsI	GCNGC	6 cut(s)	178, 349, 568, 803, 987, 1019
Bme1390I	CCNGG	3 cut(s)	194, 228, 853
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	194, 228, 853
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	4 cut(s)	292, 317, 770, 961
BmtI	GCTAGC	1 cut(s)	872
BmuI	ACTGGG	1 cut(s)	777
BpmI	CTGGAG	2 cut(s)	155, 281
Bpu14I	TTCGAA	1 cut(s)	637
BsaJI	CCNNGG	4 cut(s)	66, 851, 852, 928
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 368, 909
Bse1I	ACTGG	2 cut(s)	523, 772
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	3 cut(s)	194, 228, 853
BseDI	CCNNGG	4 cut(s)	66, 851, 852, 928
BseGI	GGATG	3 cut(s)	307, 332, 834
BseLI	CCNNNNNNNGG	3 cut(s)	55, 368, 909
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	833, 1043
BseNI	ACTGG	2 cut(s)	523, 772
BseRI	GAGGAG	1 cut(s)	987
BseXI	GCAGC	5 cut(s)	334, 553, 813, 997, 1029
BsgI	GTGCAG	2 cut(s)	820, 1004
Bsh1236I	CGCG	1 cut(s)	502
BshFI	GGCC	4 cut(s)	226, 831, 902, 1057
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	1054
BslFI	GGGAC	2 cut(s)	386, 677
BslI	CCNNNNNNNGG	3 cut(s)	55, 368, 909
BsmAI	GTCTC	2 cut(s)	248, 929
BsmFI	GGGAC	2 cut(s)	386, 677
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	4 cut(s)	226, 831, 902, 1057
BsoBI	CYCGRG	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	16, 481, 790
BspACI	CCGC	3 cut(s)	176, 708, 925
BspANI	GGCC	4 cut(s)	226, 831, 902, 1057
BspCNI	CTCAG	2 cut(s)	834, 1042
BspFNI	CGCG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	1 cut(s)	911
BspMI	ACCTGC	1 cut(s)	1070
BspOI	GCTAGC	1 cut(s)	872
BspPI	GGATC	2 cut(s)	11, 476
BspT104I	TTCGAA	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	523, 772
BssECI	CCNNGG	4 cut(s)	66, 851, 852, 928
BssMI	GATC	3 cut(s)	16, 481, 790
BssT1I	CCWWGG	1 cut(s)	928
Bst2UI	CCWGG	3 cut(s)	194, 228, 853
Bst4CI	ACNGT	4 cut(s)	84, 271, 382, 460
Bst6I	CTCTTC	3 cut(s)	114, 119, 723
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	5 cut(s)	307, 829, 870, 911, 976
BstDEI	CTNAG	4 cut(s)	842, 919, 939, 1029
BstENI	CCTNNNNNAGG	1 cut(s)	907
BstF5I	GGATG	3 cut(s)	307, 332, 834
BstFNI	CGCG	1 cut(s)	502
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	141, 452
BstKTI	GATC	3 cut(s)	19, 484, 793
BstMAI	GTCTC	2 cut(s)	248, 929
BstMBI	GATC	3 cut(s)	16, 481, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	3 cut(s)	194, 228, 853
BstSCI	CCNGG	3 cut(s)	192, 226, 851
BstSFI	CTRYAG	1 cut(s)	907
BstUI	CGCG	1 cut(s)	502
BstV1I	GCAGC	5 cut(s)	334, 553, 813, 997, 1029
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	4 cut(s)	226, 831, 902, 1057
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	307, 332, 834
BtsIMutI	CAGTG	1 cut(s)	839
BveI	ACCTGC	1 cut(s)	1070
Cac8I	GCNNGC	5 cut(s)	307, 829, 870, 911, 976
CfoI	GCGC	2 cut(s)	141, 452
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	4 cut(s)	514, 549, 828, 863
CviAII	CATG	4 cut(s)	425, 583, 677, 811
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	4 cut(s)	842, 919, 939, 1029
DpnI	GATC	3 cut(s)	18, 483, 792
DpnII	GATC	3 cut(s)	16, 481, 790
EaeI	YGGCCR	2 cut(s)	829, 1055
Eam1104I	CTCTTC	3 cut(s)	114, 119, 723
EarI	CTCTTC	3 cut(s)	114, 119, 723
Eco130I	CCWWGG	1 cut(s)	928
Eco147I	AGGCCT	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	138, 371
Eco88I	CYCGRG	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	907
EcoRII	CCWGG	3 cut(s)	192, 226, 851
EcoT14I	CCWWGG	1 cut(s)	928
ErhI	CCWWGG	1 cut(s)	928
FaeI	CATG	4 cut(s)	428, 586, 680, 814
FaqI	GGGAC	2 cut(s)	386, 677
FatI	CATG	4 cut(s)	424, 582, 676, 810
FauI	CCCGC	1 cut(s)	701
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	6 cut(s)	177, 348, 567, 802, 986, 1018
FokI	GGATG	3 cut(s)	314, 339, 821
Fsp4HI	GCNGC	6 cut(s)	177, 348, 567, 802, 986, 1018
FspBI	CTAG	3 cut(s)	111, 794, 869
GlaI	GCGC	2 cut(s)	140, 451
GluI	GCNGC	6 cut(s)	177, 348, 567, 802, 986, 1018
GsuI	CTGGAG	2 cut(s)	155, 281
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	226, 831, 902, 1057
HapII	CCGG	1 cut(s)	1054
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	141, 452
Hin1II	CATG	4 cut(s)	428, 586, 680, 814
Hin6I	GCGC	2 cut(s)	139, 450
HinP1I	GCGC	2 cut(s)	139, 450
HincII	GTYRAC	3 cut(s)	40, 430, 445
HindII	GTYRAC	3 cut(s)	40, 430, 445
HinfI	GANTC	3 cut(s)	256, 587, 961
HpaII	CCGG	1 cut(s)	1054
HphI	GGTGA	3 cut(s)	83, 746, 1097
Hpy166II	GTNNAC	3 cut(s)	40, 430, 445
Hpy188I	TCNGA	4 cut(s)	118, 201, 289, 785
Hpy188III	TCNNGA	7 cut(s)	65, 260, 274, 299, 319, 794, 1080
Hpy8I	GTNNAC	3 cut(s)	40, 430, 445
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	913
HpyCH4III	ACNGT	4 cut(s)	84, 271, 382, 460
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	8 cut(s)	4, 305, 569, 761, 801, 909, 985, 1065
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	4 cut(s)	842, 919, 939, 1029
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	4 cut(s)	428, 586, 680, 814
HspAI	GCGC	2 cut(s)	139, 450
Kzo9I	GATC	3 cut(s)	16, 481, 790
LmnI	GCTCC	3 cut(s)	130, 136, 712
Lsp1109I	GCAGC	5 cut(s)	334, 553, 813, 997, 1029
LweI	GCATC	4 cut(s)	292, 317, 770, 961
MaeI	CTAG	3 cut(s)	111, 794, 869
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	2 cut(s)	914, 1085
MalI	GATC	3 cut(s)	18, 483, 792
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	3 cut(s)	16, 481, 790
MboII	GAAGA	4 cut(s)	131, 136, 740, 800
MfeI	CAATTG	2 cut(s)	747, 863
MflI	RGATCY	1 cut(s)	790
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	9 cut(s)	75, 160, 337, 537, 737, 747, 817, 863, 876
MluNI	TGGCCA	1 cut(s)	831
MlyI	GAGTC	1 cut(s)	250
Mox20I	TGGCCA	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	831
MseI	TTAA	5 cut(s)	221, 281, 627, 879, 1011
Msp20I	TGGCCA	1 cut(s)	831
MspI	CCGG	1 cut(s)	1054
MspR9I	CCNGG	3 cut(s)	194, 228, 853
MunI	CAATTG	2 cut(s)	747, 863
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	3 cut(s)	194, 228, 853
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	3 cut(s)	16, 481, 790
NheI	GCTAGC	1 cut(s)	868
NlaIII	CATG	4 cut(s)	428, 586, 680, 814
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	1085
NspV	TTCGAA	1 cut(s)	637
PasI	CCCWGGG	1 cut(s)	852
PceI	AGGCCT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	587, 961
PkrI	GCNGC	6 cut(s)	178, 349, 568, 803, 987, 1019
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	3 cut(s)	192, 226, 851
PspGI	CCWGG	3 cut(s)	192, 226, 851
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	5 cut(s)	221, 281, 627, 879, 1011
SatI	GCNGC	6 cut(s)	177, 348, 567, 802, 986, 1018
Sau3AI	GATC	3 cut(s)	16, 481, 790
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	3 cut(s)	194, 228, 853
SfaNI	GCATC	4 cut(s)	292, 317, 770, 961
SfcI	CTRYAG	1 cut(s)	907
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	9 cut(s)	75, 160, 337, 537, 737, 747, 817, 863, 876
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	3 cut(s)	176, 708, 925
SspMI	CTAG	3 cut(s)	111, 794, 869
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	3 cut(s)	192, 226, 851
StyI	CCWWGG	1 cut(s)	928
TaaI	ACNGT	4 cut(s)	84, 271, 382, 460
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	2 cut(s)	172, 637
TasI	AATT	9 cut(s)	75, 160, 337, 537, 737, 747, 817, 863, 876
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	587, 961
Tru1I	TTAA	5 cut(s)	221, 281, 627, 879, 1011
Tru9I	TTAA	5 cut(s)	221, 281, 627, 879, 1011
TscAI	CASTG	1 cut(s)	846
TseFI	GTSAC	1 cut(s)	1085
TseI	GCWGC	5 cut(s)	347, 566, 801, 985, 1017
Tsp45I	GTSAC	1 cut(s)	1085
TspDTI	ATGAA	3 cut(s)	176, 419, 827
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	1 cut(s)	846
VpaK11BI	GGWCC	1 cut(s)	357
XagI	CCTNNNNNAGG	1 cut(s)	907
XapI	RAATTY	3 cut(s)	75, 737, 817
XbaI	TCTAGA	1 cut(s)	793
XspI	CTAG	3 cut(s)	111, 794, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.