Rroxscaffold_4G00321810

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
51440859 .. 51448826
7968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321810.1

Sequence Viewer

Length: 1407 bp
ATGGCAGGGGAGAAGTTGGATGAAAATATTCCTTGCGAGGAAAATGGGACTGTAGAATCTTCGAATGGCAATGGTAATGGAGAAGCCCCTCAACAATCTCCAACTGTTCAGAAAGATGAGGATGAAGACAAAGATGTTTCAAAAAAGAAGAAGAAGAAAAATAAGAGCAAGAAAAAGAAAGCACAGGCAGAGCATACTGATCCACAATCTTTAACTGGGCAAACTGATCCACAATCTACAAGTAGGCAAACTGCTCCACAATCTACAAGTAGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCAGATGGGGAGTTTCCTGAGGGCGAAATTCAACAATACAGAGATGACAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACTGTCCGTAAGTTAATATCCGAGAATGGTCTGGAAGCTGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATTCAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTGGATTTTGGAACTCATGTTGATGGGCAAGGCATCATCCGAGTTATTGTTGACTTTACAGGTCATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGGCAGTCTGGTGCGCAAGGCTCCTGTAAATGGGGCTGCTGGGAAGGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTGAAAGGAGGGGAGCAGACAAAAATGGAAGAGGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCGTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCGTTGTCCAGCCCTATCCTCCTCTCTGTGATGTTAAGGGGAGCTATGTATCTCAGTTTGAGCATACAATTTTACTCCGGCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Protein Analysis

468

Amino Acids

52.1

Weight (kDa)

6.13

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 144 - 360 1.4e-18 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 938
Acc36I ACCTGC 1 cut(s) 1379
AccIII TCCGGA 1 cut(s) 981
AciI CCGC 1 cut(s) 1234
AclWI GGATC 4 cut(s) 194, 221, 275, 776
AcoI YGGCCR 2 cut(s) 1138, 1364
AcsI RAATTY 4 cut(s) 339, 628, 1126, 1270
AcuI CTGAAG 2 cut(s) 402, 635
AcvI CACGTG 1 cut(s) 803
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 4 cut(s) 319, 632, 953, 1240
AflII CTTAAG 1 cut(s) 1265
AgsI TTSAA 8 cut(s) 141, 344, 410, 601, 769, 794, 902, 991
AjnI CCWGG 3 cut(s) 456, 490, 1236
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AloI GAACNNNNNNTCC 2 cut(s) 1020, 1052
AluBI AGCT 3 cut(s) 440, 569, 1329
AluI AGCT 3 cut(s) 440, 569, 1329
Alw26I GTCTC 2 cut(s) 512, 1238
AlwI GGATC 4 cut(s) 194, 221, 275, 776
Aor13HI TCCGGA 1 cut(s) 981
AoxI GGCC 2 cut(s) 1138, 1364
ApeKI GCWGC 6 cut(s) 440, 611, 866, 959, 1110, 1156
ApoI RAATTY 4 cut(s) 339, 628, 1126, 1270
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 1160
AspLEI GCGC 3 cut(s) 405, 939, 1264
AspS9I GGNCC 2 cut(s) 621, 1007
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 1177
AvaII GGWCC 2 cut(s) 621, 1007
AvrII CCTAGG 1 cut(s) 1160
AxyI CCTNAGG 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 6 cut(s) 427, 598, 853, 946, 1122, 1143
BccI CCATC 3 cut(s) 295, 311, 689
BciT130I CCWGG 3 cut(s) 458, 492, 1238
BciVI GTATCC 1 cut(s) 989
BcoDI GTCTC 2 cut(s) 512, 1238
BfaI CTAG 3 cut(s) 1103, 1161, 1178
BfmI CTRYAG 3 cut(s) 51, 441, 1216
BfoI RGCGCY 2 cut(s) 406, 1265
BfrI CTTAAG 1 cut(s) 1265
BfuAI ACCTGC 1 cut(s) 1379
BfuI GTATCC 1 cut(s) 989
BglII AGATCT 1 cut(s) 1099
BisI GCNGC 6 cut(s) 441, 612, 867, 960, 1111, 1157
BlnI CCTAGG 1 cut(s) 1160
BlsI GCNGC 6 cut(s) 442, 613, 868, 961, 1112, 1158
Bme1390I CCNGG 3 cut(s) 458, 492, 1238
Bme18I GGWCC 2 cut(s) 621, 1007
BmgT120I GGNCC 2 cut(s) 621, 1007
BmiI GGNNCC 2 cut(s) 623, 945
BmrFI CCNGG 3 cut(s) 458, 492, 1238
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 4 cut(s) 581, 714, 1123, 1270
BmtI GCTAGC 1 cut(s) 1181
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 1238
BsaJI CCNNGG 2 cut(s) 1160, 1237
BsaWI WCCGGW 1 cut(s) 981
BsaXI ACNNNNNCTCC 2 cut(s) 1235, 1265
Bsc4I CCNNNNNNNGG 4 cut(s) 319, 632, 953, 1240
Bse118I RCCGGY 1 cut(s) 1136
Bse1I ACTGG 1 cut(s) 220
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 76, 573
BseAI TCCGGA 1 cut(s) 981
BseBI CCWGG 3 cut(s) 458, 492, 1238
BseDI CCNNGG 2 cut(s) 1160, 1237
BseGI GGATG 6 cut(s) 25, 127, 287, 596, 708, 1143
BseLI CCNNNNNNNGG 4 cut(s) 319, 632, 953, 1240
BseMI GCAATG 2 cut(s) 76, 573
BseMII CTCAG 3 cut(s) 321, 1142, 1352
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 1296
BseXI GCAGC 6 cut(s) 427, 598, 853, 946, 1122, 1143
BseYI CCCAGC 1 cut(s) 962
BsgI GTGCAG 1 cut(s) 1129
BshFI GGCC 2 cut(s) 1140, 1366
BsiSI CCGG 3 cut(s) 982, 1137, 1363
BslFI GGGAC 2 cut(s) 61, 650
BslI CCNNNNNNNGG 4 cut(s) 319, 632, 953, 1240
BsmAI GTCTC 2 cut(s) 512, 1238
BsmFI GGGAC 2 cut(s) 61, 650
BsmI GAATGC 2 cut(s) 578, 764
BsnI GGCC 2 cut(s) 1140, 1366
Bso31I GGTCTC 1 cut(s) 1238
Bsp119I TTCGAA 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 981
Bsp143I GATC 6 cut(s) 199, 226, 280, 304, 781, 1099
BspACI CCGC 1 cut(s) 1234
BspANI GGCC 2 cut(s) 1140, 1366
BspCNI CTCAG 3 cut(s) 322, 1143, 1351
BspEI TCCGGA 1 cut(s) 981
BspLI GGNNCC 2 cut(s) 623, 945
BspMAI CTGCAG 2 cut(s) 445, 1220
BspMI ACCTGC 1 cut(s) 1379
BspOI GCTAGC 1 cut(s) 1181
BspPI GGATC 4 cut(s) 194, 221, 275, 776
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 1265
BspTNI GGTCTC 1 cut(s) 1238
BsrDI GCAATG 2 cut(s) 76, 573
BsrFI RCCGGY 1 cut(s) 1136
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 1136
BssECI CCNNGG 2 cut(s) 1160, 1237
BssMI GATC 6 cut(s) 199, 226, 280, 304, 781, 1099
BssT1I CCWWGG 1 cut(s) 1160
Bst2UI CCWGG 3 cut(s) 458, 492, 1238
Bst4CI ACNGT 6 cut(s) 52, 106, 535, 646, 749, 760
Bst6I CTCTTC 3 cut(s) 378, 383, 1068
BstAFI CTTAAG 1 cut(s) 1265
BstBAI YACGTR 1 cut(s) 803
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 5 cut(s) 571, 1138, 1179, 1220, 1285
BstDEI CTNAG 3 cut(s) 330, 1151, 1338
BstF5I GGATG 6 cut(s) 25, 127, 287, 596, 708, 1143
BstH2I RGCGCY 2 cut(s) 406, 1265
BstHHI GCGC 3 cut(s) 405, 939, 1264
BstKTI GATC 6 cut(s) 202, 229, 283, 307, 784, 1102
BstMAI GTCTC 2 cut(s) 512, 1238
BstMBI GATC 6 cut(s) 199, 226, 280, 304, 781, 1099
BstMWI GCNNNNNNNGC 2 cut(s) 575, 1284
BstNI CCWGG 3 cut(s) 458, 492, 1238
BstSCI CCNGG 3 cut(s) 456, 490, 1236
BstSFI CTRYAG 3 cut(s) 51, 441, 1216
BstV1I GCAGC 6 cut(s) 427, 598, 853, 946, 1122, 1143
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 1099
BstYI RGATCY 1 cut(s) 1099
Bsu36I CCTNAGG 1 cut(s) 330
BsuI GTATCC 1 cut(s) 989
BsuRI GGCC 2 cut(s) 1140, 1366
BtgZI GCGATG 2 cut(s) 437, 1293
BtsCI GGATG 6 cut(s) 25, 127, 287, 596, 708, 1143
BtsIMutI CAGTG 2 cut(s) 531, 1148
BveI ACCTGC 1 cut(s) 1379
Cac8I GCNNGC 5 cut(s) 571, 1138, 1179, 1220, 1285
CfoI GCGC 3 cut(s) 405, 939, 1264
Cfr10I RCCGGY 1 cut(s) 1136
Cfr13I GGNCC 2 cut(s) 621, 1007
CseI GACGC 1 cut(s) 836
Csp6I GTAC 1 cut(s) 461
CviAII CATG 4 cut(s) 689, 883, 1022, 1120
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 3 cut(s) 330, 1151, 1338
DpnI GATC 6 cut(s) 201, 228, 282, 306, 783, 1101
DpnII GATC 6 cut(s) 199, 226, 280, 304, 781, 1099
DraI TTTAAA 1 cut(s) 486
EaeI YGGCCR 2 cut(s) 1138, 1364
Eam1104I CTCTTC 3 cut(s) 378, 383, 1068
EarI CTCTTC 3 cut(s) 378, 383, 1068
Eco130I CCWWGG 1 cut(s) 1160
Eco31I GGTCTC 1 cut(s) 1238
Eco47I GGWCC 2 cut(s) 621, 1007
Eco57I CTGAAG 2 cut(s) 402, 635
Eco72I CACGTG 1 cut(s) 803
Eco81I CCTNAGG 1 cut(s) 330
EcoRII CCWGG 3 cut(s) 456, 490, 1236
EcoT14I CCWWGG 1 cut(s) 1160
ErhI CCWWGG 1 cut(s) 1160
FaeI CATG 4 cut(s) 692, 886, 1025, 1123
FaqI GGGAC 2 cut(s) 61, 650
FatI CATG 4 cut(s) 688, 882, 1021, 1119
FauNDI CATATG 1 cut(s) 892
Fnu4HI GCNGC 6 cut(s) 441, 612, 867, 960, 1111, 1157
FokI GGATG 6 cut(s) 32, 134, 274, 603, 695, 1130
Fsp4HI GCNGC 6 cut(s) 441, 612, 867, 960, 1111, 1157
FspBI CTAG 3 cut(s) 1103, 1161, 1178
FspI TGCGCA 1 cut(s) 938
GlaI GCGC 3 cut(s) 404, 938, 1263
GluI GCNGC 6 cut(s) 441, 612, 867, 960, 1111, 1157
GsaI CCCAGC 1 cut(s) 966
HaeII RGCGCY 2 cut(s) 406, 1265
HaeIII GGCC 2 cut(s) 1140, 1366
HapII CCGG 3 cut(s) 982, 1137, 1363
HgaI GACGC 1 cut(s) 836
HhaI GCGC 3 cut(s) 405, 939, 1264
Hin1II CATG 4 cut(s) 692, 886, 1025, 1123
Hin6I GCGC 3 cut(s) 403, 937, 1262
HinP1I GCGC 3 cut(s) 403, 937, 1262
HincII GTYRAC 2 cut(s) 724, 745
HindII GTYRAC 2 cut(s) 724, 745
HinfI GANTC 3 cut(s) 56, 830, 887
HpaII CCGG 3 cut(s) 982, 1137, 1363
Hpy166II GTNNAC 2 cut(s) 724, 745
Hpy188I TCNGA 6 cut(s) 111, 382, 476, 553, 713, 1094
Hpy188III TCNNGA 6 cut(s) 329, 563, 834, 982, 1103, 1389
Hpy8I GTNNAC 2 cut(s) 724, 745
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 2 cut(s) 907, 961
HpyCH4III ACNGT 6 cut(s) 52, 106, 535, 646, 749, 760
HpyCH4IV ACGT 1 cut(s) 802
HpyCH4V TGCA 7 cut(s) 443, 578, 752, 869, 1110, 1218, 1374
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 1284
HpyF3I CTNAG 3 cut(s) 330, 1151, 1338
HpySE526I ACGT 1 cut(s) 802
Hsp92II CATG 4 cut(s) 692, 886, 1025, 1123
HspAI GCGC 3 cut(s) 403, 937, 1262
Kpn2I TCCGGA 1 cut(s) 981
KroI GCCGGC 1 cut(s) 1136
KroNI GCCGGC 1 cut(s) 1138
Kzo9I GATC 6 cut(s) 199, 226, 280, 304, 781, 1099
LmnI GCTCC 5 cut(s) 259, 400, 949, 1057, 1326
Lsp1109I GCAGC 6 cut(s) 427, 598, 853, 946, 1122, 1143
LweI GCATC 4 cut(s) 581, 714, 1123, 1270
MaeI CTAG 3 cut(s) 1103, 1161, 1178
MaeII ACGT 1 cut(s) 802
MalI GATC 6 cut(s) 201, 228, 282, 306, 783, 1101
MboI GATC 6 cut(s) 199, 226, 280, 304, 781, 1099
MboII GAAGA 9 cut(s) 51, 137, 160, 163, 166, 395, 400, 1085, 1109
MfeI CAATTG 1 cut(s) 1172
MflI RGATCY 1 cut(s) 1099
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 2 cut(s) 125, 378
MroI TCCGGA 1 cut(s) 981
MroNI GCCGGC 1 cut(s) 1136
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 7 cut(s) 212, 485, 545, 972, 1188, 1266, 1320
MslI CAYNNNNRTG 1 cut(s) 693
MspCI CTTAAG 1 cut(s) 1265
MspI CCGG 3 cut(s) 982, 1137, 1363
MspR9I CCNGG 3 cut(s) 458, 492, 1238
MunI CAATTG 1 cut(s) 1172
Mva1269I GAATGC 2 cut(s) 578, 764
MvaI CCWGG 3 cut(s) 458, 492, 1238
MwoI GCNNNNNNNGC 2 cut(s) 575, 1284
NaeI GCCGGC 1 cut(s) 1138
NdeI CATATG 1 cut(s) 892
NdeII GATC 6 cut(s) 199, 226, 280, 304, 781, 1099
NgoMIV GCCGGC 1 cut(s) 1136
NheI GCTAGC 1 cut(s) 1177
NlaIII CATG 4 cut(s) 692, 886, 1025, 1123
NlaIV GGNNCC 2 cut(s) 623, 945
NsbI TGCGCA 1 cut(s) 938
NspV TTCGAA 1 cut(s) 62
PctI GAATGC 2 cut(s) 578, 764
PdiI GCCGGC 1 cut(s) 1138
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 56, 887
PkrI GCNGC 6 cut(s) 442, 613, 868, 961, 1112, 1158
PleI GAGTC 1 cut(s) 838
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
PpsI GAGTC 1 cut(s) 838
Ppu21I YACGTR 1 cut(s) 803
Psp6I CCWGG 3 cut(s) 456, 490, 1236
PspCI CACGTG 1 cut(s) 803
PspFI CCCAGC 1 cut(s) 962
PspGI CCWGG 3 cut(s) 456, 490, 1236
PspN4I GGNNCC 2 cut(s) 623, 945
PspPI GGNCC 2 cut(s) 621, 1007
PstI CTGCAG 2 cut(s) 445, 1220
PsuI RGATCY 1 cut(s) 1099
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 7 cut(s) 212, 485, 545, 972, 1188, 1266, 1320
SatI GCNGC 6 cut(s) 441, 612, 867, 960, 1111, 1157
Sau3AI GATC 6 cut(s) 199, 226, 280, 304, 781, 1099
Sau96I GGNCC 2 cut(s) 621, 1007
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 3 cut(s) 458, 492, 1238
SfaNI GCATC 4 cut(s) 581, 714, 1123, 1270
SfcI CTRYAG 3 cut(s) 51, 441, 1216
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 2 cut(s) 621, 1007
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 1265
SmoI CTYRAG 1 cut(s) 1265
SsiI CCGC 1 cut(s) 1234
SspI AATATT 1 cut(s) 28
SspMI CTAG 3 cut(s) 1103, 1161, 1178
StyD4I CCNGG 3 cut(s) 456, 490, 1236
StyI CCWWGG 1 cut(s) 1160
TaaI ACNGT 6 cut(s) 52, 106, 535, 646, 749, 760
TaiI ACGT 1 cut(s) 805
TaqI TCGA 2 cut(s) 62, 436
TfiI GAWTC 2 cut(s) 56, 887
Tru1I TTAA 7 cut(s) 212, 485, 545, 972, 1188, 1266, 1320
Tru9I TTAA 7 cut(s) 212, 485, 545, 972, 1188, 1266, 1320
TscAI CASTG 2 cut(s) 538, 1155
TseI GCWGC 6 cut(s) 440, 611, 866, 959, 1110, 1156
TspDTI ATGAA 5 cut(s) 36, 138, 440, 683, 1136
TspGWI ACGGA 2 cut(s) 478, 527
TspRI CASTG 2 cut(s) 538, 1155
Vha464I CTTAAG 1 cut(s) 1265
VpaK11BI GGWCC 2 cut(s) 621, 1007
XapI RAATTY 4 cut(s) 339, 628, 1126, 1270
XbaI TCTAGA 1 cut(s) 1102
XcmI CCANNNNNNNNNTGG 2 cut(s) 1022, 1255
XmaJI CCTAGG 1 cut(s) 1160
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 1103, 1161, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.