Rw1G007040

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
14818674 .. 14826016
7343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G007040.1

Sequence Viewer

Length: 1362 bp
ATGGCAGGGGAAAAATTGGATGAAAATATTCCTTGCGAAGAAAATGGGACTGTAGAATCTTCGAATGGCAATGGTAATGGAGAAGCCGCTGAACAATCTCCAACTGTTGAGAAAGATGAGGATGACGACAAAGATGTTTCAAAAAAGAAGAAGAAGAAAAATAAGAGCAAGAAAAAGAAAGCACAGGCAGAGCATACTGATCCACAATCTTTAAGTGGGCAAACTGATCCACAATCTACAACTAGGCAAACTGCTCCACAATCTACAAGTAGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGAGGGCGAAATTCAACAATACAGAGATGACAACTCTTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACCTTGGAGAACACAGTCCGTAAGTTAATATCCGAGAATGGTCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTAGACTTTGGAACTCATGTTGATGGTCATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTGAAAGGAGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTTGCGATTGAAACTTTCGCATCAACTGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCGTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCATTGTCCAGCCCTATCCTCCTCTCTGTGATGTTAAAGGGAGCTATGTATCTCAGTTTGAGCATACAATTTTACTCCGCCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Protein Analysis

453

Amino Acids

50.68

Weight (kDa)

5.61

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 144 - 347 1.7e-27 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1334
AccIII TCCGGA 1 cut(s) 900
AciI CCGC 3 cut(s) 87, 1189, 1318
AclWI GGATC 4 cut(s) 194, 221, 275, 740
AcoI YGGCCR 1 cut(s) 1093
AcsI RAATTY 4 cut(s) 339, 1001, 1081, 1225
AcuI CTGAAG 2 cut(s) 402, 635
AcvI CACGTG 1 cut(s) 767
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 3 cut(s) 319, 632, 1195
AflII CTTAAG 1 cut(s) 1220
AgsI TTSAA 9 cut(s) 141, 344, 410, 601, 733, 758, 866, 910, 1016
AjnI CCWGG 3 cut(s) 456, 490, 1191
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AloI GAACNNNNNNTCC 2 cut(s) 939, 971
AluBI AGCT 2 cut(s) 440, 1284
AluI AGCT 2 cut(s) 440, 1284
Alw26I GTCTC 2 cut(s) 512, 1193
AlwI GGATC 4 cut(s) 194, 221, 275, 740
Aor13HI TCCGGA 1 cut(s) 900
AoxI GGCC 1 cut(s) 1093
ApeKI GCWGC 5 cut(s) 440, 611, 830, 1065, 1111
ApoI RAATTY 4 cut(s) 339, 1001, 1081, 1225
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 1115
AspLEI GCGC 2 cut(s) 405, 1219
AspS9I GGNCC 2 cut(s) 621, 926
AsuHPI GGTGA 1 cut(s) 1010
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 1132
AvaII GGWCC 2 cut(s) 621, 926
AvrII CCTAGG 1 cut(s) 1115
AxyI CCTNAGG 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 767
BbvI GCAGC 5 cut(s) 427, 598, 817, 1077, 1098
BccI CCATC 2 cut(s) 295, 689
BciT130I CCWGG 3 cut(s) 458, 492, 1193
BciVI GTATCC 1 cut(s) 908
BcoDI GTCTC 2 cut(s) 512, 1193
BfaI CTAG 4 cut(s) 243, 1058, 1116, 1133
BfmI CTRYAG 3 cut(s) 51, 441, 1171
BfoI RGCGCY 2 cut(s) 406, 1220
BfrI CTTAAG 1 cut(s) 1220
BfuAI ACCTGC 1 cut(s) 1334
BfuI GTATCC 1 cut(s) 908
BglII AGATCT 1 cut(s) 1054
BisI GCNGC 6 cut(s) 87, 441, 612, 831, 1066, 1112
BlnI CCTAGG 1 cut(s) 1115
BlsI GCNGC 6 cut(s) 88, 442, 613, 832, 1067, 1113
Bme1390I CCNGG 3 cut(s) 458, 492, 1193
Bme18I GGWCC 2 cut(s) 621, 926
BmgT120I GGNCC 2 cut(s) 621, 926
BmiI GGNNCC 1 cut(s) 623
BmrFI CCNGG 3 cut(s) 458, 492, 1193
BmrI ACTGGG 1 cut(s) 1041
BmsI GCATC 4 cut(s) 581, 1034, 1078, 1225
BmtI GCTAGC 1 cut(s) 1136
BmuI ACTGGG 1 cut(s) 1041
Bpu14I TTCGAA 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 767
BsaI GGTCTC 2 cut(s) 512, 1193
BsaJI CCNNGG 3 cut(s) 522, 1115, 1192
BsaWI WCCGGW 1 cut(s) 900
BsaXI ACNNNNNCTCC 2 cut(s) 1190, 1220
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 632, 1195
Bse118I RCCGGY 1 cut(s) 1091
Bse1I ACTGG 1 cut(s) 1036
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 76, 573
BseAI TCCGGA 1 cut(s) 900
BseBI CCWGG 3 cut(s) 458, 492, 1193
BseDI CCNNGG 3 cut(s) 522, 1115, 1192
BseGI GGATG 5 cut(s) 25, 127, 287, 596, 1098
BseLI CCNNNNNNNGG 3 cut(s) 319, 632, 1195
BseMI GCAATG 2 cut(s) 76, 573
BseMII CTCAG 3 cut(s) 321, 1097, 1307
BseNI ACTGG 1 cut(s) 1036
BseRI GAGGAG 1 cut(s) 1251
BseXI GCAGC 5 cut(s) 427, 598, 817, 1077, 1098
BsgI GTGCAG 1 cut(s) 1084
BshFI GGCC 1 cut(s) 1095
BsiSI CCGG 2 cut(s) 901, 1092
BslFI GGGAC 2 cut(s) 61, 650
BslI CCNNNNNNNGG 3 cut(s) 319, 632, 1195
BsmAI GTCTC 2 cut(s) 512, 1193
BsmFI GGGAC 2 cut(s) 61, 650
BsmI GAATGC 2 cut(s) 578, 728
BsnI GGCC 1 cut(s) 1095
Bso31I GGTCTC 2 cut(s) 512, 1193
Bsp119I TTCGAA 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 900
Bsp143I GATC 6 cut(s) 199, 226, 280, 304, 745, 1054
BspACI CCGC 3 cut(s) 87, 1189, 1318
BspANI GGCC 1 cut(s) 1095
BspCNI CTCAG 3 cut(s) 322, 1098, 1306
BspEI TCCGGA 1 cut(s) 900
BspLI GGNNCC 1 cut(s) 623
BspMAI CTGCAG 2 cut(s) 445, 1175
BspMI ACCTGC 1 cut(s) 1334
BspOI GCTAGC 1 cut(s) 1136
BspPI GGATC 4 cut(s) 194, 221, 275, 740
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 1220
BspTNI GGTCTC 2 cut(s) 512, 1193
BsrDI GCAATG 2 cut(s) 76, 573
BsrFI RCCGGY 1 cut(s) 1091
BsrI ACTGG 1 cut(s) 1036
BssAI RCCGGY 1 cut(s) 1091
BssECI CCNNGG 3 cut(s) 522, 1115, 1192
BssMI GATC 6 cut(s) 199, 226, 280, 304, 745, 1054
BssT1I CCWWGG 2 cut(s) 522, 1115
Bst2UI CCWGG 3 cut(s) 458, 492, 1193
Bst4CI ACNGT 6 cut(s) 52, 106, 535, 646, 713, 724
Bst6I CTCTTC 3 cut(s) 378, 383, 987
BstAFI CTTAAG 1 cut(s) 1220
BstAPI GCANNNNNTGC 1 cut(s) 575
BstBAI YACGTR 1 cut(s) 767
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 5 cut(s) 571, 1093, 1134, 1175, 1240
BstDEI CTNAG 3 cut(s) 330, 1106, 1293
BstF5I GGATG 5 cut(s) 25, 127, 287, 596, 1098
BstH2I RGCGCY 2 cut(s) 406, 1220
BstHHI GCGC 2 cut(s) 405, 1219
BstKTI GATC 6 cut(s) 202, 229, 283, 307, 748, 1057
BstMAI GTCTC 2 cut(s) 512, 1193
BstMBI GATC 6 cut(s) 199, 226, 280, 304, 745, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 575, 1239, 1326
BstNI CCWGG 3 cut(s) 458, 492, 1193
BstSCI CCNGG 3 cut(s) 456, 490, 1191
BstSFI CTRYAG 3 cut(s) 51, 441, 1171
BstV1I GCAGC 5 cut(s) 427, 598, 817, 1077, 1098
BstX2I RGATCY 1 cut(s) 1054
BstYI RGATCY 1 cut(s) 1054
Bsu36I CCTNAGG 1 cut(s) 330
BsuI GTATCC 1 cut(s) 908
BsuRI GGCC 1 cut(s) 1095
BtgZI GCGATG 2 cut(s) 437, 1248
BtsCI GGATG 5 cut(s) 25, 127, 287, 596, 1098
BtsIMutI CAGTG 1 cut(s) 1103
BveI ACCTGC 1 cut(s) 1334
Cac8I GCNNGC 5 cut(s) 571, 1093, 1134, 1175, 1240
CfoI GCGC 2 cut(s) 405, 1219
Cfr10I RCCGGY 1 cut(s) 1091
Cfr13I GGNCC 2 cut(s) 621, 926
CseI GACGC 1 cut(s) 800
Csp6I GTAC 1 cut(s) 461
CviAII CATG 5 cut(s) 317, 689, 847, 941, 1075
CviJI RGCY 9 cut(s) 86, 440, 490, 761, 1068, 1095, 1111, 1252, 1284
CviKI_1 RGCY 9 cut(s) 86, 440, 490, 761, 1068, 1095, 1111, 1252, 1284
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 3 cut(s) 330, 1106, 1293
DpnI GATC 6 cut(s) 201, 228, 282, 306, 747, 1056
DpnII GATC 6 cut(s) 199, 226, 280, 304, 745, 1054
DraI TTTAAA 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 1093
Eam1104I CTCTTC 3 cut(s) 378, 383, 987
EarI CTCTTC 3 cut(s) 378, 383, 987
EciI GGCGGA 1 cut(s) 1307
Eco130I CCWWGG 2 cut(s) 522, 1115
Eco31I GGTCTC 2 cut(s) 512, 1193
Eco47I GGWCC 2 cut(s) 621, 926
Eco57I CTGAAG 2 cut(s) 402, 635
Eco72I CACGTG 1 cut(s) 767
Eco81I CCTNAGG 1 cut(s) 330
EcoRII CCWGG 3 cut(s) 456, 490, 1191
EcoT14I CCWWGG 2 cut(s) 522, 1115
ErhI CCWWGG 2 cut(s) 522, 1115
FaeI CATG 5 cut(s) 320, 692, 850, 944, 1078
FaqI GGGAC 2 cut(s) 61, 650
FatI CATG 5 cut(s) 316, 688, 846, 940, 1074
FauNDI CATATG 1 cut(s) 856
Fnu4HI GCNGC 6 cut(s) 87, 441, 612, 831, 1066, 1112
FokI GGATG 5 cut(s) 32, 134, 274, 603, 1085
Fsp4HI GCNGC 6 cut(s) 87, 441, 612, 831, 1066, 1112
FspBI CTAG 4 cut(s) 243, 1058, 1116, 1133
GlaI GCGC 2 cut(s) 404, 1218
GluI GCNGC 6 cut(s) 87, 441, 612, 831, 1066, 1112
HaeII RGCGCY 2 cut(s) 406, 1220
HaeIII GGCC 1 cut(s) 1095
HapII CCGG 2 cut(s) 901, 1092
HgaI GACGC 1 cut(s) 800
HhaI GCGC 2 cut(s) 405, 1219
Hin1II CATG 5 cut(s) 320, 692, 850, 944, 1078
Hin6I GCGC 2 cut(s) 403, 1217
HinP1I GCGC 2 cut(s) 403, 1217
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 3 cut(s) 56, 794, 851
HpaII CCGG 2 cut(s) 901, 1092
HphI GGTGA 1 cut(s) 1010
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 4 cut(s) 382, 476, 553, 1049
Hpy188III TCNNGA 6 cut(s) 329, 563, 798, 901, 1058, 1344
Hpy8I GTNNAC 1 cut(s) 709
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 1 cut(s) 871
HpyCH4III ACNGT 6 cut(s) 52, 106, 535, 646, 713, 724
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 7 cut(s) 443, 578, 716, 833, 1065, 1173, 1329
HpyF10VI GCNNNNNNNGC 3 cut(s) 575, 1239, 1326
HpyF3I CTNAG 3 cut(s) 330, 1106, 1293
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 5 cut(s) 320, 692, 850, 944, 1078
HspAI GCGC 2 cut(s) 403, 1217
Kpn2I TCCGGA 1 cut(s) 900
KroI GCCGGC 1 cut(s) 1091
KroNI GCCGGC 1 cut(s) 1093
Kzo9I GATC 6 cut(s) 199, 226, 280, 304, 745, 1054
LmnI GCTCC 4 cut(s) 259, 400, 976, 1281
Lsp1109I GCAGC 5 cut(s) 427, 598, 817, 1077, 1098
LweI GCATC 4 cut(s) 581, 1034, 1078, 1225
MaeI CTAG 4 cut(s) 243, 1058, 1116, 1133
MaeII ACGT 1 cut(s) 766
MalI GATC 6 cut(s) 201, 228, 282, 306, 747, 1056
MboI GATC 6 cut(s) 199, 226, 280, 304, 745, 1054
MboII GAAGA 9 cut(s) 50, 51, 160, 163, 166, 395, 400, 1004, 1064
MfeI CAATTG 1 cut(s) 1127
MflI RGATCY 1 cut(s) 1054
MlyI GAGTC 1 cut(s) 803
MmeI TCCRAC 2 cut(s) 125, 378
MroI TCCGGA 1 cut(s) 900
MroNI GCCGGC 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 7 cut(s) 212, 485, 545, 891, 1143, 1221, 1275
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 89
MspCI CTTAAG 1 cut(s) 1220
MspI CCGG 2 cut(s) 901, 1092
MspR9I CCNGG 3 cut(s) 458, 492, 1193
MunI CAATTG 1 cut(s) 1127
Mva1269I GAATGC 2 cut(s) 578, 728
MvaI CCWGG 3 cut(s) 458, 492, 1193
MwoI GCNNNNNNNGC 3 cut(s) 575, 1239, 1326
NaeI GCCGGC 1 cut(s) 1093
NdeI CATATG 1 cut(s) 856
NdeII GATC 6 cut(s) 199, 226, 280, 304, 745, 1054
NgoMIV GCCGGC 1 cut(s) 1091
NheI GCTAGC 1 cut(s) 1132
NlaIII CATG 5 cut(s) 320, 692, 850, 944, 1078
NlaIV GGNNCC 1 cut(s) 623
NspV TTCGAA 1 cut(s) 62
PctI GAATGC 2 cut(s) 578, 728
PdiI GCCGGC 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 56, 851
PkrI GCNGC 6 cut(s) 88, 442, 613, 832, 1067, 1113
PleI GAGTC 1 cut(s) 802
PmaCI CACGTG 1 cut(s) 767
PmlI CACGTG 1 cut(s) 767
PpsI GAGTC 1 cut(s) 802
Ppu21I YACGTR 1 cut(s) 767
Psp6I CCWGG 3 cut(s) 456, 490, 1191
PspCI CACGTG 1 cut(s) 767
PspGI CCWGG 3 cut(s) 456, 490, 1191
PspN4I GGNNCC 1 cut(s) 623
PspPI GGNCC 2 cut(s) 621, 926
PstI CTGCAG 2 cut(s) 445, 1175
PsuI RGATCY 1 cut(s) 1054
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 7 cut(s) 212, 485, 545, 891, 1143, 1221, 1275
SatI GCNGC 6 cut(s) 87, 441, 612, 831, 1066, 1112
Sau3AI GATC 6 cut(s) 199, 226, 280, 304, 745, 1054
Sau96I GGNCC 2 cut(s) 621, 926
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 3 cut(s) 458, 492, 1193
SfaNI GCATC 4 cut(s) 581, 1034, 1078, 1225
SfcI CTRYAG 3 cut(s) 51, 441, 1171
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 2 cut(s) 621, 926
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 1220
SmoI CTYRAG 1 cut(s) 1220
SsiI CCGC 3 cut(s) 87, 1189, 1318
SspI AATATT 1 cut(s) 28
SspMI CTAG 4 cut(s) 243, 1058, 1116, 1133
StyD4I CCNGG 3 cut(s) 456, 490, 1191
StyI CCWWGG 2 cut(s) 522, 1115
TaaI ACNGT 6 cut(s) 52, 106, 535, 646, 713, 724
TaiI ACGT 1 cut(s) 769
TaqI TCGA 2 cut(s) 62, 436
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 56, 851
Tru1I TTAA 7 cut(s) 212, 485, 545, 891, 1143, 1221, 1275
Tru9I TTAA 7 cut(s) 212, 485, 545, 891, 1143, 1221, 1275
TscAI CASTG 1 cut(s) 1110
TseI GCWGC 5 cut(s) 440, 611, 830, 1065, 1111
TspDTI ATGAA 4 cut(s) 36, 440, 683, 1091
TspGWI ACGGA 2 cut(s) 478, 527
TspRI CASTG 1 cut(s) 1110
Vha464I CTTAAG 1 cut(s) 1220
VpaK11BI GGWCC 2 cut(s) 621, 926
XapI RAATTY 4 cut(s) 339, 1001, 1081, 1225
XbaI TCTAGA 1 cut(s) 1057
XcmI CCANNNNNNNNNTGG 2 cut(s) 941, 1210
XmaJI CCTAGG 1 cut(s) 1115
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 4 cut(s) 243, 1058, 1116, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.