RLG00000029939

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
51716058 .. 51724431
8374 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029939

Sequence Viewer

Length: 1335 bp
ATGGCAGGGGAGAAGTTGGATGAAAATATTCCTTGCGAGGAAAATGGGACTGTAGAATCTTTGAATGGCAATGGTAATGGAGAAGACGCTCAACAATCTCCAACTGTTGAGAAAGATGAGGATGAAGACAAAGATGTTTCAAAAAAGAAGAAGAAGAAAAATAAGAGCAAGAAAAAGAAAGCACAGGCAGAGCATACTGATCCACAATCTACAAGTAGGCAAACTGCTCCACAATCTACAAGCAGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGAGGGCGAAATTCAACAATACAGAGATGACAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAATTGGAGCGACTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCCGAGAATGGTCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTAGATTTTGGAACTCATGTTGATGGTCATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCATTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAGTCAGTTCCCATTGTGAAAGGAGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTTGCGATTGAAACTTTCGCATCAACTGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCATTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCATTGTCCAGCCCTATCCTCCTCTCTGTGATGTTAAAGGGAGCTATGTATCTCAGTTTGAGCATACAATTTTACTCCGGCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Protein Analysis

445

Amino Acids

49.87

Weight (kDa)

5.69

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 135 - 338 1.7e-27 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1307
AccIII TCCGGA 1 cut(s) 873
AciI CCGC 1 cut(s) 1162
AclWI GGATC 3 cut(s) 194, 248, 713
AcoI YGGCCR 2 cut(s) 1066, 1292
AcsI RAATTY 4 cut(s) 312, 974, 1054, 1198
AcuI CTGAAG 2 cut(s) 375, 608
AcvI CACGTG 1 cut(s) 740
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 3 cut(s) 292, 605, 1168
AflII CTTAAG 1 cut(s) 1193
AjnI CCWGG 3 cut(s) 429, 463, 1164
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AloI GAACNNNNNNTCC 2 cut(s) 912, 944
AluBI AGCT 2 cut(s) 413, 1257
AluI AGCT 2 cut(s) 413, 1257
Alw26I GTCTC 2 cut(s) 485, 1166
AlwI GGATC 3 cut(s) 194, 248, 713
Aor13HI TCCGGA 1 cut(s) 873
AoxI GGCC 2 cut(s) 1066, 1292
ApeKI GCWGC 5 cut(s) 413, 584, 803, 1038, 1084
ApoI RAATTY 4 cut(s) 312, 974, 1054, 1198
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 1088
AspLEI GCGC 1 cut(s) 1192
AspS9I GGNCC 2 cut(s) 594, 899
AsuHPI GGTGA 1 cut(s) 983
AsuNHI GCTAGC 1 cut(s) 1105
AvaII GGWCC 2 cut(s) 594, 899
AvrII CCTAGG 1 cut(s) 1088
AxyI CCTNAGG 1 cut(s) 303
BbrPI CACGTG 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 90, 132
BbvI GCAGC 5 cut(s) 400, 571, 790, 1050, 1071
BccI CCATC 2 cut(s) 268, 662
BciT130I CCWGG 3 cut(s) 431, 465, 1166
BciVI GTATCC 1 cut(s) 881
BcoDI GTCTC 2 cut(s) 485, 1166
BfaI CTAG 3 cut(s) 1031, 1089, 1106
BfmI CTRYAG 3 cut(s) 51, 414, 1144
BfoI RGCGCY 1 cut(s) 1193
BfrI CTTAAG 1 cut(s) 1193
BfuAI ACCTGC 1 cut(s) 1307
BfuI GTATCC 1 cut(s) 881
BglII AGATCT 1 cut(s) 1027
BisI GCNGC 5 cut(s) 414, 585, 804, 1039, 1085
BlnI CCTAGG 1 cut(s) 1088
BlsI GCNGC 5 cut(s) 415, 586, 805, 1040, 1086
Bme1390I CCNGG 3 cut(s) 431, 465, 1166
Bme18I GGWCC 2 cut(s) 594, 899
BmgT120I GGNCC 2 cut(s) 594, 899
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 3 cut(s) 431, 465, 1166
BmrI ACTGGG 1 cut(s) 1014
BmsI GCATC 4 cut(s) 554, 1007, 1051, 1198
BmtI GCTAGC 1 cut(s) 1109
BmuI ACTGGG 1 cut(s) 1014
BpiI GAAGAC 2 cut(s) 90, 132
BsaAI YACGTR 1 cut(s) 740
BsaI GGTCTC 1 cut(s) 1166
BsaJI CCNNGG 2 cut(s) 1088, 1165
BsaWI WCCGGW 1 cut(s) 873
BsaXI ACNNNNNCTCC 2 cut(s) 1163, 1193
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 605, 1168
Bse118I RCCGGY 1 cut(s) 1064
Bse1I ACTGG 1 cut(s) 1009
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 2 cut(s) 76, 546
BseAI TCCGGA 1 cut(s) 873
BseBI CCWGG 3 cut(s) 431, 465, 1166
BseDI CCNNGG 2 cut(s) 1088, 1165
BseGI GGATG 5 cut(s) 25, 127, 260, 569, 1071
BseLI CCNNNNNNNGG 3 cut(s) 292, 605, 1168
BseMI GCAATG 2 cut(s) 76, 546
BseMII CTCAG 3 cut(s) 294, 1070, 1280
BseNI ACTGG 1 cut(s) 1009
BseRI GAGGAG 1 cut(s) 1224
BseXI GCAGC 5 cut(s) 400, 571, 790, 1050, 1071
BsgI GTGCAG 1 cut(s) 1057
BshFI GGCC 2 cut(s) 1068, 1294
BsiSI CCGG 3 cut(s) 874, 1065, 1291
BslFI GGGAC 2 cut(s) 61, 623
BslI CCNNNNNNNGG 3 cut(s) 292, 605, 1168
BsmAI GTCTC 2 cut(s) 485, 1166
BsmFI GGGAC 2 cut(s) 61, 623
BsmI GAATGC 3 cut(s) 551, 701, 1139
BsnI GGCC 2 cut(s) 1068, 1294
Bso31I GGTCTC 1 cut(s) 1166
Bsp13I TCCGGA 1 cut(s) 873
Bsp143I GATC 5 cut(s) 199, 253, 277, 718, 1027
BspACI CCGC 1 cut(s) 1162
BspANI GGCC 2 cut(s) 1068, 1294
BspCNI CTCAG 3 cut(s) 295, 1071, 1279
BspEI TCCGGA 1 cut(s) 873
BspLI GGNNCC 1 cut(s) 596
BspMAI CTGCAG 2 cut(s) 418, 1148
BspMI ACCTGC 1 cut(s) 1307
BspOI GCTAGC 1 cut(s) 1109
BspPI GGATC 3 cut(s) 194, 248, 713
BspTI CTTAAG 1 cut(s) 1193
BspTNI GGTCTC 1 cut(s) 1166
BsrDI GCAATG 2 cut(s) 76, 546
BsrFI RCCGGY 1 cut(s) 1064
BsrI ACTGG 1 cut(s) 1009
BssAI RCCGGY 1 cut(s) 1064
BssECI CCNNGG 2 cut(s) 1088, 1165
BssMI GATC 5 cut(s) 199, 253, 277, 718, 1027
BssT1I CCWWGG 1 cut(s) 1088
Bst2UI CCWGG 3 cut(s) 431, 465, 1166
Bst4CI ACNGT 6 cut(s) 52, 106, 508, 619, 686, 697
Bst6I CTCTTC 3 cut(s) 351, 356, 960
BstAFI CTTAAG 1 cut(s) 1193
BstAPI GCANNNNNTGC 1 cut(s) 548
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 6 cut(s) 245, 544, 1066, 1107, 1148, 1213
BstDEI CTNAG 3 cut(s) 303, 1079, 1266
BstF5I GGATG 5 cut(s) 25, 127, 260, 569, 1071
BstH2I RGCGCY 1 cut(s) 1193
BstHHI GCGC 1 cut(s) 1192
BstKTI GATC 5 cut(s) 202, 256, 280, 721, 1030
BstMAI GTCTC 2 cut(s) 485, 1166
BstMBI GATC 5 cut(s) 199, 253, 277, 718, 1027
BstMWI GCNNNNNNNGC 2 cut(s) 548, 1212
BstNI CCWGG 3 cut(s) 431, 465, 1166
BstSCI CCNGG 3 cut(s) 429, 463, 1164
BstSFI CTRYAG 3 cut(s) 51, 414, 1144
BstV1I GCAGC 5 cut(s) 400, 571, 790, 1050, 1071
BstV2I GAAGAC 2 cut(s) 90, 132
BstX2I RGATCY 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 1027
Bsu36I CCTNAGG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 2 cut(s) 1068, 1294
BtgZI GCGATG 2 cut(s) 410, 1221
BtsCI GGATG 5 cut(s) 25, 127, 260, 569, 1071
BtsIMutI CAGTG 1 cut(s) 1076
BveI ACCTGC 1 cut(s) 1307
Cac8I GCNNGC 6 cut(s) 245, 544, 1066, 1107, 1148, 1213
CfoI GCGC 1 cut(s) 1192
Cfr10I RCCGGY 1 cut(s) 1064
Cfr13I GGNCC 2 cut(s) 594, 899
CseI GACGC 2 cut(s) 95, 773
Csp6I GTAC 1 cut(s) 434
CviAII CATG 5 cut(s) 290, 662, 820, 914, 1048
CviJI RGCY 9 cut(s) 413, 463, 734, 1041, 1068, 1084, 1225, 1257, 1294
CviKI_1 RGCY 9 cut(s) 413, 463, 734, 1041, 1068, 1084, 1225, 1257, 1294
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 3 cut(s) 303, 1079, 1266
DpnI GATC 5 cut(s) 201, 255, 279, 720, 1029
DpnII GATC 5 cut(s) 199, 253, 277, 718, 1027
DraI TTTAAA 1 cut(s) 459
EaeI YGGCCR 2 cut(s) 1066, 1292
Eam1104I CTCTTC 3 cut(s) 351, 356, 960
EarI CTCTTC 3 cut(s) 351, 356, 960
Eco130I CCWWGG 1 cut(s) 1088
Eco31I GGTCTC 1 cut(s) 1166
Eco47I GGWCC 2 cut(s) 594, 899
Eco57I CTGAAG 2 cut(s) 375, 608
Eco72I CACGTG 1 cut(s) 740
Eco81I CCTNAGG 1 cut(s) 303
EcoRII CCWGG 3 cut(s) 429, 463, 1164
EcoT14I CCWWGG 1 cut(s) 1088
ErhI CCWWGG 1 cut(s) 1088
FaeI CATG 5 cut(s) 293, 665, 823, 917, 1051
FaqI GGGAC 2 cut(s) 61, 623
FatI CATG 5 cut(s) 289, 661, 819, 913, 1047
FauNDI CATATG 1 cut(s) 829
Fnu4HI GCNGC 5 cut(s) 414, 585, 804, 1039, 1085
FokI GGATG 5 cut(s) 32, 134, 247, 576, 1058
Fsp4HI GCNGC 5 cut(s) 414, 585, 804, 1039, 1085
FspBI CTAG 3 cut(s) 1031, 1089, 1106
GlaI GCGC 1 cut(s) 1191
GluI GCNGC 5 cut(s) 414, 585, 804, 1039, 1085
HaeII RGCGCY 1 cut(s) 1193
HaeIII GGCC 2 cut(s) 1068, 1294
HapII CCGG 3 cut(s) 874, 1065, 1291
HgaI GACGC 2 cut(s) 95, 773
HhaI GCGC 1 cut(s) 1192
Hin1II CATG 5 cut(s) 293, 665, 823, 917, 1051
Hin6I GCGC 1 cut(s) 1190
HinP1I GCGC 1 cut(s) 1190
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HinfI GANTC 3 cut(s) 56, 767, 824
HpaII CCGG 3 cut(s) 874, 1065, 1291
HphI GGTGA 1 cut(s) 983
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 4 cut(s) 355, 449, 526, 1022
Hpy188III TCNNGA 6 cut(s) 302, 536, 771, 874, 1031, 1317
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 1 cut(s) 844
HpyCH4III ACNGT 6 cut(s) 52, 106, 508, 619, 686, 697
HpyCH4IV ACGT 1 cut(s) 739
HpyCH4V TGCA 7 cut(s) 416, 551, 689, 806, 1038, 1146, 1302
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 1212
HpyF3I CTNAG 3 cut(s) 303, 1079, 1266
HpySE526I ACGT 1 cut(s) 739
Hsp92II CATG 5 cut(s) 293, 665, 823, 917, 1051
HspAI GCGC 1 cut(s) 1190
Kpn2I TCCGGA 1 cut(s) 873
KroI GCCGGC 1 cut(s) 1064
KroNI GCCGGC 1 cut(s) 1066
Kzo9I GATC 5 cut(s) 199, 253, 277, 718, 1027
LmnI GCTCC 4 cut(s) 232, 373, 949, 1254
Lsp1109I GCAGC 5 cut(s) 400, 571, 790, 1050, 1071
LweI GCATC 4 cut(s) 554, 1007, 1051, 1198
MaeI CTAG 3 cut(s) 1031, 1089, 1106
MaeII ACGT 1 cut(s) 739
MalI GATC 5 cut(s) 201, 255, 279, 720, 1029
MboI GATC 5 cut(s) 199, 253, 277, 718, 1027
MboII GAAGA 9 cut(s) 95, 137, 160, 163, 166, 368, 373, 977, 1037
MfeI CAATTG 1 cut(s) 1100
MflI RGATCY 1 cut(s) 1027
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 1 cut(s) 125
MroI TCCGGA 1 cut(s) 873
MroNI GCCGGC 1 cut(s) 1064
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 6 cut(s) 458, 518, 864, 1116, 1194, 1248
MslI CAYNNNNRTG 1 cut(s) 666
MspCI CTTAAG 1 cut(s) 1193
MspI CCGG 3 cut(s) 874, 1065, 1291
MspR9I CCNGG 3 cut(s) 431, 465, 1166
MunI CAATTG 1 cut(s) 1100
Mva1269I GAATGC 3 cut(s) 551, 701, 1139
MvaI CCWGG 3 cut(s) 431, 465, 1166
MwoI GCNNNNNNNGC 2 cut(s) 548, 1212
NaeI GCCGGC 1 cut(s) 1066
NdeI CATATG 1 cut(s) 829
NdeII GATC 5 cut(s) 199, 253, 277, 718, 1027
NgoMIV GCCGGC 1 cut(s) 1064
NheI GCTAGC 1 cut(s) 1105
NlaIII CATG 5 cut(s) 293, 665, 823, 917, 1051
NlaIV GGNNCC 1 cut(s) 596
PctI GAATGC 3 cut(s) 551, 701, 1139
PdiI GCCGGC 1 cut(s) 1066
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 56, 824
PkrI GCNGC 5 cut(s) 415, 586, 805, 1040, 1086
PleI GAGTC 1 cut(s) 775
PmaCI CACGTG 1 cut(s) 740
PmlI CACGTG 1 cut(s) 740
PpsI GAGTC 1 cut(s) 775
Ppu21I YACGTR 1 cut(s) 740
Psp6I CCWGG 3 cut(s) 429, 463, 1164
PspCI CACGTG 1 cut(s) 740
PspGI CCWGG 3 cut(s) 429, 463, 1164
PspN4I GGNNCC 1 cut(s) 596
PspPI GGNCC 2 cut(s) 594, 899
PstI CTGCAG 2 cut(s) 418, 1148
PsuI RGATCY 1 cut(s) 1027
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 6 cut(s) 458, 518, 864, 1116, 1194, 1248
SatI GCNGC 5 cut(s) 414, 585, 804, 1039, 1085
Sau3AI GATC 5 cut(s) 199, 253, 277, 718, 1027
Sau96I GGNCC 2 cut(s) 594, 899
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 3 cut(s) 431, 465, 1166
SetI ASST 9 cut(s) 415, 435, 742, 837, 855, 904, 1259, 1301, 1311
SfaNI GCATC 4 cut(s) 554, 1007, 1051, 1198
SfcI CTRYAG 3 cut(s) 51, 414, 1144
SinI GGWCC 2 cut(s) 594, 899
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 1193
SmoI CTYRAG 1 cut(s) 1193
SsiI CCGC 1 cut(s) 1162
SspI AATATT 1 cut(s) 28
SspMI CTAG 3 cut(s) 1031, 1089, 1106
StyD4I CCNGG 3 cut(s) 429, 463, 1164
StyI CCWWGG 1 cut(s) 1088
TaaI ACNGT 6 cut(s) 52, 106, 508, 619, 686, 697
TaiI ACGT 1 cut(s) 742
TaqI TCGA 1 cut(s) 409
TfiI GAWTC 2 cut(s) 56, 824
Tru1I TTAA 6 cut(s) 458, 518, 864, 1116, 1194, 1248
Tru9I TTAA 6 cut(s) 458, 518, 864, 1116, 1194, 1248
TscAI CASTG 1 cut(s) 1083
TseI GCWGC 5 cut(s) 413, 584, 803, 1038, 1084
TspDTI ATGAA 5 cut(s) 36, 138, 413, 656, 1064
TspGWI ACGGA 2 cut(s) 451, 500
TspRI CASTG 1 cut(s) 1083
Vha464I CTTAAG 1 cut(s) 1193
VpaK11BI GGWCC 2 cut(s) 594, 899
XapI RAATTY 4 cut(s) 312, 974, 1054, 1198
XbaI TCTAGA 1 cut(s) 1030
XcmI CCANNNNNNNNNTGG 2 cut(s) 914, 1183
XmaJI CCTAGG 1 cut(s) 1088
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 1031, 1089, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.