Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Reverse (-)

82323203 .. 82324229

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATGTTCCGTCCGGTGGCGCGTCGTTATGACGTCGCCGTCGGGCGGGCCTGTACGGCAGGTAGGTTCGCCGGAGGGTTTGGGCTGCGCGTAATGTTCGTCGAGCTGCGAAGTTCATCTCCGTGTACGGAAATACATCGAGGGATTTTAAAGCCCGGAATGCCGATGACCGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCCGAGAATGGTCCGGAAGCAGGCATTACATTCCCCACAGGATGCTCTTTGAATTGGGTTGTTGCTCATTGGACCCCAAATACGGGGGACAAGACGGTGCTTCGGTATGATGATGTGATGAAATTAGATTTTGGAACTCATGTTGATGGACATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGTGATCAATGGGTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

158

Amino Acids

17.39

Weight (kDa)

6.89

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	48 - 154	3.5e-11	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AatII	GACGTC	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	50
AccII	CGCG	2 cut(s)	22, 90
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	55, 127
AfiI	CCNNNNNNNGG	5 cut(s)	16, 45, 233, 295, 296
AgsI	TTSAA	3 cut(s)	265, 397, 422
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	85, 106
AspLEI	GCGC	2 cut(s)	22, 90
AspS9I	GGNCC	3 cut(s)	48, 224, 285
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	469
AvaII	GGWCC	2 cut(s)	224, 285
BbrPI	CACGTG	1 cut(s)	431
BbvI	GCAGC	2 cut(s)	72, 93
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	23, 72
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	50
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	86, 107
BlsI	GCNGC	2 cut(s)	87, 108
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	2 cut(s)	224, 285
BmgT120I	GGNCC	3 cut(s)	48, 224, 285
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	13, 226
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 45, 233, 295, 296
BseAI	TCCGGA	1 cut(s)	226
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	5 cut(s)	16, 45, 233, 295, 296
BseXI	GCAGC	2 cut(s)	72, 93
Bsh1236I	CGCG	2 cut(s)	22, 90
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	14, 72, 156, 227
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	5 cut(s)	16, 45, 233, 295, 296
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	2 cut(s)	165, 392
BsnI	GGCC	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	409, 459
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	50
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	22, 90
BspLI	GGNNCC	1 cut(s)	287
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	404
BssMI	GATC	2 cut(s)	409, 459
BssNI	GRCGYC	1 cut(s)	33
Bst4CI	ACNGT	4 cut(s)	199, 310, 377, 388
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	48, 235
BstF5I	GGATG	1 cut(s)	260
BstFNI	CGCG	2 cut(s)	22, 90
BstHHI	GCGC	2 cut(s)	22, 90
BstKTI	GATC	2 cut(s)	412, 462
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	409, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 160
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	2 cut(s)	22, 90
BstV1I	GCAGC	2 cut(s)	72, 93
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	48, 235
CfoI	GCGC	2 cut(s)	22, 90
Cfr13I	GGNCC	3 cut(s)	48, 224, 285
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	54, 126
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	5 cut(s)	50, 85, 106, 154, 425
CviKI_1	RGCY	5 cut(s)	50, 85, 106, 154, 425
CviQI	GTAC	2 cut(s)	54, 126
DpnI	GATC	2 cut(s)	411, 461
DpnII	GATC	2 cut(s)	409, 459
DraI	TTTAAA	1 cut(s)	150
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	224, 285
Eco72I	CACGTG	1 cut(s)	431
FaeI	CATG	1 cut(s)	356
FaiI	YATR	6 cut(s)	30, 321, 354, 366, 368, 404
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	352
FauI	CCCGC	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	86, 107
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	86, 107
GlaI	GCGC	2 cut(s)	21, 89
GluI	GCNGC	2 cut(s)	86, 107
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	4 cut(s)	14, 72, 156, 227
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	2 cut(s)	22, 90
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	2 cut(s)	20, 88
HinP1I	GCGC	2 cut(s)	20, 88
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HpaII	CCGG	4 cut(s)	14, 72, 156, 227
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	2 cut(s)	126, 373
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	2 cut(s)	126, 373
Hpy99I	CGWCG	4 cut(s)	27, 38, 44, 104
HpyCH4III	ACNGT	4 cut(s)	199, 310, 377, 388
HpyCH4IV	ACGT	2 cut(s)	33, 430
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 160
HpySE526I	ACGT	2 cut(s)	33, 430
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	2 cut(s)	20, 88
Kpn2I	TCCGGA	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	409, 459
LpnPI	CCDG	8 cut(s)	27, 45, 64, 85, 169, 219, 237, 240
Lsp1109I	GCAGC	2 cut(s)	72, 93
LweI	GCATC	1 cut(s)	245
MaeII	ACGT	2 cut(s)	33, 430
MalI	GATC	2 cut(s)	411, 461
MboI	GATC	2 cut(s)	409, 459
MluCI	AATT	2 cut(s)	265, 335
MnlI	CCTC	3 cut(s)	68, 134, 436
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	2 cut(s)	149, 209
MslI	CAYNNNNRTG	2 cut(s)	121, 357
MspI	CCGG	4 cut(s)	14, 72, 156, 227
MspR9I	CCNGG	1 cut(s)	156
Mva1269I	GAATGC	2 cut(s)	165, 392
MvnI	CGCG	2 cut(s)	22, 90
MwoI	GCNNNNNNNGC	2 cut(s)	56, 160
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	409, 459
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	287
PctI	GAATGC	2 cut(s)	165, 392
PkrI	GCNGC	2 cut(s)	87, 108
PmaCI	CACGTG	1 cut(s)	431
PmlI	CACGTG	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	431
PspCI	CACGTG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	3 cut(s)	48, 224, 285
RsaI	GTAC	2 cut(s)	55, 127
RsaNI	GTAC	2 cut(s)	54, 126
RseI	CAYNNNNRTG	2 cut(s)	121, 357
SaqAI	TTAA	2 cut(s)	149, 209
SatI	GCNGC	2 cut(s)	86, 107
Sau3AI	GATC	2 cut(s)	409, 459
Sau96I	GGNCC	3 cut(s)	48, 224, 285
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	6 cut(s)	36, 64, 68, 108, 433, 459
SfaNI	GCATC	1 cut(s)	245
SinI	GGWCC	2 cut(s)	224, 285
SmiMI	CAYNNNNRTG	2 cut(s)	121, 357
Sse9I	AATT	2 cut(s)	265, 335
SsiI	CCGC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	4 cut(s)	199, 310, 377, 388
TaiI	ACGT	2 cut(s)	36, 433
TaqI	TCGA	2 cut(s)	102, 139
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	2 cut(s)	265, 335
Tru1I	TTAA	2 cut(s)	149, 209
Tru9I	TTAA	2 cut(s)	149, 209
TseI	GCWGC	2 cut(s)	85, 106
TspDTI	ATGAA	2 cut(s)	105, 347
TspGWI	ACGGA	3 cut(s)	111, 143, 191
VpaK11BI	GGWCC	2 cut(s)	224, 285
ZraI	GACGTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.