Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Reverse (-)

11974846 .. 11980362

Gene Structure 5517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0073900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCGTTGGGTGTTTTTCTTTCCTACGAGTGTCCTTCTATTGTTTTTATGAAATCAGATTCTGGGTCATCCGATTCTCTGGATAGCTTATTTGGCGACAAAGATGCAAGCAGTGCTCTGGAAGTTTCTAGTATCATTCAACCAAAAGAGGCTGATTACCCATTTTGTTGCCTATCAGTTGAAGATGCTCCAATCAATGACTTGGTAGATTTTATCATTGCTTCTCAGATATCTGTGAAACTTGAGAATGAGCACAACTGCCATATCTATAGGGTGGTGTTGATGTCTGCAACTGCTGATATTGGAAGGTCACTTATTGTCAATTTTGCAACCGCTAACTGCTACAAAGTTGAGCATTTGAAAAGACCAGAAAACTGGGCATTAGTTGAGAAGGCCAAGTACATCTATGTTGCTGGTTTTTTCTCAACTGTATATCCAGAATCCATTCAGCTTGTTACTGAACATGTAGCTGCAAATAACAAGGTTTTCAGCATAACCTTTCTACCCCATTTATCTGTGAATTTTTCAAGGATGTCCAGGAGAAAGCTAGCTGTGCCAAAATGCATCTATCTTGCTCAAGAGAGTTACTACAAAGTAAGTTTCCTAGTTGAAGCTTTTGACATATTTTTGGAAGCTCAGAATACAAAGACTTATGTTGCAGTGGAGATATGTGGGCTGCTATTGATGGTGTATCAAAGGCTTCTCAAGTCCTCCTGTTGTGTAAATAGTTGGGCTGTGTTGGCCTTGCCTAGGGCCCTAGGTGCCCAGGGTGGCATCCCAAATGGGCCTCGCCATGGTGGGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

268

Amino Acids

29.65

Weight (kDa)

6.08

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	95 - 171	4.5e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	761
AciI	CCGC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	520
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	750, 794
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	5 cut(s)	140, 182, 361, 528, 611
AjnI	CCWGG	2 cut(s)	536, 765
AluBI	AGCT	7 cut(s)	87, 451, 470, 547, 551, 614, 635
AluI	AGCT	7 cut(s)	87, 451, 470, 547, 551, 614, 635
Alw21I	GWGCWC	2 cut(s)	118, 255
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	4 cut(s)	393, 741, 753, 785
ApaI	GGGCCC	1 cut(s)	757
ApeKI	GCWGC	2 cut(s)	470, 676
ApoI	RAATTY	1 cut(s)	520
Asp700I	GAANNNNTTC	1 cut(s)	444
AspA2I	CCTAGG	2 cut(s)	749, 757
AspS9I	GGNCC	3 cut(s)	753, 754, 785
AsuNHI	GCTAGC	1 cut(s)	547
AvrII	CCTAGG	2 cut(s)	749, 757
BaeGI	GKGCMC	2 cut(s)	757, 766
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	757
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
Bbv12I	GWGCWC	2 cut(s)	118, 255
BbvI	GCAGC	2 cut(s)	457, 663
BccI	CCATC	1 cut(s)	679
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	538, 767
BfaI	CTAG	5 cut(s)	129, 548, 605, 750, 758
BfmI	CTRYAG	1 cut(s)	268
BisI	GCNGC	2 cut(s)	471, 677
BlnI	CCTAGG	2 cut(s)	749, 757
BlsI	GCNGC	2 cut(s)	472, 678
Bme1390I	CCNGG	2 cut(s)	538, 767
BmgT120I	GGNCC	3 cut(s)	753, 754, 785
BmiI	GGNNCC	2 cut(s)	755, 763
BmrFI	CCNGG	2 cut(s)	538, 767
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	4 cut(s)	94, 175, 573, 783
BmtI	GCTAGC	1 cut(s)	551
BmuI	ACTGGG	1 cut(s)	385
BpuEI	CTTGAG	3 cut(s)	263, 561, 689
BsaJI	CCNNGG	5 cut(s)	749, 757, 765, 766, 793
Bsc4I	CCNNNNNNNGG	2 cut(s)	750, 794
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	538, 767
BseDI	CCNNGG	5 cut(s)	749, 757, 765, 766, 793
BseGI	GGATG	3 cut(s)	68, 537, 774
BseLI	CCNNNNNNNGG	2 cut(s)	750, 794
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	239, 650
BseNI	ACTGG	1 cut(s)	380
BseSI	GKGCMC	2 cut(s)	757, 766
BseXI	GCAGC	2 cut(s)	457, 663
BshFI	GGCC	4 cut(s)	395, 743, 755, 787
BshNI	GGYRCC	1 cut(s)	761
BsiHKAI	GWGCWC	2 cut(s)	118, 255
BslI	CCNNNNNNNGG	2 cut(s)	750, 794
BsnI	GGCC	4 cut(s)	395, 743, 755, 787
Bsp120I	GGGCCC	1 cut(s)	753
Bsp1286I	GDGCHC	4 cut(s)	118, 255, 757, 766
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	4 cut(s)	395, 743, 755, 787
BspCNI	CTCAG	2 cut(s)	238, 649
BspLI	GGNNCC	2 cut(s)	755, 763
BspOI	GCTAGC	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	5 cut(s)	749, 757, 765, 766, 793
BssT1I	CCWWGG	3 cut(s)	749, 757, 793
Bst2UI	CCWGG	2 cut(s)	538, 767
Bst4CI	ACNGT	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	109, 549
BstDEI	CTNAG	2 cut(s)	225, 636
BstDSI	CCRYGG	1 cut(s)	793
BstENI	CCTNNNNNAGG	1 cut(s)	748
BstF5I	GGATG	3 cut(s)	68, 537, 774
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 113, 553, 740, 761
BstNI	CCWGG	2 cut(s)	538, 767
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	536, 765
BstSFI	CTRYAG	1 cut(s)	268
BstSLI	GKGCMC	2 cut(s)	757, 766
BstV1I	GCAGC	2 cut(s)	457, 663
BstXI	CCANNNNNNTGG	1 cut(s)	375
BsuRI	GGCC	4 cut(s)	395, 743, 755, 787
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	3 cut(s)	68, 537, 774
BtsI	GCAGTG	2 cut(s)	118, 666
BtsIMutI	CAGTG	2 cut(s)	118, 666
Cac8I	GCNNGC	2 cut(s)	109, 549
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	3 cut(s)	753, 754, 785
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	2 cut(s)	464, 794
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	2 cut(s)	225, 636
Eco130I	CCWWGG	3 cut(s)	749, 757, 793
Eco24I	GRGCYC	1 cut(s)	757
Eco32I	GATATC	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	748
EcoO109I	RGGNCCY	2 cut(s)	753, 754
EcoRII	CCWGG	2 cut(s)	536, 765
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	3 cut(s)	749, 757, 793
EcoT22I	ATGCAT	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	3 cut(s)	749, 757, 793
FaeI	CATG	2 cut(s)	467, 797
FatI	CATG	2 cut(s)	463, 793
Fnu4HI	GCNGC	2 cut(s)	471, 677
FokI	GGATG	3 cut(s)	55, 544, 761
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	2 cut(s)	471, 677
FspBI	CTAG	5 cut(s)	129, 548, 605, 750, 758
GluI	GCNGC	2 cut(s)	471, 677
HaeIII	GGCC	4 cut(s)	395, 743, 755, 787
Hin1II	CATG	2 cut(s)	467, 797
HindIII	AAGCTT	1 cut(s)	612
HinfI	GANTC	3 cut(s)	59, 74, 440
Hpy188I	TCNGA	4 cut(s)	58, 73, 228, 639
Hpy188III	TCNNGA	5 cut(s)	80, 119, 437, 578, 804
HpyAV	CCTTC	3 cut(s)	45, 300, 385
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	6 cut(s)	107, 290, 329, 473, 564, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 113, 553, 740, 761
HpyF3I	CTNAG	2 cut(s)	225, 636
Hsp92II	CATG	2 cut(s)	467, 797
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	2 cut(s)	457, 663
LweI	GCATC	4 cut(s)	94, 175, 573, 783
MaeI	CTAG	5 cut(s)	129, 548, 605, 750, 758
MaeIII	GTNAC	3 cut(s)	309, 454, 584
MboII	GAAGA	1 cut(s)	194
MhlI	GDGCHC	4 cut(s)	118, 255, 757, 766
MluCI	AATT	2 cut(s)	322, 520
MnlI	CCTC	3 cut(s)	142, 721, 798
Mph1103I	ATGCAT	1 cut(s)	566
MroXI	GAANNNNTTC	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	538, 767
MvaI	CCWGG	2 cut(s)	538, 767
MwoI	GCNNNNNNNGC	5 cut(s)	93, 113, 553, 740, 761
NcoI	CCATGG	1 cut(s)	793
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	2 cut(s)	467, 797
NlaIV	GGNNCC	2 cut(s)	755, 763
NmuCI	GTSAC	1 cut(s)	309
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	1 cut(s)	467
PasI	CCCWGGG	1 cut(s)	766
PciI	ACATGT	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	59, 74, 440
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	472, 678
PscI	ACATGT	1 cut(s)	463
Psp6I	CCWGG	2 cut(s)	536, 765
PspGI	CCWGG	2 cut(s)	536, 765
PspN4I	GGNNCC	2 cut(s)	755, 763
PspOMI	GGGCCC	1 cut(s)	753
PspPI	GGNCC	3 cut(s)	753, 754, 785
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SatI	GCNGC	2 cut(s)	471, 677
Sau96I	GGNCC	3 cut(s)	753, 754, 785
ScrFI	CCNGG	2 cut(s)	538, 767
SduI	GDGCHC	4 cut(s)	118, 255, 757, 766
SfaNI	GCATC	4 cut(s)	94, 175, 573, 783
SfcI	CTRYAG	1 cut(s)	268
SmlI	CTYRAG	3 cut(s)	242, 576, 704
SmoI	CTYRAG	3 cut(s)	242, 576, 704
Sse9I	AATT	2 cut(s)	322, 520
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	5 cut(s)	129, 548, 605, 750, 758
StyD4I	CCNGG	2 cut(s)	536, 765
StyI	CCWWGG	3 cut(s)	749, 757, 793
TaaI	ACNGT	1 cut(s)	430
TasI	AATT	2 cut(s)	322, 520
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	59, 74, 440
TscAI	CASTG	2 cut(s)	118, 666
TseFI	GTSAC	1 cut(s)	309
TseI	GCWGC	2 cut(s)	470, 676
Tsp45I	GTSAC	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	118, 666
XagI	CCTNNNNNAGG	1 cut(s)	748
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	467
XmaJI	CCTAGG	2 cut(s)	749, 757
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	5 cut(s)	129, 548, 605, 750, 758
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.