Rh1BG073500

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
11310874 .. 11317468
6595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG073500.1

Sequence Viewer

Length: 1404 bp
ATGGCAGGGGAGAACTTGGATGAAAATATTCCTTGCGAGGAAAATGGGACTGTAGAATCTTCGAATGGCAATGGTAATGGAGAAGCTGCTCAACAATCTCCAACTGTTCAGAAAGATGAGGATGAAGACAAAGGAGTCTGGTTCCACCGTACAATCTTCCCTGCCATTAGAAGAGAAAATAAAGTGTACAAATCTTGGATTGTAGGATTGATGAAAAAGAAAGCACAGGCAGAGCATACTGATCCACAATCTTTAAGTGGGCAAACTGATCCACAATCTACAAGTAGGCAAACTGCTCCACAATCTACAAGTAGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGAGGGAGAAATTCAACAATACAGAGATGACAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCCGAGAATGGTCTGGAAGCTGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTGGATTTTGGAACTCATGTTGATGGTCATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTGAAAGGAGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTTGCGATTGAAACTTTCGCATCAACTGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCGTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCGTTGTCCAGCCCTATCCTCCTCTCTGTGATGTTAAAGGGAGCTATGTATCTCAGTTTGAGCATACAATTTTACTCCGGCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Protein Analysis

467

Amino Acids

52.44

Weight (kDa)

5.51

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 158 - 361 1.9e-27 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 1376
AccIII TCCGGA 1 cut(s) 942
AciI CCGC 1 cut(s) 1231
AclWI GGATC 4 cut(s) 236, 263, 317, 782
AcoI YGGCCR 2 cut(s) 1135, 1361
AcsI RAATTY 4 cut(s) 381, 1043, 1123, 1267
AcuI CTGAAG 2 cut(s) 444, 677
AcvI CACGTG 1 cut(s) 809
AfaI GTAC 3 cut(s) 151, 188, 504
AfiI CCNNNNNNNGG 3 cut(s) 361, 674, 1237
AflII CTTAAG 1 cut(s) 1262
AgsI TTSAA 8 cut(s) 386, 452, 643, 775, 800, 908, 952, 1058
AjnI CCWGG 3 cut(s) 498, 532, 1233
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AloI GAACNNNNNNTCC 2 cut(s) 981, 1013
AluBI AGCT 4 cut(s) 86, 482, 611, 1326
AluI AGCT 4 cut(s) 86, 482, 611, 1326
Alw26I GTCTC 2 cut(s) 554, 1235
AlwI GGATC 4 cut(s) 236, 263, 317, 782
Aor13HI TCCGGA 1 cut(s) 942
AoxI GGCC 2 cut(s) 1135, 1361
ApeKI GCWGC 6 cut(s) 86, 482, 653, 872, 1107, 1153
ApoI RAATTY 4 cut(s) 381, 1043, 1123, 1267
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 1157
AspLEI GCGC 2 cut(s) 447, 1261
AspS9I GGNCC 2 cut(s) 663, 968
AsuHPI GGTGA 1 cut(s) 1052
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 1174
AvaII GGWCC 2 cut(s) 663, 968
AvrII CCTAGG 1 cut(s) 1157
AxyI CCTNAGG 1 cut(s) 372
BbrPI CACGTG 1 cut(s) 809
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 6 cut(s) 73, 469, 640, 859, 1119, 1140
BccI CCATC 2 cut(s) 337, 731
BciT130I CCWGG 3 cut(s) 500, 534, 1235
BciVI GTATCC 1 cut(s) 950
BcoDI GTCTC 2 cut(s) 554, 1235
BfaI CTAG 3 cut(s) 1100, 1158, 1175
BfmI CTRYAG 3 cut(s) 51, 483, 1213
BfoI RGCGCY 2 cut(s) 448, 1262
BfrI CTTAAG 1 cut(s) 1262
BfuAI ACCTGC 1 cut(s) 1376
BfuI GTATCC 1 cut(s) 950
BglII AGATCT 1 cut(s) 1096
BisI GCNGC 6 cut(s) 87, 483, 654, 873, 1108, 1154
BlnI CCTAGG 1 cut(s) 1157
BlsI GCNGC 6 cut(s) 88, 484, 655, 874, 1109, 1155
Bme1390I CCNGG 3 cut(s) 500, 534, 1235
Bme18I GGWCC 2 cut(s) 663, 968
BmgT120I GGNCC 2 cut(s) 663, 968
BmiI GGNNCC 2 cut(s) 143, 665
BmrFI CCNGG 3 cut(s) 500, 534, 1235
BmrI ACTGGG 1 cut(s) 1083
BmsI GCATC 4 cut(s) 623, 1076, 1120, 1267
BmtI GCTAGC 1 cut(s) 1178
BmuI ACTGGG 1 cut(s) 1083
BpiI GAAGAC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 809
BsaI GGTCTC 1 cut(s) 1235
BsaJI CCNNGG 2 cut(s) 1157, 1234
BsaWI WCCGGW 1 cut(s) 942
BsaXI ACNNNNNCTCC 2 cut(s) 1232, 1262
Bsc4I CCNNNNNNNGG 3 cut(s) 361, 674, 1237
Bse118I RCCGGY 1 cut(s) 1133
Bse1I ACTGG 1 cut(s) 1078
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 2 cut(s) 76, 615
BseAI TCCGGA 1 cut(s) 942
BseBI CCWGG 3 cut(s) 500, 534, 1235
BseDI CCNNGG 2 cut(s) 1157, 1234
BseGI GGATG 5 cut(s) 25, 127, 329, 638, 1140
BseLI CCNNNNNNNGG 3 cut(s) 361, 674, 1237
BseMI GCAATG 2 cut(s) 76, 615
BseMII CTCAG 3 cut(s) 363, 1139, 1349
BseNI ACTGG 1 cut(s) 1078
BseRI GAGGAG 1 cut(s) 1293
BseXI GCAGC 6 cut(s) 73, 469, 640, 859, 1119, 1140
BsgI GTGCAG 1 cut(s) 1126
BshFI GGCC 2 cut(s) 1137, 1363
BsiSI CCGG 3 cut(s) 943, 1134, 1360
BslFI GGGAC 2 cut(s) 61, 692
BslI CCNNNNNNNGG 3 cut(s) 361, 674, 1237
BsmAI GTCTC 2 cut(s) 554, 1235
BsmFI GGGAC 2 cut(s) 61, 692
BsmI GAATGC 2 cut(s) 620, 770
BsnI GGCC 2 cut(s) 1137, 1363
Bso31I GGTCTC 1 cut(s) 1235
Bsp119I TTCGAA 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 942
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 6 cut(s) 241, 268, 322, 346, 787, 1096
BspACI CCGC 1 cut(s) 1231
BspANI GGCC 2 cut(s) 1137, 1363
BspCNI CTCAG 3 cut(s) 364, 1140, 1348
BspEI TCCGGA 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 143, 665
BspMAI CTGCAG 2 cut(s) 487, 1217
BspMI ACCTGC 1 cut(s) 1376
BspOI GCTAGC 1 cut(s) 1178
BspPI GGATC 4 cut(s) 236, 263, 317, 782
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 1262
BspTNI GGTCTC 1 cut(s) 1235
BsrDI GCAATG 2 cut(s) 76, 615
BsrFI RCCGGY 1 cut(s) 1133
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 1 cut(s) 1078
BssAI RCCGGY 1 cut(s) 1133
BssECI CCNNGG 2 cut(s) 1157, 1234
BssMI GATC 6 cut(s) 241, 268, 322, 346, 787, 1096
BssT1I CCWWGG 1 cut(s) 1157
Bst2UI CCWGG 3 cut(s) 500, 534, 1235
Bst4CI ACNGT 7 cut(s) 52, 106, 149, 577, 688, 755, 766
Bst6I CTCTTC 4 cut(s) 166, 420, 425, 1029
BstAFI CTTAAG 1 cut(s) 1262
BstAUI TGTACA 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 809
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 5 cut(s) 613, 1135, 1176, 1217, 1282
BstDEI CTNAG 3 cut(s) 372, 1148, 1335
BstF5I GGATG 5 cut(s) 25, 127, 329, 638, 1140
BstH2I RGCGCY 2 cut(s) 448, 1262
BstHHI GCGC 2 cut(s) 447, 1261
BstKTI GATC 6 cut(s) 244, 271, 325, 349, 790, 1099
BstMAI GTCTC 2 cut(s) 554, 1235
BstMBI GATC 6 cut(s) 241, 268, 322, 346, 787, 1096
BstMWI GCNNNNNNNGC 2 cut(s) 617, 1281
BstNI CCWGG 3 cut(s) 500, 534, 1235
BstSCI CCNGG 3 cut(s) 498, 532, 1233
BstSFI CTRYAG 3 cut(s) 51, 483, 1213
BstV1I GCAGC 6 cut(s) 73, 469, 640, 859, 1119, 1140
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 1096
BstYI RGATCY 1 cut(s) 1096
Bsu36I CCTNAGG 1 cut(s) 372
BsuI GTATCC 1 cut(s) 950
BsuRI GGCC 2 cut(s) 1137, 1363
BtgZI GCGATG 2 cut(s) 479, 1290
BtsCI GGATG 5 cut(s) 25, 127, 329, 638, 1140
BtsIMutI CAGTG 1 cut(s) 1145
BveI ACCTGC 1 cut(s) 1376
Cac8I GCNNGC 5 cut(s) 613, 1135, 1176, 1217, 1282
CfoI GCGC 2 cut(s) 447, 1261
Cfr10I RCCGGY 1 cut(s) 1133
Cfr13I GGNCC 2 cut(s) 663, 968
CseI GACGC 1 cut(s) 842
Csp6I GTAC 3 cut(s) 150, 187, 503
CviAII CATG 5 cut(s) 359, 731, 889, 983, 1117
CviQI GTAC 3 cut(s) 150, 187, 503
DdeI CTNAG 3 cut(s) 372, 1148, 1335
DpnI GATC 6 cut(s) 243, 270, 324, 348, 789, 1098
DpnII GATC 6 cut(s) 241, 268, 322, 346, 787, 1096
DraI TTTAAA 1 cut(s) 528
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 1135, 1361
Eam1104I CTCTTC 4 cut(s) 166, 420, 425, 1029
EarI CTCTTC 4 cut(s) 166, 420, 425, 1029
Eco130I CCWWGG 1 cut(s) 1157
Eco31I GGTCTC 1 cut(s) 1235
Eco47I GGWCC 2 cut(s) 663, 968
Eco57I CTGAAG 2 cut(s) 444, 677
Eco72I CACGTG 1 cut(s) 809
Eco81I CCTNAGG 1 cut(s) 372
EcoRII CCWGG 3 cut(s) 498, 532, 1233
EcoT14I CCWWGG 1 cut(s) 1157
ErhI CCWWGG 1 cut(s) 1157
FaeI CATG 5 cut(s) 362, 734, 892, 986, 1120
FaqI GGGAC 2 cut(s) 61, 692
FatI CATG 5 cut(s) 358, 730, 888, 982, 1116
FauNDI CATATG 1 cut(s) 898
Fnu4HI GCNGC 6 cut(s) 87, 483, 654, 873, 1108, 1154
FokI GGATG 5 cut(s) 32, 134, 316, 645, 1127
Fsp4HI GCNGC 6 cut(s) 87, 483, 654, 873, 1108, 1154
FspBI CTAG 3 cut(s) 1100, 1158, 1175
GlaI GCGC 2 cut(s) 446, 1260
GluI GCNGC 6 cut(s) 87, 483, 654, 873, 1108, 1154
HaeII RGCGCY 2 cut(s) 448, 1262
HaeIII GGCC 2 cut(s) 1137, 1363
HapII CCGG 3 cut(s) 943, 1134, 1360
HgaI GACGC 1 cut(s) 842
HhaI GCGC 2 cut(s) 447, 1261
Hin1II CATG 5 cut(s) 362, 734, 892, 986, 1120
Hin6I GCGC 2 cut(s) 445, 1259
HinP1I GCGC 2 cut(s) 445, 1259
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 4 cut(s) 56, 135, 836, 893
HpaII CCGG 3 cut(s) 943, 1134, 1360
HphI GGTGA 1 cut(s) 1052
Hpy166II GTNNAC 2 cut(s) 187, 751
Hpy188I TCNGA 5 cut(s) 111, 424, 518, 595, 1091
Hpy188III TCNNGA 6 cut(s) 371, 605, 840, 943, 1100, 1386
Hpy8I GTNNAC 2 cut(s) 187, 751
Hpy99I CGWCG 1 cut(s) 480
HpyAV CCTTC 1 cut(s) 913
HpyCH4III ACNGT 7 cut(s) 52, 106, 149, 577, 688, 755, 766
HpyCH4IV ACGT 1 cut(s) 808
HpyCH4V TGCA 7 cut(s) 485, 620, 758, 875, 1107, 1215, 1371
HpyF10VI GCNNNNNNNGC 2 cut(s) 617, 1281
HpyF3I CTNAG 3 cut(s) 372, 1148, 1335
HpySE526I ACGT 1 cut(s) 808
Hsp92II CATG 5 cut(s) 362, 734, 892, 986, 1120
HspAI GCGC 2 cut(s) 445, 1259
Kpn2I TCCGGA 1 cut(s) 942
KroI GCCGGC 1 cut(s) 1133
KroNI GCCGGC 1 cut(s) 1135
Kzo9I GATC 6 cut(s) 241, 268, 322, 346, 787, 1096
LmnI GCTCC 4 cut(s) 301, 442, 1018, 1323
Lsp1109I GCAGC 6 cut(s) 73, 469, 640, 859, 1119, 1140
LweI GCATC 4 cut(s) 623, 1076, 1120, 1267
MaeI CTAG 3 cut(s) 1100, 1158, 1175
MaeII ACGT 1 cut(s) 808
MalI GATC 6 cut(s) 243, 270, 324, 348, 789, 1098
MboI GATC 6 cut(s) 241, 268, 322, 346, 787, 1096
MboII GAAGA 8 cut(s) 51, 137, 148, 183, 437, 442, 1046, 1106
MfeI CAATTG 1 cut(s) 1169
MflI RGATCY 1 cut(s) 1096
MlyI GAGTC 2 cut(s) 144, 845
MmeI TCCRAC 2 cut(s) 125, 420
MroI TCCGGA 1 cut(s) 942
MroNI GCCGGC 1 cut(s) 1133
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 7 cut(s) 254, 527, 587, 933, 1185, 1263, 1317
MslI CAYNNNNRTG 1 cut(s) 735
MspCI CTTAAG 1 cut(s) 1262
MspI CCGG 3 cut(s) 943, 1134, 1360
MspR9I CCNGG 3 cut(s) 500, 534, 1235
MunI CAATTG 1 cut(s) 1169
Mva1269I GAATGC 2 cut(s) 620, 770
MvaI CCWGG 3 cut(s) 500, 534, 1235
MwoI GCNNNNNNNGC 2 cut(s) 617, 1281
NaeI GCCGGC 1 cut(s) 1135
NdeI CATATG 1 cut(s) 898
NdeII GATC 6 cut(s) 241, 268, 322, 346, 787, 1096
NgoMIV GCCGGC 1 cut(s) 1133
NheI GCTAGC 1 cut(s) 1174
NlaIII CATG 5 cut(s) 362, 734, 892, 986, 1120
NlaIV GGNNCC 2 cut(s) 143, 665
NspV TTCGAA 1 cut(s) 62
PctI GAATGC 2 cut(s) 620, 770
PdiI GCCGGC 1 cut(s) 1135
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 56, 893
PkrI GCNGC 6 cut(s) 88, 484, 655, 874, 1109, 1155
PleI GAGTC 2 cut(s) 143, 844
PmaCI CACGTG 1 cut(s) 809
PmlI CACGTG 1 cut(s) 809
PpsI GAGTC 2 cut(s) 143, 844
Ppu21I YACGTR 1 cut(s) 809
Psp6I CCWGG 3 cut(s) 498, 532, 1233
PspCI CACGTG 1 cut(s) 809
PspGI CCWGG 3 cut(s) 498, 532, 1233
PspN4I GGNNCC 2 cut(s) 143, 665
PspPI GGNCC 2 cut(s) 663, 968
PstI CTGCAG 2 cut(s) 487, 1217
PsuI RGATCY 1 cut(s) 1096
RsaI GTAC 3 cut(s) 151, 188, 504
RsaNI GTAC 3 cut(s) 150, 187, 503
RseI CAYNNNNRTG 1 cut(s) 735
SaqAI TTAA 7 cut(s) 254, 527, 587, 933, 1185, 1263, 1317
SatI GCNGC 6 cut(s) 87, 483, 654, 873, 1108, 1154
Sau3AI GATC 6 cut(s) 241, 268, 322, 346, 787, 1096
Sau96I GGNCC 2 cut(s) 663, 968
SchI GAGTC 2 cut(s) 144, 845
ScrFI CCNGG 3 cut(s) 500, 534, 1235
SfaNI GCATC 4 cut(s) 623, 1076, 1120, 1267
SfcI CTRYAG 3 cut(s) 51, 483, 1213
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 2 cut(s) 663, 968
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 1 cut(s) 1262
SmoI CTYRAG 1 cut(s) 1262
SsiI CCGC 1 cut(s) 1231
SspI AATATT 1 cut(s) 28
SspMI CTAG 3 cut(s) 1100, 1158, 1175
StyD4I CCNGG 3 cut(s) 498, 532, 1233
StyI CCWWGG 1 cut(s) 1157
TaaI ACNGT 7 cut(s) 52, 106, 149, 577, 688, 755, 766
TaiI ACGT 1 cut(s) 811
TaqI TCGA 2 cut(s) 62, 478
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 56, 893
Tru1I TTAA 7 cut(s) 254, 527, 587, 933, 1185, 1263, 1317
Tru9I TTAA 7 cut(s) 254, 527, 587, 933, 1185, 1263, 1317
TscAI CASTG 1 cut(s) 1152
TseI GCWGC 6 cut(s) 86, 482, 653, 872, 1107, 1153
TspDTI ATGAA 6 cut(s) 36, 138, 227, 482, 725, 1133
TspGWI ACGGA 2 cut(s) 520, 569
TspRI CASTG 1 cut(s) 1152
Vha464I CTTAAG 1 cut(s) 1262
VpaK11BI GGWCC 2 cut(s) 663, 968
XapI RAATTY 4 cut(s) 381, 1043, 1123, 1267
XbaI TCTAGA 1 cut(s) 1099
XcmI CCANNNNNNNNNTGG 2 cut(s) 983, 1252
XmaJI CCTAGG 1 cut(s) 1157
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 1100, 1158, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.