Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Forward (+)

17383056 .. 17389795

Gene Structure 6740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55756

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCAAAAACAGGAAAACTATGTTTTAAATTATAAGGTTTTCAGAACTCATCACATCTTCCACTCAGTCACAGATGTTTCAAAAAAGAAGAAGAAGAAAAATAAGAGCAAGAAAAAGAAAGCACAGGCAGAGCATACTGATCCACAATCTTTAAATGGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGAGGGCGAAATTCAACAATATAGAGATGACAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATTGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCTGAGAATGGTCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTAGATTTTGGAATCCATGTTGATGGGCAAGGCATCATCGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTGAAAGGAGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTTGCGATTGAAACTTTCGCATCAACCGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCGTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCATTGTCCAGCCTCTTCCTCCTCTGTGTGATGTTAAAGGGAGCTATGTATCTCAGTTTGAGCATACAATTTTACTCCGGCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

399

Amino Acids

45.19

Weight (kDa)

8.23

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	106 - 195	5.7e-08	Metallopeptidase family M24
Peptidase_M24	PF00557	200 - 293	2.2e-08	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
Acc36I	ACCTGC	1 cut(s)	1172
AccIII	TCCGGA	1 cut(s)	738
AciI	CCGC	1 cut(s)	1027
AclWI	GGATC	2 cut(s)	134, 161
AcoI	YGGCCR	2 cut(s)	931, 1157
AcsI	RAATTY	4 cut(s)	225, 839, 919, 1063
AcuI	CTGAAG	2 cut(s)	288, 521
AcvI	CACGTG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	3 cut(s)	205, 518, 1033
AflII	CTTAAG	1 cut(s)	1058
AgsI	TTSAA	7 cut(s)	81, 230, 296, 487, 704, 748, 854
AjnI	CCWGG	3 cut(s)	342, 376, 1029
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	2 cut(s)	326, 1122
AluI	AGCT	2 cut(s)	326, 1122
Alw26I	GTCTC	2 cut(s)	398, 1031
AlwI	GGATC	2 cut(s)	134, 161
Aor13HI	TCCGGA	1 cut(s)	738
AoxI	GGCC	2 cut(s)	931, 1157
ApeKI	GCWGC	5 cut(s)	326, 497, 668, 903, 949
ApoI	RAATTY	4 cut(s)	225, 839, 919, 1063
AspA2I	CCTAGG	1 cut(s)	953
AspLEI	GCGC	2 cut(s)	291, 1057
AspS9I	GGNCC	2 cut(s)	507, 764
AsuC2I	CCSGG	1 cut(s)	871
AsuHPI	GGTGA	1 cut(s)	848
AsuNHI	GCTAGC	1 cut(s)	970
AvaII	GGWCC	2 cut(s)	507, 764
AvrII	CCTAGG	1 cut(s)	953
AxyI	CCTNAGG	1 cut(s)	216
BbrPI	CACGTG	1 cut(s)	605
BbvI	GCAGC	5 cut(s)	313, 484, 655, 915, 936
BccI	CCATC	2 cut(s)	181, 575
BciT130I	CCWGG	3 cut(s)	344, 378, 1031
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	1 cut(s)	871
BcoDI	GTCTC	2 cut(s)	398, 1031
BfaI	CTAG	3 cut(s)	896, 954, 971
BfmI	CTRYAG	2 cut(s)	327, 1009
BfoI	RGCGCY	2 cut(s)	292, 1058
BfrI	CTTAAG	1 cut(s)	1058
BfuAI	ACCTGC	1 cut(s)	1172
BfuI	GTATCC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	892
BisI	GCNGC	5 cut(s)	327, 498, 669, 904, 950
BlnI	CCTAGG	1 cut(s)	953
BlsI	GCNGC	5 cut(s)	328, 499, 670, 905, 951
Bme1390I	CCNGG	4 cut(s)	344, 378, 871, 1031
Bme18I	GGWCC	2 cut(s)	507, 764
BmgT120I	GGNCC	2 cut(s)	507, 764
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	4 cut(s)	344, 378, 871, 1031
BmsI	GCATC	5 cut(s)	467, 600, 872, 916, 1063
BmtI	GCTAGC	1 cut(s)	974
BpuMI	CCSGG	1 cut(s)	871
BsaAI	YACGTR	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	1031
BsaJI	CCNNGG	2 cut(s)	953, 1030
BsaWI	WCCGGW	1 cut(s)	738
BsaXI	ACNNNNNCTCC	2 cut(s)	1028, 1058
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 518, 1033
Bse118I	RCCGGY	1 cut(s)	929
Bse21I	CCTNAGG	1 cut(s)	216
Bse3DI	GCAATG	2 cut(s)	337, 459
BseAI	TCCGGA	1 cut(s)	738
BseBI	CCWGG	3 cut(s)	344, 378, 1031
BseDI	CCNNGG	2 cut(s)	953, 1030
BseGI	GGATG	3 cut(s)	173, 482, 936
BseLI	CCNNNNNNNGG	3 cut(s)	205, 518, 1033
BseMI	GCAATG	2 cut(s)	337, 459
BseMII	CTCAG	5 cut(s)	78, 207, 429, 935, 1145
BseRI	GAGGAG	1 cut(s)	1089
BseXI	GCAGC	5 cut(s)	313, 484, 655, 915, 936
BsgI	GTGCAG	1 cut(s)	922
BshFI	GGCC	2 cut(s)	933, 1159
BsiSI	CCGG	4 cut(s)	739, 870, 930, 1156
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	3 cut(s)	205, 518, 1033
BsmAI	GTCTC	2 cut(s)	398, 1031
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	933, 1159
Bso31I	GGTCTC	1 cut(s)	1031
Bsp13I	TCCGGA	1 cut(s)	738
Bsp143I	GATC	4 cut(s)	139, 166, 190, 892
BspACI	CCGC	1 cut(s)	1027
BspANI	GGCC	2 cut(s)	933, 1159
BspCNI	CTCAG	5 cut(s)	77, 208, 430, 936, 1144
BspEI	TCCGGA	1 cut(s)	738
BspLI	GGNNCC	1 cut(s)	509
BspMAI	CTGCAG	2 cut(s)	331, 1013
BspMI	ACCTGC	1 cut(s)	1172
BspOI	GCTAGC	1 cut(s)	974
BspPI	GGATC	2 cut(s)	134, 161
BspTI	CTTAAG	1 cut(s)	1058
BspTNI	GGTCTC	1 cut(s)	1031
BsrDI	GCAATG	2 cut(s)	337, 459
BsrFI	RCCGGY	1 cut(s)	929
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	2 cut(s)	953, 1030
BssMI	GATC	4 cut(s)	139, 166, 190, 892
BssT1I	CCWWGG	1 cut(s)	953
Bst2UI	CCWGG	3 cut(s)	344, 378, 1031
Bst4CI	ACNGT	2 cut(s)	421, 532
Bst6I	CTCTTC	4 cut(s)	264, 269, 825, 1098
BstAFI	CTTAAG	1 cut(s)	1058
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	605
BstC8I	GCNNGC	5 cut(s)	457, 931, 972, 1013, 1078
BstDEI	CTNAG	5 cut(s)	64, 216, 438, 944, 1131
BstF5I	GGATG	3 cut(s)	173, 482, 936
BstH2I	RGCGCY	2 cut(s)	292, 1058
BstHHI	GCGC	2 cut(s)	291, 1057
BstKTI	GATC	4 cut(s)	142, 169, 193, 895
BstMAI	GTCTC	2 cut(s)	398, 1031
BstMBI	GATC	4 cut(s)	139, 166, 190, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 1077
BstNI	CCWGG	3 cut(s)	344, 378, 1031
BstSCI	CCNGG	4 cut(s)	342, 376, 869, 1029
BstSFI	CTRYAG	2 cut(s)	327, 1009
BstV1I	GCAGC	5 cut(s)	313, 484, 655, 915, 936
BstX2I	RGATCY	1 cut(s)	892
BstXI	CCANNNNNNTGG	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	892
Bsu36I	CCTNAGG	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	2 cut(s)	933, 1159
BtgZI	GCGATG	2 cut(s)	580, 1086
BtsCI	GGATG	3 cut(s)	173, 482, 936
BtsIMutI	CAGTG	1 cut(s)	941
BveI	ACCTGC	1 cut(s)	1172
Cac8I	GCNNGC	5 cut(s)	457, 931, 972, 1013, 1078
CfoI	GCGC	2 cut(s)	291, 1057
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	2 cut(s)	507, 764
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	5 cut(s)	203, 575, 685, 779, 913
CviJI	RGCY	8 cut(s)	326, 376, 906, 933, 949, 1090, 1122, 1159
CviKI_1	RGCY	8 cut(s)	326, 376, 906, 933, 949, 1090, 1122, 1159
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	5 cut(s)	64, 216, 438, 944, 1131
DpnI	GATC	4 cut(s)	141, 168, 192, 894
DpnII	GATC	4 cut(s)	139, 166, 190, 892
DraI	TTTAAA	3 cut(s)	27, 153, 372
EaeI	YGGCCR	2 cut(s)	931, 1157
Eam1104I	CTCTTC	4 cut(s)	264, 269, 825, 1098
EarI	CTCTTC	4 cut(s)	264, 269, 825, 1098
Eco130I	CCWWGG	1 cut(s)	953
Eco31I	GGTCTC	1 cut(s)	1031
Eco47I	GGWCC	2 cut(s)	507, 764
Eco57I	CTGAAG	2 cut(s)	288, 521
Eco72I	CACGTG	1 cut(s)	605
Eco81I	CCTNAGG	1 cut(s)	216
EcoRII	CCWGG	3 cut(s)	342, 376, 1029
EcoT14I	CCWWGG	1 cut(s)	953
ErhI	CCWWGG	1 cut(s)	953
FaeI	CATG	5 cut(s)	206, 578, 688, 782, 916
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	5 cut(s)	202, 574, 684, 778, 912
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	5 cut(s)	327, 498, 669, 904, 950
FokI	GGATG	3 cut(s)	160, 489, 923
Fsp4HI	GCNGC	5 cut(s)	327, 498, 669, 904, 950
FspBI	CTAG	3 cut(s)	896, 954, 971
GlaI	GCGC	2 cut(s)	290, 1056
GluI	GCNGC	5 cut(s)	327, 498, 669, 904, 950
HaeII	RGCGCY	2 cut(s)	292, 1058
HaeIII	GGCC	2 cut(s)	933, 1159
HapII	CCGG	4 cut(s)	739, 870, 930, 1156
HgaI	GACGC	1 cut(s)	638
HhaI	GCGC	2 cut(s)	291, 1057
Hin1II	CATG	5 cut(s)	206, 578, 688, 782, 916
Hin6I	GCGC	2 cut(s)	289, 1055
HinP1I	GCGC	2 cut(s)	289, 1055
HinfI	GANTC	3 cut(s)	570, 632, 689
HpaII	CCGG	4 cut(s)	739, 870, 930, 1156
HphI	GGTGA	1 cut(s)	848
Hpy188I	TCNGA	5 cut(s)	44, 268, 362, 439, 887
Hpy188III	TCNNGA	6 cut(s)	215, 449, 636, 739, 896, 1182
Hpy99I	CGWCG	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	2 cut(s)	421, 532
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	7 cut(s)	4, 329, 464, 671, 903, 1011, 1167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 1077
HpyF3I	CTNAG	5 cut(s)	64, 216, 438, 944, 1131
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	5 cut(s)	206, 578, 688, 782, 916
HspAI	GCGC	2 cut(s)	289, 1055
Kpn2I	TCCGGA	1 cut(s)	738
KroI	GCCGGC	1 cut(s)	929
KroNI	GCCGGC	1 cut(s)	931
Kzo9I	GATC	4 cut(s)	139, 166, 190, 892
LmnI	GCTCC	3 cut(s)	286, 814, 1119
Lsp1109I	GCAGC	5 cut(s)	313, 484, 655, 915, 936
LweI	GCATC	5 cut(s)	467, 600, 872, 916, 1063
MaeI	CTAG	3 cut(s)	896, 954, 971
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	141, 168, 192, 894
MboI	GATC	4 cut(s)	139, 166, 190, 892
MboII	GAAGA	9 cut(s)	49, 100, 103, 106, 281, 286, 842, 902, 1085
MfeI	CAATTG	1 cut(s)	965
MflI	RGATCY	1 cut(s)	892
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	264
MroI	TCCGGA	1 cut(s)	738
MroNI	GCCGGC	1 cut(s)	929
MseI	TTAA	8 cut(s)	26, 152, 371, 431, 729, 981, 1059, 1113
MslI	CAYNNNNRTG	1 cut(s)	579
MspCI	CTTAAG	1 cut(s)	1058
MspI	CCGG	4 cut(s)	739, 870, 930, 1156
MspR9I	CCNGG	4 cut(s)	344, 378, 871, 1031
MunI	CAATTG	1 cut(s)	965
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	3 cut(s)	344, 378, 1031
MwoI	GCNNNNNNNGC	2 cut(s)	461, 1077
NaeI	GCCGGC	1 cut(s)	931
NciI	CCSGG	1 cut(s)	871
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	4 cut(s)	139, 166, 190, 892
NgoMIV	GCCGGC	1 cut(s)	929
NheI	GCTAGC	1 cut(s)	970
NlaIII	CATG	5 cut(s)	206, 578, 688, 782, 916
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	464
PdiI	GCCGGC	1 cut(s)	931
PfeI	GAWTC	2 cut(s)	570, 689
PkrI	GCNGC	5 cut(s)	328, 499, 670, 905, 951
PleI	GAGTC	1 cut(s)	640
PmaCI	CACGTG	1 cut(s)	605
PmlI	CACGTG	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	640
Ppu21I	YACGTR	1 cut(s)	605
PsiI	TTATAA	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	342, 376, 1029
PspCI	CACGTG	1 cut(s)	605
PspGI	CCWGG	3 cut(s)	342, 376, 1029
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	2 cut(s)	507, 764
PstI	CTGCAG	2 cut(s)	331, 1013
PsuI	RGATCY	1 cut(s)	892
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	8 cut(s)	26, 152, 371, 431, 729, 981, 1059, 1113
SatI	GCNGC	5 cut(s)	327, 498, 669, 904, 950
Sau3AI	GATC	4 cut(s)	139, 166, 190, 892
Sau96I	GGNCC	2 cut(s)	507, 764
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	4 cut(s)	344, 378, 871, 1031
SfaNI	GCATC	5 cut(s)	467, 600, 872, 916, 1063
SfcI	CTRYAG	2 cut(s)	327, 1009
SinI	GGWCC	2 cut(s)	507, 764
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	1058
SmoI	CTYRAG	1 cut(s)	1058
SsiI	CCGC	1 cut(s)	1027
SspMI	CTAG	3 cut(s)	896, 954, 971
StyD4I	CCNGG	4 cut(s)	342, 376, 869, 1029
StyI	CCWWGG	1 cut(s)	953
TaaI	ACNGT	2 cut(s)	421, 532
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	570, 689
Tru1I	TTAA	8 cut(s)	26, 152, 371, 431, 729, 981, 1059, 1113
Tru9I	TTAA	8 cut(s)	26, 152, 371, 431, 729, 981, 1059, 1113
TscAI	CASTG	1 cut(s)	948
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	5 cut(s)	326, 497, 668, 903, 949
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	326, 569, 929
TspGWI	ACGGA	2 cut(s)	364, 413
TspRI	CASTG	1 cut(s)	948
Vha464I	CTTAAG	1 cut(s)	1058
VpaK11BI	GGWCC	2 cut(s)	507, 764
XapI	RAATTY	4 cut(s)	225, 839, 919, 1063
XbaI	TCTAGA	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	2 cut(s)	779, 1048
XmaJI	CCTAGG	1 cut(s)	953
XspI	CTAG	3 cut(s)	896, 954, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.