Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Forward (+)

14765714 .. 14773629

Gene Structure 7916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCAGGGGAGAACTTGGATGAAAATATTCCTTGCGAGGAAAATGGGACTGTAGAATCTTCGAATGGCAATGGTAATGGAGAAGACGCTCAACAATCTCCAACTGTTCAGAAAGATGAGGATGAAGACAAAGATGTTTCAAAAAAGAAGAAGAAGAAAAATAAGAGCAAGAAAAAGAAAGCACAGGCAGAGCATACTGATCCACAATCTTTAAGTGGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGAGGGCGAAATTCAACAATATAGAGATGACAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCCGAGAATGGTCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTAGATTTTGGAACTCATATTGATGGTCATATAGTTGACTGTGCATTTACAGCAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATTGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGTTAAAAGTATCCGGAACTTGAATGGACATGGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTGAGAGGAGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTTGCGATTGAAACTTTCGCATCAACTGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCGTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCATTGTCCAGCCTCTTCCTCCTCTCTGTGATGTTAAAGGGAGCTATGTATCTCAGTTTGAGCATACAATTTTGCTCCGGCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

425

Amino Acids

47.47

Weight (kDa)

5.27

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	128 - 319	2e-23	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1250
AccIII	TCCGGA	1 cut(s)	816
AciI	CCGC	1 cut(s)	1105
AclWI	GGATC	3 cut(s)	194, 221, 656
AcoI	YGGCCR	2 cut(s)	1009, 1235
AcsI	RAATTY	4 cut(s)	285, 917, 997, 1141
AcuI	CTGAAG	2 cut(s)	348, 551
AcvI	CACGTG	1 cut(s)	683
AfiI	CCNNNNNNNGG	3 cut(s)	265, 548, 1111
AflII	CTTAAG	1 cut(s)	1136
AjnI	CCWGG	2 cut(s)	406, 1107
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AloI	GAACNNNNNNTCC	2 cut(s)	855, 887
AluBI	AGCT	2 cut(s)	386, 1200
AluI	AGCT	2 cut(s)	386, 1200
Alw26I	GTCTC	2 cut(s)	428, 1109
AlwI	GGATC	3 cut(s)	194, 221, 656
Aor13HI	TCCGGA	1 cut(s)	816
AoxI	GGCC	2 cut(s)	1009, 1235
ApeKI	GCWGC	6 cut(s)	386, 527, 641, 746, 981, 1027
ApoI	RAATTY	4 cut(s)	285, 917, 997, 1141
Asp700I	GAANNNNTTC	1 cut(s)	27
AspA2I	CCTAGG	1 cut(s)	1031
AspLEI	GCGC	2 cut(s)	351, 1135
AspS9I	GGNCC	2 cut(s)	537, 842
AsuHPI	GGTGA	1 cut(s)	926
AsuII	TTCGAA	1 cut(s)	62
AsuNHI	GCTAGC	1 cut(s)	1048
AvaII	GGWCC	2 cut(s)	537, 842
AvrII	CCTAGG	1 cut(s)	1031
AxyI	CCTNAGG	1 cut(s)	276
BbrPI	CACGTG	1 cut(s)	683
BbsI	GAAGAC	2 cut(s)	90, 132
BbvI	GCAGC	6 cut(s)	373, 514, 653, 733, 993, 1014
BccI	CCATC	2 cut(s)	241, 605
BciT130I	CCWGG	2 cut(s)	408, 1109
BciVI	GTATCC	1 cut(s)	824
BcoDI	GTCTC	2 cut(s)	428, 1109
BfaI	CTAG	3 cut(s)	974, 1032, 1049
BfmI	CTRYAG	3 cut(s)	51, 387, 1087
BfoI	RGCGCY	2 cut(s)	352, 1136
BfrI	CTTAAG	1 cut(s)	1136
BfuAI	ACCTGC	1 cut(s)	1250
BfuI	GTATCC	1 cut(s)	824
BglII	AGATCT	1 cut(s)	970
BisI	GCNGC	6 cut(s)	387, 528, 642, 747, 982, 1028
BlnI	CCTAGG	1 cut(s)	1031
BlsI	GCNGC	6 cut(s)	388, 529, 643, 748, 983, 1029
Bme1390I	CCNGG	2 cut(s)	408, 1109
Bme18I	GGWCC	2 cut(s)	537, 842
BmgT120I	GGNCC	2 cut(s)	537, 842
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	2 cut(s)	408, 1109
BmrI	ACTGGG	1 cut(s)	957
BmsI	GCATC	4 cut(s)	497, 950, 994, 1141
BmtI	GCTAGC	1 cut(s)	1052
BmuI	ACTGGG	1 cut(s)	957
BpiI	GAAGAC	2 cut(s)	90, 132
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	683
BsaI	GGTCTC	1 cut(s)	1109
BsaJI	CCNNGG	2 cut(s)	1031, 1108
BsaWI	WCCGGW	1 cut(s)	816
BsaXI	ACNNNNNCTCC	2 cut(s)	1106, 1136
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 548, 1111
Bse118I	RCCGGY	1 cut(s)	1007
Bse1I	ACTGG	1 cut(s)	952
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	2 cut(s)	76, 489
BseAI	TCCGGA	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	408, 1109
BseDI	CCNNGG	2 cut(s)	1031, 1108
BseGI	GGATG	5 cut(s)	25, 127, 233, 512, 1014
BseLI	CCNNNNNNNGG	3 cut(s)	265, 548, 1111
BseMI	GCAATG	2 cut(s)	76, 489
BseMII	CTCAG	3 cut(s)	267, 1013, 1223
BseNI	ACTGG	1 cut(s)	952
BseRI	GAGGAG	2 cut(s)	900, 1167
BseXI	GCAGC	6 cut(s)	373, 514, 653, 733, 993, 1014
BsgI	GTGCAG	1 cut(s)	1000
BshFI	GGCC	2 cut(s)	1011, 1237
BsiSI	CCGG	3 cut(s)	817, 1008, 1234
BslFI	GGGAC	2 cut(s)	61, 566
BslI	CCNNNNNNNGG	3 cut(s)	265, 548, 1111
BsmAI	GTCTC	2 cut(s)	428, 1109
BsmFI	GGGAC	2 cut(s)	61, 566
BsmI	GAATGC	2 cut(s)	494, 644
BsnI	GGCC	2 cut(s)	1011, 1237
Bso31I	GGTCTC	1 cut(s)	1109
Bsp119I	TTCGAA	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	816
Bsp143I	GATC	5 cut(s)	199, 226, 250, 661, 970
BspACI	CCGC	1 cut(s)	1105
BspANI	GGCC	2 cut(s)	1011, 1237
BspCNI	CTCAG	3 cut(s)	268, 1014, 1222
BspEI	TCCGGA	1 cut(s)	816
BspLI	GGNNCC	1 cut(s)	539
BspMAI	CTGCAG	2 cut(s)	391, 1091
BspMI	ACCTGC	1 cut(s)	1250
BspOI	GCTAGC	1 cut(s)	1052
BspPI	GGATC	3 cut(s)	194, 221, 656
BspT104I	TTCGAA	1 cut(s)	62
BspTI	CTTAAG	1 cut(s)	1136
BspTNI	GGTCTC	1 cut(s)	1109
BsrDI	GCAATG	2 cut(s)	76, 489
BsrFI	RCCGGY	1 cut(s)	1007
BsrI	ACTGG	1 cut(s)	952
BssAI	RCCGGY	1 cut(s)	1007
BssECI	CCNNGG	2 cut(s)	1031, 1108
BssMI	GATC	5 cut(s)	199, 226, 250, 661, 970
BssT1I	CCWWGG	1 cut(s)	1031
Bst2UI	CCWGG	2 cut(s)	408, 1109
Bst4CI	ACNGT	5 cut(s)	52, 106, 451, 562, 629
Bst6I	CTCTTC	4 cut(s)	324, 329, 903, 1176
BstAFI	CTTAAG	1 cut(s)	1136
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	683
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	6 cut(s)	404, 487, 1009, 1050, 1091, 1156
BstDEI	CTNAG	3 cut(s)	276, 1022, 1209
BstF5I	GGATG	5 cut(s)	25, 127, 233, 512, 1014
BstH2I	RGCGCY	2 cut(s)	352, 1136
BstHHI	GCGC	2 cut(s)	351, 1135
BstKTI	GATC	5 cut(s)	202, 229, 253, 664, 973
BstMAI	GTCTC	2 cut(s)	428, 1109
BstMBI	GATC	5 cut(s)	199, 226, 250, 661, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 638, 1155
BstNI	CCWGG	2 cut(s)	408, 1109
BstSCI	CCNGG	2 cut(s)	406, 1107
BstSFI	CTRYAG	3 cut(s)	51, 387, 1087
BstV1I	GCAGC	6 cut(s)	373, 514, 653, 733, 993, 1014
BstV2I	GAAGAC	2 cut(s)	90, 132
BstX2I	RGATCY	1 cut(s)	970
BstYI	RGATCY	1 cut(s)	970
Bsu36I	CCTNAGG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	2 cut(s)	1011, 1237
BtgZI	GCGATG	2 cut(s)	383, 1164
BtsCI	GGATG	5 cut(s)	25, 127, 233, 512, 1014
BtsIMutI	CAGTG	1 cut(s)	1019
BveI	ACCTGC	1 cut(s)	1250
Cac8I	GCNNGC	6 cut(s)	404, 487, 1009, 1050, 1091, 1156
CfoI	GCGC	2 cut(s)	351, 1135
Cfr10I	RCCGGY	1 cut(s)	1007
Cfr13I	GGNCC	2 cut(s)	537, 842
CseI	GACGC	2 cut(s)	95, 716
CviAII	CATG	4 cut(s)	263, 833, 857, 991
CviJI	RGCY	9 cut(s)	386, 406, 677, 984, 1011, 1027, 1168, 1200, 1237
CviKI_1	RGCY	9 cut(s)	386, 406, 677, 984, 1011, 1027, 1168, 1200, 1237
DdeI	CTNAG	3 cut(s)	276, 1022, 1209
DpnI	GATC	5 cut(s)	201, 228, 252, 663, 972
DpnII	GATC	5 cut(s)	199, 226, 250, 661, 970
EaeI	YGGCCR	2 cut(s)	1009, 1235
Eam1104I	CTCTTC	4 cut(s)	324, 329, 903, 1176
EarI	CTCTTC	4 cut(s)	324, 329, 903, 1176
Eco130I	CCWWGG	1 cut(s)	1031
Eco31I	GGTCTC	1 cut(s)	1109
Eco47I	GGWCC	2 cut(s)	537, 842
Eco57I	CTGAAG	2 cut(s)	348, 551
Eco72I	CACGTG	1 cut(s)	683
Eco81I	CCTNAGG	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	406, 1107
EcoT14I	CCWWGG	1 cut(s)	1031
ErhI	CCWWGG	1 cut(s)	1031
FaeI	CATG	4 cut(s)	266, 836, 860, 994
FaqI	GGGAC	2 cut(s)	61, 566
FatI	CATG	4 cut(s)	262, 832, 856, 990
FauNDI	CATATG	1 cut(s)	772
Fnu4HI	GCNGC	6 cut(s)	387, 528, 642, 747, 982, 1028
FokI	GGATG	5 cut(s)	32, 134, 220, 519, 1001
Fsp4HI	GCNGC	6 cut(s)	387, 528, 642, 747, 982, 1028
FspBI	CTAG	3 cut(s)	974, 1032, 1049
GlaI	GCGC	2 cut(s)	350, 1134
GluI	GCNGC	6 cut(s)	387, 528, 642, 747, 982, 1028
HaeII	RGCGCY	2 cut(s)	352, 1136
HaeIII	GGCC	2 cut(s)	1011, 1237
HapII	CCGG	3 cut(s)	817, 1008, 1234
HgaI	GACGC	2 cut(s)	95, 716
HhaI	GCGC	2 cut(s)	351, 1135
Hin1II	CATG	4 cut(s)	266, 836, 860, 994
Hin6I	GCGC	2 cut(s)	349, 1133
HinP1I	GCGC	2 cut(s)	349, 1133
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	3 cut(s)	56, 710, 767
HpaII	CCGG	3 cut(s)	817, 1008, 1234
HphI	GGTGA	1 cut(s)	926
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	4 cut(s)	111, 328, 469, 965
Hpy188III	TCNNGA	6 cut(s)	275, 479, 714, 817, 974, 1260
Hpy8I	GTNNAC	1 cut(s)	625
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	787
HpyCH4III	ACNGT	5 cut(s)	52, 106, 451, 562, 629
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	7 cut(s)	389, 494, 632, 749, 981, 1089, 1245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 638, 1155
HpyF3I	CTNAG	3 cut(s)	276, 1022, 1209
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	4 cut(s)	266, 836, 860, 994
HspAI	GCGC	2 cut(s)	349, 1133
Kpn2I	TCCGGA	1 cut(s)	816
KroI	GCCGGC	1 cut(s)	1007
KroNI	GCCGGC	1 cut(s)	1009
Kzo9I	GATC	5 cut(s)	199, 226, 250, 661, 970
LmnI	GCTCC	4 cut(s)	346, 892, 1197, 1236
Lsp1109I	GCAGC	6 cut(s)	373, 514, 653, 733, 993, 1014
LweI	GCATC	4 cut(s)	497, 950, 994, 1141
MaeI	CTAG	3 cut(s)	974, 1032, 1049
MaeII	ACGT	1 cut(s)	682
MalI	GATC	5 cut(s)	201, 228, 252, 663, 972
MboI	GATC	5 cut(s)	199, 226, 250, 661, 970
MfeI	CAATTG	1 cut(s)	1043
MflI	RGATCY	1 cut(s)	970
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	2 cut(s)	125, 324
MroI	TCCGGA	1 cut(s)	816
MroNI	GCCGGC	1 cut(s)	1007
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	6 cut(s)	212, 461, 807, 1059, 1137, 1191
MslI	CAYNNNNRTG	1 cut(s)	609
MspCI	CTTAAG	1 cut(s)	1136
MspI	CCGG	3 cut(s)	817, 1008, 1234
MspR9I	CCNGG	2 cut(s)	408, 1109
MunI	CAATTG	1 cut(s)	1043
Mva1269I	GAATGC	2 cut(s)	494, 644
MvaI	CCWGG	2 cut(s)	408, 1109
MwoI	GCNNNNNNNGC	3 cut(s)	491, 638, 1155
NaeI	GCCGGC	1 cut(s)	1009
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	5 cut(s)	199, 226, 250, 661, 970
NgoMIV	GCCGGC	1 cut(s)	1007
NheI	GCTAGC	1 cut(s)	1048
NlaIII	CATG	4 cut(s)	266, 836, 860, 994
NlaIV	GGNNCC	1 cut(s)	539
NspV	TTCGAA	1 cut(s)	62
PctI	GAATGC	2 cut(s)	494, 644
PdiI	GCCGGC	1 cut(s)	1009
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	56, 767
PkrI	GCNGC	6 cut(s)	388, 529, 643, 748, 983, 1029
PleI	GAGTC	1 cut(s)	718
PmaCI	CACGTG	1 cut(s)	683
PmlI	CACGTG	1 cut(s)	683
PpsI	GAGTC	1 cut(s)	718
Ppu21I	YACGTR	1 cut(s)	683
Psp6I	CCWGG	2 cut(s)	406, 1107
PspCI	CACGTG	1 cut(s)	683
PspGI	CCWGG	2 cut(s)	406, 1107
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	2 cut(s)	537, 842
PstI	CTGCAG	2 cut(s)	391, 1091
PsuI	RGATCY	1 cut(s)	970
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	6 cut(s)	212, 461, 807, 1059, 1137, 1191
SatI	GCNGC	6 cut(s)	387, 528, 642, 747, 982, 1028
Sau3AI	GATC	5 cut(s)	199, 226, 250, 661, 970
Sau96I	GGNCC	2 cut(s)	537, 842
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	2 cut(s)	408, 1109
SetI	ASST	8 cut(s)	388, 685, 780, 798, 847, 1202, 1244, 1254
SfaNI	GCATC	4 cut(s)	497, 950, 994, 1141
SfcI	CTRYAG	3 cut(s)	51, 387, 1087
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	2 cut(s)	537, 842
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	1136
SmoI	CTYRAG	1 cut(s)	1136
SsiI	CCGC	1 cut(s)	1105
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	3 cut(s)	974, 1032, 1049
StyD4I	CCNGG	2 cut(s)	406, 1107
StyI	CCWWGG	1 cut(s)	1031
TaaI	ACNGT	5 cut(s)	52, 106, 451, 562, 629
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	2 cut(s)	62, 382
TfiI	GAWTC	2 cut(s)	56, 767
Tru1I	TTAA	6 cut(s)	212, 461, 807, 1059, 1137, 1191
Tru9I	TTAA	6 cut(s)	212, 461, 807, 1059, 1137, 1191
TscAI	CASTG	1 cut(s)	1026
TseI	GCWGC	6 cut(s)	386, 527, 641, 746, 981, 1027
TspDTI	ATGAA	5 cut(s)	36, 138, 386, 599, 1007
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	1026
Vha464I	CTTAAG	1 cut(s)	1136
VpaK11BI	GGWCC	2 cut(s)	537, 842
XapI	RAATTY	4 cut(s)	285, 917, 997, 1141
XbaI	TCTAGA	1 cut(s)	973
XcmI	CCANNNNNNNNNTGG	2 cut(s)	857, 1126
XmaJI	CCTAGG	1 cut(s)	1031
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	3 cut(s)	974, 1032, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.