FvH4_5g31110

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
22039310 .. 22046389
7080 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31110.t2

Sequence Viewer

Length: 1356 bp
ATGGCAGGGGAGGACTTGGATGAGAATATTCCTTGCGAGGAAAATGATATCGTAGAATCTTCGAATGGTTGTGGAGAAGCCACTGAACAATCTCCAACCGTTGAGAAAGATGAGGATGAAGACAAAGATGTTTCAAAGAAAAAGAAGAAGAAAAATAAGAGCAAGAAAAAGAAAGCACAGACAGAGCTAACTGACCCACAGACTACAAGTGGGAAAACTGATCCACAATCTACAAGTGGGTTGACTAATCCACAATCGAAAAGTAGGCAAACTGATCCACCATCCATTCCACTTATTGATCTATTCCCTCATGGGGAGTATCCTGAGGGTGAAATTCAACAATACAGAGACGACAACTTGTGGAGAACTACCTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCTGAAGTTCATCTCCAGGTACGGAAATACATTAGATCGATCTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAGATTAATATCCGAGAATGGTCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAGCTAGATTTTGGAACTCATGTTGATGGTCATATAGTTGACTGTGCCTTTACAGTAGCATTCAATCCTATGTTTAATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACTGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATTCAAGAAGTCATGGAATCATATGAGGTTGAAATCAATGGGAAGGTGTTTCAAGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTAAAAGGAGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTTGCAATCGAAACTTTCGCATCAACTGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCGGGTCACATCCCACTGAGGCTGCCTAGGGCAAAGCAACTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCCTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACAAAGTATCTTATGGCGCTTAAGAATTTATGTGATGCTGGCATTGTGCAGCCCTGTCCTCCTCTCTGTGATGTTAAGGGAAGCTATGTATCTCAGTTTGAACATACAATTTTACTTCGGCCAACCTGTAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Protein Analysis

452

Amino Acids

50.53

Weight (kDa)

5.42

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 142 - 345 3.2e-27 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 894
AciI CCGC 2 cut(s) 1085, 1183
AclWI GGATC 2 cut(s) 215, 269
AcoI YGGCCR 1 cut(s) 1313
AcsI RAATTY 4 cut(s) 333, 995, 1075, 1219
AcuI CTGAAG 3 cut(s) 396, 459, 629
AcvI CACGTG 1 cut(s) 761
AfaI GTAC 1 cut(s) 456
AfiI CCNNNNNNNGG 4 cut(s) 313, 626, 1167, 1189
AflII CTTAAG 1 cut(s) 1214
AjnI CCWGG 3 cut(s) 450, 484, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AloI GAACNNNNNNTCC 2 cut(s) 933, 965
AluBI AGCT 4 cut(s) 187, 434, 667, 1278
AluI AGCT 4 cut(s) 187, 434, 667, 1278
Alw26I GTCTC 3 cut(s) 342, 506, 1187
AlwI GGATC 2 cut(s) 215, 269
Aor13HI TCCGGA 1 cut(s) 894
AoxI GGCC 2 cut(s) 1158, 1313
ApeKI GCWGC 6 cut(s) 434, 605, 824, 1059, 1105, 1243
ApoI RAATTY 4 cut(s) 333, 995, 1075, 1219
AseI ATTAAT 1 cut(s) 539
AspA2I CCTAGG 1 cut(s) 1109
AspLEI GCGC 2 cut(s) 399, 1213
AspS9I GGNCC 2 cut(s) 615, 920
AsuHPI GGTGA 2 cut(s) 341, 1004
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 1126
AvaII GGWCC 2 cut(s) 615, 920
AvrII CCTAGG 1 cut(s) 1109
AxyI CCTNAGG 1 cut(s) 324
BbrPI CACGTG 1 cut(s) 761
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 6 cut(s) 421, 592, 811, 1071, 1092, 1255
BccI CCATC 2 cut(s) 289, 683
BciT130I CCWGG 3 cut(s) 452, 486, 1187
BciVI GTATCC 2 cut(s) 330, 902
BcoDI GTCTC 3 cut(s) 342, 506, 1187
BfaI CTAG 4 cut(s) 668, 1052, 1110, 1127
BfmI CTRYAG 1 cut(s) 1165
BfoI RGCGCY 2 cut(s) 400, 1214
BfrI CTTAAG 1 cut(s) 1214
BfuI GTATCC 2 cut(s) 330, 902
BglII AGATCT 1 cut(s) 1048
BisI GCNGC 6 cut(s) 435, 606, 825, 1060, 1106, 1244
BlnI CCTAGG 1 cut(s) 1109
BlsI GCNGC 6 cut(s) 436, 607, 826, 1061, 1107, 1245
Bme1390I CCNGG 3 cut(s) 452, 486, 1187
Bme18I GGWCC 2 cut(s) 615, 920
BmgT120I GGNCC 2 cut(s) 615, 920
BmiI GGNNCC 1 cut(s) 617
BmrFI CCNGG 3 cut(s) 452, 486, 1187
BmrI ACTGGG 1 cut(s) 1035
BmsI GCATC 4 cut(s) 575, 1028, 1072, 1219
BmtI GCTAGC 1 cut(s) 1130
BmuI ACTGGG 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 761
BsaBI GATNNNNATC 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 1109, 1186
BsaWI WCCGGW 1 cut(s) 894
BsaXI ACNNNNNCTCC 2 cut(s) 1184, 1214
Bsc4I CCNNNNNNNGG 4 cut(s) 313, 626, 1167, 1189
Bse1I ACTGG 2 cut(s) 781, 1030
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 541
BseAI TCCGGA 1 cut(s) 894
BseBI CCWGG 3 cut(s) 452, 486, 1187
BseCI ATCGAT 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 1109, 1186
BseGI GGATG 5 cut(s) 25, 121, 281, 590, 1092
BseJI GATNNNNATC 1 cut(s) 541
BseLI CCNNNNNNNGG 4 cut(s) 313, 626, 1167, 1189
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 315, 1091, 1301
BseNI ACTGG 2 cut(s) 781, 1030
BseRI GAGGAG 1 cut(s) 1245
BseXI GCAGC 6 cut(s) 421, 592, 811, 1071, 1092, 1255
BsgI GTGCAG 2 cut(s) 1078, 1262
BshFI GGCC 2 cut(s) 1160, 1315
BshVI ATCGAT 1 cut(s) 473
BsiSI CCGG 1 cut(s) 895
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 4 cut(s) 313, 626, 1167, 1189
BsmAI GTCTC 3 cut(s) 342, 506, 1187
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 644
BsmI GAATGC 2 cut(s) 572, 722
BsnI GGCC 2 cut(s) 1160, 1315
Bsp119I TTCGAA 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 894
Bsp143I GATC 6 cut(s) 220, 274, 298, 470, 474, 1048
BspACI CCGC 2 cut(s) 1085, 1183
BspANI GGCC 2 cut(s) 1160, 1315
BspCNI CTCAG 3 cut(s) 316, 1092, 1300
BspDI ATCGAT 1 cut(s) 473
BspEI TCCGGA 1 cut(s) 894
BspLI GGNNCC 1 cut(s) 617
BspMAI CTGCAG 1 cut(s) 1169
BspOI GCTAGC 1 cut(s) 1130
BspPI GGATC 2 cut(s) 215, 269
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 1214
BsrDI GCAATG 1 cut(s) 567
BsrI ACTGG 2 cut(s) 781, 1030
BssECI CCNNGG 2 cut(s) 1109, 1186
BssMI GATC 6 cut(s) 220, 274, 298, 470, 474, 1048
BssT1I CCWWGG 1 cut(s) 1109
Bst2UI CCWGG 3 cut(s) 452, 486, 1187
Bst4CI ACNGT 5 cut(s) 100, 529, 640, 707, 718
Bst6I CTCTTC 3 cut(s) 372, 377, 981
BstAFI CTTAAG 1 cut(s) 1214
BstAPI GCANNNNNTGC 1 cut(s) 569
BstBAI YACGTR 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 4 cut(s) 565, 1128, 1169, 1234
BstDEI CTNAG 3 cut(s) 324, 1100, 1287
BstENI CCTNNNNNAGG 1 cut(s) 1165
BstF5I GGATG 5 cut(s) 25, 121, 281, 590, 1092
BstH2I RGCGCY 2 cut(s) 400, 1214
BstHHI GCGC 2 cut(s) 399, 1213
BstKTI GATC 6 cut(s) 223, 277, 301, 473, 477, 1051
BstMAI GTCTC 3 cut(s) 342, 506, 1187
BstMBI GATC 6 cut(s) 220, 274, 298, 470, 474, 1048
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNI CCWGG 3 cut(s) 452, 486, 1187
BstSCI CCNGG 3 cut(s) 450, 484, 1185
BstSFI CTRYAG 1 cut(s) 1165
BstV1I GCAGC 6 cut(s) 421, 592, 811, 1071, 1092, 1255
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 1048
BstYI RGATCY 1 cut(s) 1048
Bsu15I ATCGAT 1 cut(s) 473
Bsu36I CCTNAGG 1 cut(s) 324
BsuI GTATCC 2 cut(s) 330, 902
BsuRI GGCC 2 cut(s) 1160, 1315
BsuTUI ATCGAT 1 cut(s) 473
BtsCI GGATG 5 cut(s) 25, 121, 281, 590, 1092
BtsIMutI CAGTG 2 cut(s) 81, 1097
Cac8I GCNNGC 4 cut(s) 565, 1128, 1169, 1234
CfoI GCGC 2 cut(s) 399, 1213
Cfr13I GGNCC 2 cut(s) 615, 920
ClaI ATCGAT 1 cut(s) 473
CseI GACGC 1 cut(s) 794
Csp6I GTAC 1 cut(s) 455
CviAII CATG 5 cut(s) 311, 683, 841, 935, 1069
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 3 cut(s) 324, 1100, 1287
DpnI GATC 6 cut(s) 222, 276, 300, 472, 476, 1050
DpnII GATC 6 cut(s) 220, 274, 298, 470, 474, 1048
EaeI YGGCCR 1 cut(s) 1313
Eam1104I CTCTTC 3 cut(s) 372, 377, 981
EarI CTCTTC 3 cut(s) 372, 377, 981
Eco130I CCWWGG 1 cut(s) 1109
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 615, 920
Eco57I CTGAAG 3 cut(s) 396, 459, 629
Eco72I CACGTG 1 cut(s) 761
Eco81I CCTNAGG 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 1165
EcoRII CCWGG 3 cut(s) 450, 484, 1185
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 1109
ErhI CCWWGG 1 cut(s) 1109
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 5 cut(s) 314, 686, 844, 938, 1072
FaqI GGGAC 1 cut(s) 644
FatI CATG 5 cut(s) 310, 682, 840, 934, 1068
FauI CCCGC 1 cut(s) 1078
FauNDI CATATG 1 cut(s) 850
Fnu4HI GCNGC 6 cut(s) 435, 606, 825, 1060, 1106, 1244
FokI GGATG 5 cut(s) 32, 128, 268, 597, 1079
Fsp4HI GCNGC 6 cut(s) 435, 606, 825, 1060, 1106, 1244
FspBI CTAG 4 cut(s) 668, 1052, 1110, 1127
GlaI GCGC 2 cut(s) 398, 1212
GluI GCNGC 6 cut(s) 435, 606, 825, 1060, 1106, 1244
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 2 cut(s) 400, 1214
HaeIII GGCC 2 cut(s) 1160, 1315
HapII CCGG 1 cut(s) 895
HgaI GACGC 1 cut(s) 794
HhaI GCGC 2 cut(s) 399, 1213
Hin1II CATG 5 cut(s) 314, 686, 844, 938, 1072
Hin6I GCGC 2 cut(s) 397, 1211
HinP1I GCGC 2 cut(s) 397, 1211
HincII GTYRAC 2 cut(s) 243, 703
HindII GTYRAC 2 cut(s) 243, 703
HinfI GANTC 3 cut(s) 56, 788, 845
HpaII CCGG 1 cut(s) 895
HphI GGTGA 2 cut(s) 341, 1004
Hpy166II GTNNAC 2 cut(s) 243, 703
Hpy188I TCNGA 3 cut(s) 376, 547, 1043
Hpy188III TCNNGA 7 cut(s) 323, 557, 792, 833, 895, 1052, 1338
Hpy8I GTNNAC 2 cut(s) 243, 703
Hpy99I CGWCG 1 cut(s) 432
HpyAV CCTTC 2 cut(s) 865, 1171
HpyCH4III ACNGT 5 cut(s) 100, 529, 640, 707, 718
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 6 cut(s) 572, 827, 1004, 1059, 1167, 1243
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 3 cut(s) 324, 1100, 1287
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 5 cut(s) 314, 686, 844, 938, 1072
HspAI GCGC 2 cut(s) 397, 1211
Kpn2I TCCGGA 1 cut(s) 894
Kzo9I GATC 6 cut(s) 220, 274, 298, 470, 474, 1048
LmnI GCTCC 2 cut(s) 394, 970
Lsp1109I GCAGC 6 cut(s) 421, 592, 811, 1071, 1092, 1255
LweI GCATC 4 cut(s) 575, 1028, 1072, 1219
MaeI CTAG 4 cut(s) 668, 1052, 1110, 1127
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 1 cut(s) 1088
MalI GATC 6 cut(s) 222, 276, 300, 472, 476, 1050
MboI GATC 6 cut(s) 220, 274, 298, 470, 474, 1048
MboII GAAGA 8 cut(s) 51, 131, 157, 160, 389, 394, 998, 1058
MflI RGATCY 1 cut(s) 1048
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 119, 372
MroI TCCGGA 1 cut(s) 894
MseI TTAA 7 cut(s) 479, 539, 738, 885, 1137, 1215, 1269
MslI CAYNNNNRTG 1 cut(s) 687
MspCI CTTAAG 1 cut(s) 1214
MspI CCGG 1 cut(s) 895
MspR9I CCNGG 3 cut(s) 452, 486, 1187
Mva1269I GAATGC 2 cut(s) 572, 722
MvaI CCWGG 3 cut(s) 452, 486, 1187
MwoI GCNNNNNNNGC 1 cut(s) 569
NdeI CATATG 1 cut(s) 850
NdeII GATC 6 cut(s) 220, 274, 298, 470, 474, 1048
NheI GCTAGC 1 cut(s) 1126
NlaIII CATG 5 cut(s) 314, 686, 844, 938, 1072
NlaIV GGNNCC 1 cut(s) 617
NmuCI GTSAC 1 cut(s) 1088
NspV TTCGAA 1 cut(s) 62
PctI GAATGC 2 cut(s) 572, 722
PfeI GAWTC 2 cut(s) 56, 845
PkrI GCNGC 6 cut(s) 436, 607, 826, 1061, 1107, 1245
PleI GAGTC 1 cut(s) 796
PmaCI CACGTG 1 cut(s) 761
PmlI CACGTG 1 cut(s) 761
PpsI GAGTC 1 cut(s) 796
Ppu21I YACGTR 1 cut(s) 761
PshBI ATTAAT 1 cut(s) 539
Psp6I CCWGG 3 cut(s) 450, 484, 1185
PspCI CACGTG 1 cut(s) 761
PspGI CCWGG 3 cut(s) 450, 484, 1185
PspN4I GGNNCC 1 cut(s) 617
PspPI GGNCC 2 cut(s) 615, 920
PstI CTGCAG 1 cut(s) 1169
PsuI RGATCY 1 cut(s) 1048
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 7 cut(s) 479, 539, 738, 885, 1137, 1215, 1269
SatI GCNGC 6 cut(s) 435, 606, 825, 1060, 1106, 1244
Sau3AI GATC 6 cut(s) 220, 274, 298, 470, 474, 1048
Sau96I GGNCC 2 cut(s) 615, 920
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 3 cut(s) 452, 486, 1187
SfaNI GCATC 4 cut(s) 575, 1028, 1072, 1219
SfcI CTRYAG 1 cut(s) 1165
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 2 cut(s) 615, 920
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 1214
SmoI CTYRAG 1 cut(s) 1214
SsiI CCGC 2 cut(s) 1085, 1183
SspI AATATT 1 cut(s) 28
SspMI CTAG 4 cut(s) 668, 1052, 1110, 1127
StyD4I CCNGG 3 cut(s) 450, 484, 1185
StyI CCWWGG 1 cut(s) 1109
TaaI ACNGT 5 cut(s) 100, 529, 640, 707, 718
TaiI ACGT 1 cut(s) 763
TaqI TCGA 5 cut(s) 62, 257, 430, 473, 1008
TfiI GAWTC 2 cut(s) 56, 845
Tru1I TTAA 7 cut(s) 479, 539, 738, 885, 1137, 1215, 1269
Tru9I TTAA 7 cut(s) 479, 539, 738, 885, 1137, 1215, 1269
TscAI CASTG 2 cut(s) 88, 1104
TseFI GTSAC 1 cut(s) 1088
TseI GCWGC 6 cut(s) 434, 605, 824, 1059, 1105, 1243
Tsp45I GTSAC 1 cut(s) 1088
TspDTI ATGAA 4 cut(s) 132, 434, 677, 1085
TspGWI ACGGA 2 cut(s) 472, 521
TspRI CASTG 2 cut(s) 88, 1104
Vha464I CTTAAG 1 cut(s) 1214
VpaK11BI GGWCC 2 cut(s) 615, 920
VspI ATTAAT 1 cut(s) 539
XagI CCTNNNNNAGG 1 cut(s) 1165
XapI RAATTY 4 cut(s) 333, 995, 1075, 1219
XbaI TCTAGA 1 cut(s) 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 935
XmaJI CCTAGG 1 cut(s) 1109
XspI CTAG 4 cut(s) 668, 1052, 1110, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.